genome.fa.s221.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold221
Parameters: 2 7 7 80 10 50 1000
Length:  2539808

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   

This is table  7  of  19  ( 2279 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
847042--847084	17	2.6	17	85	7	54	25	6	0	67	1.15
851867--851908	22	1.9	22	85	9	59	59	0	0	40	0.97
851893--851951	28	2.0	30	83	6	77	37	1	1	59	1.18
851938--852118	88	2.1	88	100	0	362	39	8	11	40	1.72
854451--854484	2	17.0	2	100	0	68	50	0	50	0	1.00
854581--854640	25	2.3	25	82	5	75	50	3	3	43	1.35
855865--855908	21	2.0	23	82	8	56	38	0	0	61	0.96
856528--856560	15	2.2	15	94	0	57	51	0	6	42	1.26
857123--857187	2	33.5	2	90	6	80	49	3	3	44	1.33
857302--857347	19	2.3	21	78	17	53	39	0	0	60	0.97
859837--859938	33	3.0	33	72	16	93	53	0	0	46	1.00
860168--860232	20	3.6	19	69	26	61	52	3	3	41	1.32
861381--861427	18	2.5	20	76	16	55	44	2	0	53	1.12
861441--861488	14	3.3	15	82	8	55	31	6	4	58	1.42
862381--862429	20	2.5	20	86	6	64	48	0	0	51	1.00
862381--862437	20	3.0	19	80	16	57	52	0	0	47	1.00
862803--862860	28	2.1	28	83	0	71	44	1	3	50	1.29
864320--864357	20	1.9	20	88	0	58	47	5	0	47	1.24
868266--868303	3	12.7	3	100	0	76	31	0	34	34	1.58
870318--870354	18	2.0	19	89	5	58	27	0	2	70	1.01
870777--870827	23	2.3	22	80	12	61	45	0	1	52	1.12
870778--870839	25	2.6	25	89	5	92	46	0	1	51	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
870819--870891	37	2.0	37	89	5	112	57	0	0	42	0.98
870836--870890	15	3.8	14	77	15	58	58	0	0	41	0.98
870840--870889	16	3.2	16	82	2	66	60	0	0	40	0.97
870923--870979	21	2.5	23	80	8	64	61	5	3	29	1.35
871201--871251	15	3.5	15	75	5	59	64	5	1	27	1.27
873534--873568	2	18.0	2	94	5	63	48	0	0	51	1.00
876805--877154	117	3.0	117	84	5	431	43	10	9	35	1.73
882182--882284	47	2.2	46	81	5	109	39	9	9	40	1.71
882707--882818	45	2.5	42	75	19	104	59	2	5	32	1.34
883808--883841	11	3.1	11	100	0	68	20	17	0	61	1.34
883598--884047	228	2.0	230	99	0	886	47	12	9	31	1.73
885954--886000	16	3.0	15	74	20	51	55	2	4	38	1.31
886070--886118	22	2.3	23	79	13	59	51	6	2	40	1.38
886106--886208	16	6.4	16	73	7	66	56	8	0	33	1.37
886178--886315	69	2.0	69	84	2	179	53	6	2	37	1.39
886595--886628	3	11.3	3	100	0	68	0	35	0	64	0.94
889734--889770	2	19.0	2	94	5	67	48	0	0	51	1.00
892609--892642	2	17.0	2	100	0	68	0	0	50	50	1.00
895742--895814	38	1.9	38	83	5	94	39	0	4	56	1.19
896626--896701	35	2.1	35	83	7	91	42	1	2	53	1.23
896948--897003	19	3.1	18	79	10	51	71	3	10	14	1.26
899027--899056	10	3.0	10	90	0	51	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
901528--901566	12	3.2	12	92	0	60	51	2	0	46	1.14
901597--901651	21	2.6	23	80	16	73	41	0	0	58	0.98
901598--901640	19	2.1	21	87	8	63	44	0	0	55	0.99
901539--901645	36	2.9	35	76	12	92	48	0	0	49	1.13
901597--901662	22	3.1	21	73	14	55	45	0	0	54	0.99
901818--901865	17	2.6	18	87	12	71	45	0	2	52	1.12
901966--902010	24	2.0	22	91	8	72	46	0	0	53	1.00
901920--902011	19	4.9	19	72	17	68	45	1	0	53	1.07
909066--909116	16	3.1	16	83	13	52	58	0	0	41	0.98
911151--911463	166	1.8	165	80	11	373	31	8	15	44	1.76
911198--911504	166	1.8	166	79	8	356	32	8	15	43	1.77
914724--914767	22	2.0	22	86	0	61	50	0	2	47	1.13
915122--915178	20	2.8	23	75	24	65	68	0	0	31	0.90
915485--915538	22	2.7	19	78	21	58	51	1	3	42	1.30
