genome.fa.s221.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold221
Parameters: 2 7 7 80 10 50 1000
Length:  2539808

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   

This is table  8  of  19  ( 2279 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
964880--964942	22	3.1	20	76	10	65	42	1	0	55	1.09
965213--965274	14	4.6	13	73	18	56	46	1	6	45	1.38
965212--965291	40	2.0	40	95	0	142	47	2	6	43	1.41
965544--965595	27	2.1	26	86	13	74	59	3	3	32	1.33
965864--965890	14	1.9	14	100	0	54	59	0	0	40	0.98
970757--970814	21	2.7	23	76	13	59	55	0	0	44	0.99
970848--970905	22	2.7	22	72	2	64	68	0	1	29	0.99
971295--971406	9	12.0	9	72	12	57	45	0	2	50	1.21
971295--971364	29	2.4	30	75	17	76	41	1	2	54	1.24
971343--971384	22	1.9	22	85	0	57	47	0	0	52	1.00
971367--971420	5	11.0	5	74	18	51	55	1	1	40	1.21
971343--971423	18	3.7	23	75	20	75	50	1	1	46	1.17
971377--971423	26	1.9	25	87	12	71	53	2	2	42	1.25
973240--973281	2	21.0	2	85	0	57	45	0	7	47	1.30
974511--974539	14	2.0	15	93	6	51	48	0	3	48	1.18
977156--977216	22	2.7	22	83	16	72	45	0	0	54	1.00
977143--977214	25	2.8	25	76	12	74	48	0	1	50	1.09
978214--978253	19	2.0	19	85	9	53	55	0	2	42	1.13
982144--982183	15	2.6	16	88	8	64	55	0	0	45	0.99
983255--983296	21	2.0	21	90	9	68	30	0	0	69	0.89
983259--983296	10	3.7	10	80	19	51	31	0	0	68	0.90
983615--983656	21	2.0	21	90	9	68	57	0	0	42	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
983795--983837	14	3.2	14	80	6	54	44	0	0	55	0.99
983802--983840	14	2.7	15	84	7	55	41	0	0	58	0.98
984071--984206	11	12.8	11	70	19	85	34	0	0	63	1.05
984082--984201	17	6.8	17	73	20	79	34	0	0	65	0.99
984070--984201	38	3.6	36	75	21	112	34	0	0	64	0.99
984118--984185	28	2.4	29	85	7	88	35	1	0	63	1.04
985206--985279	35	2.0	38	80	12	84	48	0	0	51	1.00
987163--987200	17	2.2	18	85	4	51	50	0	7	42	1.31
988542--988575	17	2.0	17	88	0	50	32	2	0	64	1.08
989383--989449	28	2.3	28	87	12	91	53	0	2	43	1.16
989336--989499	31	5.1	32	67	21	87	56	0	1	41	1.14
989898--989960	21	3.2	20	70	22	62	53	1	0	44	1.10
990332--990369	2	19.0	2	100	0	76	50	0	0	50	1.00
991771--991811	21	1.9	21	85	14	57	36	0	0	63	0.95
991907--991985	33	2.4	32	82	16	90	44	0	0	55	0.99
991933--991990	15	3.7	15	72	19	55	48	0	0	51	1.00
992750--992820	36	2.0	35	88	2	106	39	1	1	57	1.16
992765--992838	17	4.4	17	71	15	55	36	1	1	60	1.13
992760--992824	12	5.5	12	73	8	62	35	1	1	61	1.15
992801--992849	12	3.3	15	81	13	50	38	0	0	61	0.96
992886--992930	20	2.2	21	88	11	67	46	4	2	46	1.35
994052--994125	24	3.0	25	81	13	75	54	1	0	44	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
994190--994219	13	2.3	13	94	0	51	30	3	0	66	1.07
994836--994881	23	2.0	23	91	4	76	67	0	0	32	0.91
995649--995673	13	1.9	13	100	0	50	36	0	0	64	0.94
996118--996176	30	2.0	30	89	0	91	54	0	1	44	1.10
996353--996450	7	13.1	7	74	12	79	62	1	1	35	1.09
996829--996882	28	1.9	28	88	0	81	40	14	22	22	1.90
996483--997245	386	2.0	391	90	4	1229	47	6	9	35	1.63
1006514--1006596	37	2.2	37	80	4	105	53	6	0	40	1.26
1006836--1006869	17	2.1	16	89	10	52	50	0	0	50	1.00
1008334--1008384	20	2.6	19	82	11	59	60	0	0	39	0.97
1008342--1008391	21	2.4	22	83	6	68	56	0	0	44	0.99
1009465--1009503	16	2.6	14	92	8	60	76	0	20	2	0.90
1009461--1009517	20	2.9	20	86	2	80	82	0	15	1	0.75
1009458--1009515	16	3.8	16	71	11	59	82	0	15	1	0.74
1009461--1009517	10	5.7	10	78	0	69	82	0	15	1	0.75
