genome.fa.s221.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold221
Parameters: 2 7 7 80 10 50 1000
Length:  2539808

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   

This is table  16  of  19  ( 2279 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1902826--1902886	18	3.4	18	77	4	52	50	0	3	45	1.17
1902911--1902982	31	2.5	26	72	23	63	48	4	0	47	1.21
1902996--1903027	15	2.0	17	88	11	50	71	0	0	28	0.86
1903951--1903999	22	2.2	24	78	14	59	57	0	4	38	1.18
1907488--1907674	34	5.5	33	80	9	225	41	27	7	24	1.81
1907490--1907674	68	2.7	68	91	0	291	41	27	7	24	1.82
1911740--1911802	19	3.3	19	90	0	90	34	19	17	28	1.94
1912106--1912290	34	5.5	33	80	10	221	41	27	7	23	1.81
1912108--1912290	68	2.7	68	91	0	287	40	27	7	24	1.82
1914751--1914788	15	2.5	15	86	0	58	57	5	0	36	1.21
1915941--1915989	26	2.0	25	84	11	66	51	2	0	46	1.12
1917422--1917462	20	2.0	20	95	0	73	46	0	2	51	1.14
1918076--1918106	2	16.0	2	93	6	55	48	0	0	51	1.00
1921231--1921299	25	2.8	25	82	6	88	39	0	1	59	1.06
1927202--1927231	2	14.5	2	93	6	51	50	0	3	46	1.18
1929466--1929492	2	13.5	2	100	0	54	51	48	0	0	1.00
1930466--1930520	21	2.5	21	79	5	65	49	0	0	50	1.00
1933604--1933660	22	2.6	22	77	0	60	42	1	0	56	1.10
1937556--1937588	2	16.5	2	100	0	66	51	0	0	48	1.00
1938552--1938582	2	16.0	2	93	6	55	51	0	0	48	1.00
1938726--1938757	2	16.0	2	100	0	64	50	0	0	50	1.00
1944106--1944176	30	2.2	33	82	7	94	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1949189--1949214	6	4.3	6	100	0	52	69	0	30	0	0.89
1952620--1952652	14	2.3	15	89	5	50	21	18	3	57	1.53
1952741--1952767	2	13.5	2	100	0	54	51	0	0	48	1.00
1953437--1953480	6	7.3	6	89	0	52	34	20	43	2	1.64
1953446--1953480	3	11.7	3	87	0	52	34	25	40	0	1.56
1961610--1961637	2	14.0	2	100	0	56	50	0	0	50	1.00
1962187--1962214	2	14.0	2	100	0	56	50	0	0	50	1.00
1962665--1962690	11	2.4	11	100	0	52	38	0	0	61	0.96
1963948--1963980	3	11.0	3	87	12	50	33	0	3	63	1.10
1963943--1963981	12	3.2	12	85	10	53	33	0	7	58	1.26
1980667--1980696	4	7.5	4	92	0	51	23	46	26	3	1.68
1981147--1981215	34	2.0	34	100	0	138	46	23	11	18	1.82
1981903--1981935	2	16.5	2	100	0	66	48	0	0	51	1.00
1981933--1981973	4	9.8	4	84	10	55	26	0	24	48	1.51
1982760--1982807	2	24.0	2	95	0	87	47	0	2	50	1.12
1985283--1985317	3	11.3	3	93	6	61	34	0	0	65	0.93
1991176--1991442	133	2.0	133	100	0	534	28	21	12	37	1.90
1994756--1994795	19	2.1	19	85	0	53	57	7	22	12	1.60
1995830--1995906	25	3.2	25	63	20	65	38	38	11	10	1.76
1995795--1995916	46	2.7	46	93	0	208	41	33	11	13	1.80
1997055--1997469	206	2.0	206	99	0	812	29	20	19	31	1.97
1998193--1998277	22	3.8	24	79	16	92	49	0	4	45	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1998286--1998334	15	3.1	16	77	11	57	51	8	6	34	1.57
1999544--1999581	12	3.2	12	81	11	51	15	21	2	60	1.47
2007717--2007742	2	13.0	2	100	0	52	50	0	0	50	1.00
2008541--2008586	22	2.0	22	83	4	56	23	6	0	69	1.11
2012218--2012292	8	9.0	8	69	13	53	68	4	2	25	1.21
2013827--2013861	16	2.2	16	89	0	52	34	17	8	40	1.80
2014698--2014725	2	14.0	2	100	0	56	50	0	0	50	1.00
2016318--2016507	95	2.0	95	98	0	371	30	20	9	39	1.84
2016352--2016546	95	2.1	94	81	7	225	33	22	8	36	1.84
2026707--2026733	6	4.5	6	100	0	54	37	14	14	33	1.88
2030874--2031551	116	6.0	116	79	9	731	26	14	18	40	1.89
2030874--2031536	231	3.0	221	83	7	733	26	14	18	40	1.89
2031145--2031536	214	1.8	213	85	7	562	26	14	17	42	1.87
2032745--2032788	12	3.5	13	81	9	56	31	0	2	65	1.05
