genome.fa.s30.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold30
Parameters: 2 7 7 80 10 50 1000
Length:  2650045

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  13  of  17  ( 1999 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2003881--2003943	32	2.0	32	96	0	117	33	12	17	36	1.88
2003987--2004011	13	1.9	13	100	0	50	32	16	16	36	1.90
2013624--2014165	28	19.2	28	78	11	488	30	29	15	24	1.96
2013771--2013866	48	2.0	47	82	6	113	30	31	15	22	1.95
2013846--2014205	29	12.2	30	79	9	300	29	28	16	25	1.96
2013846--2014205	28	12.2	29	79	10	301	29	28	16	25	1.96
2013846--2014205	55	6.1	59	79	11	289	29	28	16	25	1.96
2014506--2014573	19	3.9	19	78	21	85	35	11	14	38	1.83
2014527--2014551	13	1.9	13	100	0	50	36	16	16	32	1.90
2014508--2014570	32	2.0	32	96	0	117	34	12	15	36	1.86
2014613--2014638	13	2.0	13	100	0	52	30	15	15	38	1.88
2014593--2014659	33	2.0	33	88	0	98	25	14	16	43	1.86
2017109--2017181	27	2.7	27	87	6	94	23	31	21	23	1.98
2017164--2017386	52	4.3	50	78	8	205	29	24	11	34	1.91
2017374--2017445	28	2.6	28	86	8	94	23	34	18	23	1.96
2016995--2017496	264	1.9	263	88	2	758	28	26	13	31	1.94
2019674--2019707	4	8.5	4	90	0	50	26	2	0	70	1.01
2024331--2024364	17	2.0	17	88	0	50	50	14	26	8	1.72
2029422--2029484	1	63.0	1	80	0	72	90	6	3	0	0.54
2029422--2029478	21	2.8	20	87	10	87	91	7	1	0	0.49
2029422--2029484	15	4.1	15	86	8	83	90	6	3	0	0.54
2030454--2031511	55	18.2	61	83	10	1198	25	29	20	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2030454--2031511	115	9.1	117	87	7	1157	25	29	20	23	1.99
2031250--2031337	29	3.1	29	62	15	76	26	34	19	20	1.96
2032291--2032358	19	3.9	19	78	21	85	35	11	14	38	1.83
2032312--2032336	13	1.9	13	100	0	50	36	16	16	32	1.90
2032293--2032355	32	2.0	32	96	0	117	34	12	15	36	1.86
2032398--2032423	13	2.0	13	100	0	52	30	15	15	38	1.88
2032378--2032444	33	2.0	33	85	0	89	25	13	16	44	1.84
2034791--2034916	51	2.4	52	84	7	166	33	25	10	30	1.89
2034849--2034999	82	1.9	81	84	4	207	29	27	14	27	1.95
2034931--2035153	52	4.3	53	82	5	222	30	26	12	31	1.92
2034789--2035235	236	1.9	236	89	2	693	29	26	12	31	1.93
2039980--2040178	97	2.1	97	92	0	326	27	25	12	34	1.92
2050252--2050276	13	1.9	13	100	0	50	36	16	16	32	1.90
2050318--2050384	33	2.0	33	85	0	89	40	16	11	31	1.85
2050929--2051302	169	2.2	171	82	5	425	36	14	25	23	1.92
2051141--2051590	52	9.1	51	79	11	440	33	15	25	25	1.95
2051360--2051635	43	6.1	43	78	11	275	31	17	25	25	1.97
2051312--2051630	92	3.4	92	89	2	469	31	17	25	26	1.97
2051628--2051829	32	6.3	32	87	8	304	18	17	35	27	1.94
2051637--2051822	97	1.9	96	96	1	345	17	19	34	29	1.94
2051837--2051890	27	2.0	27	85	0	72	31	12	31	24	1.93
2051857--2052765	68	13.4	68	88	3	1321	36	11	32	20	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2051890--2052760	34	25.7	34	85	5	1145	36	11	32	19	1.88
2052888--2052916	8	3.6	8	100	0	58	27	10	24	37	1.88
2053745--2053807	27	2.4	27	89	7	94	0	6	9	84	0.79
2053745--2053808	17	3.6	17	78	14	67	0	6	10	82	0.82
2053748--2053805	22	2.6	22	81	13	73	0	5	10	84	0.77
2054431--2054880	52	9.1	51	80	9	431	34	15	24	25	1.95
2054650--2054925	43	6.1	43	78	11	293	30	17	25	25	1.97
2054598--2054920	92	3.5	92	90	2	486	31	17	25	26	1.97
2054918--2055087	32	5.3	32	88	6	247	20	17	35	27	1.94
2055095--2055148	27	2.0	27	88	0	81	35	14	29	20	1.93
2059676--2059704	12	2.3	13	94	5	51	89	10	0	0	0.48
2060997--2061453	28	16.1	28	89	2	546	31	27	16	24	1.96
2060997--2061470	85	5.5	85	85	5	566	32	27	16	24	1.96
2062467--2062503	18	1.9	19	89	10	58	81	16	2	0	0.81
2062467--2062500	9	3.8	9	88	0	50	85	14	0	0	0.60