1014150--1014997	27	31.0	27	90	2	1302	23	34	13	28	1.93
1014150--1014997	82	10.3	81	91	2	1302	23	34	13	28	1.93
1014150--1014997	109	7.8	108	91	2	1302	23	34	13	28	1.93
1014980--1015453	32	14.8	32	92	0	761	31	33	17	17	1.94
1015973--1016006	18	1.9	17	88	5	50	82	8	5	2	0.93
1016676--1016726	14	3.4	15	78	15	52	76	0	21	1	0.88
1016673--1016728	17	3.3	17	74	0	58	78	0	19	1	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1019564--1019614	24	2.1	25	88	3	77	47	0	0	52	1.00
1019977--1020030	17	3.3	17	72	25	53	59	1	0	38	1.08
1022143--1022196	22	2.6	22	80	13	62	62	1	1	33	1.16
1022140--1022191	11	4.8	11	76	19	56	63	1	1	32	1.16
1022628--1022689	28	2.2	27	83	8	79	40	3	1	54	1.26
1022628--1022709	29	2.9	27	80	10	83	41	2	1	54	1.21
1024233--1024293	22	2.7	22	87	2	77	52	14	0	32	1.42
1024307--1024364	23	2.5	22	81	13	64	74	3	0	22	0.97
1024311--1024364	18	2.9	18	83	8	56	72	3	0	24	1.01
1024290--1024360	27	2.6	27	82	13	65	70	5	1	22	1.16
1025857--1025922	21	3.2	21	70	10	64	56	0	0	43	0.99
1027436--1027473	20	1.9	20	88	0	58	42	5	0	52	1.24
1028380--1028414	8	4.2	8	89	7	52	42	0	0	57	0.99
1028378--1028496	16	7.5	15	77	9	103	42	0	0	56	1.05
1028422--1028555	37	3.8	36	73	18	93	43	2	0	52	1.21
1028395--1028484	32	2.8	31	88	8	126	38	1	0	60	1.04
1028428--1028531	22	4.3	23	75	18	88	44	1	0	53	1.11
1028928--1028976	23	2.1	23	82	14	57	55	0	2	42	1.11
1028981--1029031	13	3.8	13	80	12	59	62	1	0	35	1.06
1029504--1029568	6	10.8	6	75	18	64	44	0	1	53	1.09
1029504--1029568	19	3.6	18	77	12	71	44	0	1	53	1.09
1029515--1029565	10	5.0	10	76	9	50	43	0	1	54	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1029504--1029576	19	4.1	19	72	15	66	43	0	1	54	1.08
1029514--1029579	22	3.1	21	76	12	73	39	0	1	59	1.07
1029821--1029857	16	2.4	16	86	4	58	40	0	0	59	0.97
1029889--1029934	18	2.6	19	80	13	53	43	0	0	56	0.99
1030695--1030754	31	1.9	31	93	6	104	20	25	11	43	1.85
1030916--1030955	19	2.2	18	95	4	71	35	0	0	65	0.93
1031607--1031679	25	3.0	25	71	13	73	47	0	0	52	1.00
1031822--1031876	26	2.1	26	83	12	69	65	0	5	29	1.15
1031831--1031885	21	2.4	23	73	11	60	63	0	1	34	1.05
1031832--1031891	31	1.9	32	83	10	79	61	0	1	36	1.06
1031857--1031923	16	3.9	17	75	16	59	56	0	0	43	0.99
1032641--1032681	21	1.9	21	85	14	57	63	0	0	36	0.95
1033044--1033089	24	1.9	24	86	8	67	56	0	0	43	0.99
1033157--1033214	27	2.1	28	81	15	68	43	0	0	56	0.99
1033281--1033335	24	2.2	25	74	3	58	47	1	0	50	1.11
1033309--1033417	53	2.0	54	81	8	125	55	1	0	42	1.10
1033378--1033422	16	2.5	19	80	20	53	64	0	0	35	0.94
1034848--1034923	13	6.1	13	72	14	70	53	1	0	44	1.08
1034849--1034894	22	2.1	22	87	0	65	52	2	0	45	1.13
1034933--1034990	21	2.8	21	86	5	73	62	1	0	36	1.06
1034960--1035012	14	3.8	13	80	14	52	54	1	0	43	1.11
1035312--1035369	28	2.1	29	81	12	68	37	1	1	58	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1035432--1035467	19	1.9	18	88	5	54	52	0	0	47	1.00
1036762--1036795	4	8.2	4	90	3	50	52	0	0	47	1.00
1038984--1039058	20	3.8	20	78	0	87	34	13	12	40	1.81
1038984--1039061	40	2.0	39	87	2	111	34	12	12	39	1.82
1039974--1040029	22	2.5	23	94	5	105	17	10	8	62	1.52
1039982--1040036	22	2.6	21	88	5	58	20	9	9	61	1.52
1053774--1053838	8	8.4	8	80	8	64	86	7	4	1	0.77
1053773--1053838	28	2.2	30	86	7	91	84	9	4	1	0.81
1053777--1053818	17	2.5	17	88	0	66	88	9	2	0	0.61
1053774--1053828	25	2.3	24	84	6	76	89	7	3	0	0.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19