2033167--2033213	23	2.0	23	95	0	85	31	19	17	31	1.94
2037462--2037486	5	5.0	5	100	0	50	80	0	0	20	0.72
2037898--2037927	5	6.0	5	92	0	51	43	0	56	0	0.99
2041057--2041126	2	34.5	2	73	2	59	45	5	4	44	1.47
2041315--2041358	22	2.0	22	82	8	54	43	4	2	50	1.35
2047514--2047549	18	2.0	18	100	0	72	38	16	44	0	1.48
2053385--2053430	21	2.2	21	88	0	65	50	0	0	50	1.00
2053387--2053419	17	2.0	17	88	5	50	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2053383--2053447	27	2.4	27	82	7	71	49	3	1	46	1.27
2053524--2053551	14	2.0	14	100	0	56	42	0	0	57	0.99
2053966--2053995	2	15.0	2	100	0	60	50	0	0	50	1.00
2060708--2060737	2	15.0	2	100	0	60	50	0	0	50	1.00
2062166--2062237	34	2.1	34	82	7	85	58	9	6	25	1.55
2064565--2064597	3	11.0	3	93	0	57	63	3	33	0	1.10
2065134--2065160	6	4.5	6	100	0	54	18	0	48	33	1.49
2065125--2065174	18	2.8	18	75	0	55	24	8	46	22	1.78
2068015--2068042	2	14.0	2	100	0	56	50	0	50	0	1.00
2068522--2068564	6	7.2	6	91	0	68	13	30	37	18	1.90
2079008--2079038	2	15.5	2	100	0	62	51	0	0	48	1.00
2079474--2079499	2	13.0	2	100	0	52	50	0	0	50	1.00
2079692--2079722	2	15.5	2	100	0	62	51	0	0	48	1.00
2081097--2081124	2	14.0	2	100	0	56	50	0	0	50	1.00
2081197--2081222	2	13.0	2	100	0	52	50	0	0	50	1.00
2081815--2081839	6	4.2	6	100	0	50	0	52	0	48	1.00
2092407--2092451	2	22.5	2	100	0	90	51	0	48	0	1.00
2092559--2092620	3	20.7	3	86	6	90	32	0	1	66	1.02
2092796--2092869	28	2.7	27	78	14	71	41	0	0	58	0.98
2092818--2092868	27	2.0	24	85	11	66	39	0	0	60	0.97
2092846--2092897	17	3.1	16	74	17	52	38	0	1	59	1.08
2105429--2105464	2	18.0	2	100	0	72	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2110717--2110754	15	2.4	16	82	8	51	68	0	0	31	0.90
2112024--2112065	22	1.9	22	85	9	59	45	0	7	47	1.30
2112157--2112205	16	3.1	16	78	0	62	55	14	2	28	1.51
2112159--2112282	16	7.8	16	70	16	60	60	8	3	28	1.41
2112956--2113001	17	2.8	17	80	3	58	60	4	0	34	1.16
2114249--2114280	2	16.5	2	93	6	57	53	0	0	46	1.00
2114829--2114874	2	23.0	2	83	16	60	50	4	0	45	1.21
2115823--2115866	2	22.0	2	90	0	70	47	2	0	50	1.13
2116353--2116439	10	8.2	11	74	18	53	63	0	3	33	1.11
2116408--2116477	30	2.3	30	81	15	83	60	2	0	37	1.12
2116767--2116823	14	4.1	14	73	13	55	61	0	0	38	0.96
2116769--2116824	28	2.0	29	86	6	80	62	0	0	37	0.95
2117220--2117268	21	2.3	22	86	10	66	46	4	32	16	1.65
2117261--2117295	2	17.5	2	100	0	70	48	0	51	0	1.00
2120178--2120212	2	17.5	2	100	0	70	48	0	0	51	1.00
2124023--2124052	12	2.5	12	100	0	60	6	33	0	60	1.23
2134155--2134214	3	20.0	3	92	0	66	25	1	8	65	1.30
2134582--2134620	16	2.5	15	84	8	51	61	0	0	38	0.96
2137666--2137691	3	8.7	3	100	0	52	65	0	0	34	0.93
2137753--2137780	2	14.0	2	100	0	56	0	50	0	50	1.00
2138862--2138892	2	15.5	2	100	0	62	48	0	0	51	1.00
2146342--2146509	84	2.0	84	97	0	318	36	21	8	33	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2147464--2147501	20	1.9	20	89	10	60	18	13	0	68	1.21
2147870--2147894	2	12.5	2	100	0	50	0	0	48	52	1.00
2157292--2157323	2	16.0	2	93	0	55	50	3	0	46	1.17
2162175--2162207	17	1.9	17	88	11	50	36	3	0	60	1.12
2162162--2162207	18	2.4	20	82	7	60	34	4	0	60	1.16
2162415--2162444	3	10.3	3	92	7	53	70	0	0	30	0.88
2162414--2162442	14	2.1	14	100	0	58	72	0	0	27	0.85
2163186--2163238	24	2.4	22	79	14	63	49	0	7	43	1.31
2168703--2168747	10	4.5	10	83	8	56	55	2	0	42	1.12
2168703--2168790	15	5.9	16	73	21	68	53	2	1	43	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19