915516--915592	30	2.8	28	78	18	88	58	2	3	35	1.30
915913--915990	30	2.6	29	80	9	86	58	2	0	38	1.12
915952--916019	23	3.0	22	72	18	57	52	5	0	41	1.25
916014--916084	6	12.3	6	70	19	53	36	2	0	60	1.11
916001--916094	30	3.0	30	76	19	95	38	3	0	58	1.14
916012--916081	13	5.4	13	71	19	65	37	2	0	60	1.12
920222--920248	2	13.5	2	100	0	54	48	0	0	51	1.00
925829--925886	7	8.7	7	74	16	52	51	1	1	44	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
925835--925971	32	4.6	29	75	19	106	53	1	0	44	1.14
925890--925944	17	3.4	17	70	25	55	56	1	0	41	1.10
925910--925962	18	2.8	18	78	18	54	56	0	0	43	0.99
925938--925990	24	2.2	24	83	6	63	60	0	3	35	1.15
926447--926498	16	3.1	16	77	17	61	32	0	1	65	1.04
926445--926502	18	3.3	18	77	20	68	32	0	1	65	1.03
926573--926612	20	2.0	20	95	0	71	57	5	0	37	1.21
926568--926612	20	2.4	19	82	13	58	57	6	0	35	1.25
926575--926617	20	2.2	20	87	4	61	53	9	0	37	1.33
926716--926767	19	2.7	19	82	8	61	36	0	5	57	1.23
926706--926761	19	2.8	20	78	13	62	41	0	5	53	1.24
926716--926756	18	2.2	18	86	8	55	39	0	7	53	1.29
927695--927784	23	3.8	24	75	19	80	43	0	0	56	0.99
927710--927821	23	4.8	22	73	16	84	42	0	0	56	1.05
927701--927780	13	6.0	14	72	22	57	45	0	0	55	0.99
927707--927821	44	2.5	44	80	11	115	42	0	0	56	1.05
927718--927817	44	2.3	45	82	8	125	43	1	0	56	1.06
927694--927829	17	8.6	17	67	18	71	42	0	0	56	1.04
927797--927836	17	2.4	17	86	0	62	50	0	0	50	1.00
928038--928101	29	2.4	25	80	16	76	53	1	0	45	1.10
929361--929406	18	2.6	18	86	3	58	54	0	2	43	1.12
929600--929645	22	2.0	23	87	4	67	41	2	0	56	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
932892--932933	22	1.9	22	100	0	84	21	33	9	35	1.86
934496--934524	2	14.5	2	100	0	58	48	0	0	51	1.00
938844--938883	20	1.9	22	90	10	66	57	2	0	40	1.12
939100--939138	10	3.8	10	86	3	51	41	0	2	56	1.13
939552--939622	18	4.3	17	68	18	51	42	0	2	54	1.14
939554--939625	32	2.2	32	85	4	92	41	0	2	55	1.14
939680--939724	11	3.9	11	86	11	63	40	0	0	60	0.97
939652--939717	12	5.5	12	77	13	73	33	0	0	66	0.92
939657--939724	24	2.8	24	84	0	82	35	0	0	64	0.94
941795--941826	4	8.0	4	100	0	64	25	25	0	50	1.50
942489--942525	2	18.5	2	94	0	65	0	2	48	48	1.15
944448--944501	21	2.4	21	81	9	54	50	5	7	37	1.54
944949--944983	17	2.1	16	89	5	52	34	5	0	60	1.21
945481--945544	21	3.0	22	77	6	69	48	0	0	51	1.00
945531--945573	22	2.0	22	90	9	70	60	0	0	39	0.97
947420--947460	22	1.9	21	85	5	55	58	0	2	39	1.11
948574--948640	34	1.9	34	82	14	84	47	0	0	52	1.00
948574--948648	34	2.1	34	81	13	82	48	0	0	52	1.00
949360--949388	6	4.8	6	100	0	58	65	0	0	34	0.93
949508--949550	22	2.0	22	86	9	61	37	0	0	62	0.95
949533--949573	21	1.9	21	85	5	55	48	0	0	51	1.00
951962--952003	8	5.1	8	78	16	50	16	19	0	64	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
951962--952003	17	2.5	17	82	17	61	16	19	0	64	1.30
954209--954277	25	2.7	25	81	14	79	53	1	0	44	1.09
954767--954797	7	4.4	7	100	0	62	87	0	12	0	0.55
955259--955303	21	2.2	21	92	4	74	57	0	0	42	0.98
955259--955314	20	2.8	21	84	13	64	62	0	0	37	0.95
955611--955655	19	2.4	19	84	0	63	60	0	0	40	0.97
955612--955651	18	2.2	19	86	4	55	57	0	0	42	0.98
961043--961081	20	1.9	21	89	5	62	28	5	0	66	1.12
962108--962171	32	2.0	32	100	0	128	50	12	12	25	1.75
964872--964961	28	3.4	28	72	15	75	44	1	0	54	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19