genome.fa.s221.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold221
Parameters: 2 7 7 80 10 50 1000
Length:  2539808

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   

This is table  2  of  19  ( 2279 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
160323--160371	17	3.2	15	78	16	55	48	0	0	51	1.00
160326--160360	17	2.1	17	94	0	61	57	0	0	42	0.99
160348--160376	14	2.0	15	93	6	51	37	0	0	62	0.96
164388--164414	4	6.8	4	100	0	54	77	0	0	22	0.76
169757--169787	12	2.5	13	89	10	55	0	16	0	83	0.64
170451--170491	19	2.2	19	86	0	55	39	0	0	60	0.96
170459--170502	21	2.1	21	87	8	63	38	0	0	61	0.96
170481--170562	32	2.7	30	80	10	87	51	0	0	48	1.00
170900--170961	29	2.0	29	84	9	79	53	0	0	46	1.00
172121--172146	11	2.4	11	100	0	52	84	0	0	15	0.62
173106--173135	2	15.0	2	100	0	60	0	50	0	50	1.00
174907--175122	34	6.4	34	86	1	274	26	6	25	42	1.79
174907--175123	102	2.1	101	89	3	337	26	6	25	41	1.79
179532--179752	34	6.5	33	83	5	271	25	8	25	40	1.83
179532--179750	102	2.2	101	88	1	330	25	8	25	40	1.83
183993--184073	27	3.0	27	83	0	108	49	19	6	24	1.71
189697--189724	2	14.0	2	100	0	56	50	0	50	0	1.00
189866--189896	15	2.1	14	94	5	53	35	0	0	64	0.94
189887--190111	104	2.2	104	99	0	443	48	6	2	42	1.42
189989--190035	21	2.2	21	80	0	58	51	0	0	48	1.00
191778--191838	27	2.2	28	82	11	72	60	1	3	34	1.23
191874--191938	25	2.6	25	83	11	71	47	3	0	49	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
192090--192126	19	1.9	19	88	0	56	59	2	2	35	1.26
193130--193206	38	2.0	38	82	5	93	54	1	0	44	1.08
193151--193205	18	2.9	18	76	15	58	49	0	0	50	1.00
194933--194966	4	8.8	4	93	6	61	0	23	0	76	0.79
195580--195625	22	2.1	22	88	8	67	67	2	0	30	1.03
197920--197962	3	14.3	3	90	0	68	30	4	0	65	1.13
201080--201155	38	2.0	38	87	5	109	36	5	7	50	1.54
201501--201554	24	2.2	25	83	3	65	53	0	0	46	1.00
201932--201982	20	2.5	20	84	15	70	45	0	1	52	1.12
201917--202012	46	2.1	46	80	7	106	46	0	4	48	1.21
202231--202274	19	2.4	18	82	14	54	38	0	0	61	0.96
204927--205013	31	2.8	30	81	5	102	41	8	1	49	1.40
204927--205030	31	3.4	30	79	11	95	41	9	0	48	1.42
208507--208571	24	2.6	25	78	11	71	55	1	0	43	1.09
211758--211815	30	2.0	29	87	9	84	34	1	0	63	1.04
211923--211957	17	2.1	16	89	5	52	40	2	0	57	1.14
211915--211999	28	3.1	26	72	22	66	42	1	0	56	1.07
211960--212008	23	2.1	22	78	10	53	40	0	0	59	0.98
212463--212496	17	2.0	17	94	0	59	55	0	0	44	0.99
222818--222873	18	3.2	17	78	16	53	44	3	1	50	1.29
231569--231633	29	2.2	30	83	8	80	44	0	1	53	1.09
231899--231940	7	5.9	7	86	13	59	83	0	16	0	0.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
231901--231941	16	2.6	16	92	0	64	80	0	19	0	0.71
233348--233372	2	12.5	2	100	0	50	52	0	0	48	1.00
233670--233793	55	2.3	55	87	4	171	32	6	16	45	1.72
235703--235787	10	8.3	10	69	23	52	35	2	2	60	1.23
235972--236010	21	1.9	21	89	5	62	64	0	0	35	0.94
236000--236253	8	29.5	8	64	23	56	53	1	0	43	1.17
236009--236065	30	2.0	28	89	6	87	49	1	0	49	1.11
236035--236091	20	2.6	23	81	13	66	49	0	0	50	1.00
236164--236214	14	3.3	15	78	15	52	50	5	0	43	1.26
236601--236689	28	3.2	28	72	10	76	49	0	1	49	1.08
236755--236792	19	2.0	19	94	0	67	60	0	0	39	0.97
238223--238257	17	2.0	18	94	5	63	34	17	0	48	1.47
238461--238508	22	2.2	23	81	11	64	47	0	0	52	1.00
238468--238510	22	2.0	22	90	0	68	48	0	0	51	1.00