2063635--2063673	9	4.6	8	90	6	51	48	23	2	25	1.63
2063641--2063672	9	3.7	9	95	4	57	53	25	0	21	1.46
2063746--2064049	30	10.0	30	82	7	308	24	28	15	31	1.96
2063750--2064049	94	3.3	89	81	6	307	24	28	16	31	1.96
2063746--2064058	120	2.6	121	86	5	407	23	28	15	32	1.95
2064085--2064123	20	2.0	20	94	0	69	30	33	5	30	1.79
2064173--2064225	27	2.0	27	92	0	88	24	33	13	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2064105--2064530	33	12.7	33	77	12	386	19	30	13	36	1.90
2064178--2064508	176	1.9	172	86	6	470	19	29	13	36	1.91
2064304--2064393	45	2.0	45	89	2	137	24	27	12	35	1.91
2064349--2064539	32	5.8	32	78	12	199	19	32	13	35	1.90
2064271--2064426	77	2.0	78	89	1	242	21	29	13	35	1.91
2064238--2064458	110	2.0	110	89	1	336	20	29	13	36	1.91
2064205--2064483	143	1.9	144	87	3	411	20	29	13	36	1.91
2064536--2065360	49	17.9	48	74	13	580	25	25	17	31	1.97
2064533--2065367	87	9.1	92	79	9	602	25	25	17	31	1.97
2064822--2065112	39	7.0	39	76	14	251	28	26	18	27	1.98
2064822--2065112	126	2.3	126	90	1	440	28	26	18	27	1.98
2065170--2065421	98	2.5	98	80	6	247	24	25	14	35	1.93
2066231--2066256	13	2.0	13	100	0	52	38	15	15	30	1.88
2066281--2066362	20	3.8	21	82	14	78	34	15	12	37	1.85
2073927--2074160	97	2.4	97	81	4	303	28	27	11	32	1.91
2075423--2075453	16	1.9	16	93	0	53	35	9	0	54	1.33
2080182--2080234	20	2.7	20	80	16	65	32	20	13	33	1.91
2080284--2080308	13	1.9	13	100	0	50	36	16	16	32	1.90
2082902--2082964	33	1.9	33	86	0	90	31	17	15	34	1.92
2086900--2086925	13	2.0	13	100	0	52	30	15	15	38	1.88
2086914--2086966	21	2.7	20	82	8	72	32	15	13	39	1.85
2087435--2087473	3	13.0	3	94	0	69	35	0	33	30	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2093923--2093965	23	1.9	22	85	4	59	37	2	18	41	1.63
2093892--2093950	31	1.9	31	86	6	84	33	8	16	40	1.79
2094520--2094577	13	4.9	13	70	23	56	32	15	15	36	1.89
2094517--2094596	33	2.5	32	91	6	126	30	16	15	38	1.89
2094562--2094618	19	3.0	20	84	7	82	33	15	17	33	1.92
2095964--2096026	32	2.0	32	81	12	76	20	11	15	52	1.73
2098815--2098867	26	2.0	26	92	0	88	64	9	20	5	1.44
2099615--2099833	58	3.8	57	80	3	240	45	16	10	27	1.80
2099810--2099931	65	1.9	64	89	1	190	38	20	17	23	1.93
2103104--2103187	21	4.0	20	74	20	64	75	1	19	4	1.05
2103899--2104148	58	4.3	58	80	5	222	28	14	12	44	1.81
2104249--2104706	78	6.0	76	75	8	329	30	12	19	37	1.89
2104911--2104950	21	1.9	21	100	0	80	35	12	10	42	1.76
2105019--2105063	20	2.2	20	96	0	81	35	13	11	40	1.80
2111074--2111131	31	2.0	29	86	10	82	41	18	3	36	1.68
2111834--2112388	33	16.8	33	70	15	215	21	31	11	35	1.90
2111824--2111990	63	2.6	64	75	11	162	22	29	11	36	1.90
2111952--2112508	33	17.0	30	73	15	296	22	31	11	35	1.89
2112026--2112109	41	2.0	42	86	2	116	26	28	11	33	1.92
2112065--2112511	67	6.9	67	81	6	415	22	32	10	34	1.89
2112356--2112415	27	2.2	27	84	0	75	23	31	10	35	1.88
2112641--2112834	32	6.0	31	77	14	171	30	32	16	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2112641--2112828	64	2.9	63	86	7	254	30	32	15	20	1.94
2112651--2112831	96	1.9	96	84	7	242	30	32	17	19	1.95
2112838--2113241	43	8.7	43	76	14	340	24	25	18	31	1.97
2112838--2113300	43	9.8	47	76	10	284	25	25	17	32	1.97
2112838--2113163	95	3.5	93	85	7	423	24	25	18	31	1.97
2112935--2113241	95	3.4	86	80	11	326	25	26	17	30	1.97
2112935--2113302	95	4.0	93	80	11	309	25	25	17	31	1.97
2113021--2113348	147	2.2	147	83	3	410	25	25	16	32	1.96
2115344--2115406	32	1.9	34	87	12	96	38	14	15	31	1.88
2116982--2117012	3	10.3	3	92	0	53	35	0	35	29	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17