238449--238539	29	3.2	29	76	14	82	49	0	0	50	1.00
238668--238721	17	3.0	18	82	17	60	57	0	0	42	0.98
238930--238991	25	2.5	26	82	10	76	66	0	0	33	0.92
238933--238999	15	4.4	15	78	9	55	64	0	0	35	0.94
238974--239057	32	2.9	28	71	22	73	53	0	0	46	1.00
239740--239824	23	4.0	22	72	15	63	45	2	0	51	1.13
239740--239820	30	2.5	33	78	9	105	45	2	0	51	1.14
239805--239843	21	1.9	19	90	10	60	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
240052--240095	21	2.0	22	91	4	72	38	0	0	61	0.96
246354--246419	26	2.5	27	70	9	64	50	0	0	50	1.00
247018--247117	50	2.0	50	82	7	123	45	9	3	43	1.51
247522--247567	22	2.1	22	95	0	83	36	13	15	34	1.86
251769--251834	21	3.1	22	75	14	68	53	0	0	46	1.00
252543--252574	2	16.0	2	100	0	64	50	0	0	50	1.00
254803--254847	5	9.0	5	95	0	54	20	0	71	8	1.12
254804--254848	15	3.0	15	83	0	63	20	0	68	11	1.19
267273--267310	20	1.9	19	89	5	58	44	0	0	55	0.99
267273--267326	22	2.5	23	83	16	64	44	0	0	55	0.99
271528--271642	16	7.6	16	69	19	52	61	2	0	34	1.16
271531--271621	11	8.4	11	69	26	61	62	3	0	34	1.11
271531--271583	23	2.3	24	87	6	74	62	1	0	35	1.06
271538--271621	23	3.6	22	76	19	73	63	3	0	33	1.12
271535--271614	19	4.6	19	71	22	52	63	3	0	32	1.12
271606--271651	16	2.8	17	77	12	51	60	2	2	34	1.21
271955--271991	19	1.9	19	88	0	56	67	0	0	32	0.91
274343--274374	15	2.0	17	88	11	50	34	31	6	28	1.82
279082--279190	30	3.7	29	71	18	80	52	2	0	44	1.15
279592--279640	19	2.4	20	80	19	57	83	6	8	2	0.87
282243--282306	30	2.1	30	100	0	128	42	9	17	31	1.81
290172--290205	14	2.4	14	90	9	52	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
290816--290999	94	2.0	94	93	0	314	29	21	7	42	1.79
292311--292369	29	2.0	29	93	0	100	38	5	15	40	1.69
294740--294957	111	1.9	117	85	8	306	41	13	21	22	1.88
300662--300722	22	2.7	23	84	5	70	11	1	27	59	1.42
302453--302485	2	16.5	2	100	0	66	51	0	0	48	1.00
304920--305118	98	2.0	98	97	1	373	47	5	4	43	1.45
304920--305183	98	2.7	95	85	9	241	47	6	3	42	1.47
307391--307458	34	2.0	34	97	0	127	44	7	20	27	1.78
307669--307710	20	2.1	20	100	0	84	30	4	9	54	1.53
312767--312825	18	3.3	18	79	9	59	45	1	0	52	1.10
312758--312842	22	4.0	23	72	21	60	45	1	1	51	1.16
313297--313407	30	3.8	28	76	9	107	48	1	9	40	1.45
317499--317532	14	2.3	15	90	5	52	32	0	0	67	0.91
317560--317597	20	1.9	19	89	5	58	39	0	2	57	1.12
317577--317640	20	3.4	20	70	12	55	40	1	0	57	1.08
318486--318589	23	4.3	23	70	15	77	66	1	0	31	1.03
318532--318596	28	2.3	28	87	10	89	69	1	1	27	1.07
318531--318572	16	2.6	17	81	11	52	71	0	0	28	0.86
322532--322557	11	2.4	11	100	0	52	19	0	0	80	0.71
324213--324250	19	2.0	20	94	5	69	44	0	0	55	0.99
324180--324279	53	1.9	50	86	6	137	47	0	4	49	1.20
324211--324250	10	4.0	10	83	9	55	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
327862--327904	21	2.3	17	84	15	50	44	0	0	55	0.99
329537--329582	19	2.6	18	86	6	58	41	2	2	54	1.25
329539--329596	19	3.2	17	82	9	53	37	1	1	58	1.18
330825--330906	16	5.2	16	72	8	78	40	1	4	53	1.30
330825--330962	37	3.9	36	76	12	108	44	1	2	51	1.25
330883--330912	14	2.1	15	93	6	53	40	0	3	56	1.16
330920--330976	19	3.0	20	78	16	61	56	0	0	43	0.99
334033--334077	21	2.1	21	95	0	81	40	0	13	46	1.43
341587--341653	28	2.4	27	73	14	64	43	1	2	52	1.25
341620--341666	21	2.2	21	85	11	60	44	4	0	51	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19