genome.fa.s30.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold30
Parameters: 2 7 7 80 10 50 1000
Length:  2650045

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  17  of  17  ( 1999 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2568447--2568471	13	1.9	13	100	0	50	32	16	16	36	1.90
2569375--2569402	13	2.2	13	100	0	56	39	17	14	28	1.89
2569357--2569422	33	2.0	33	85	5	89	39	12	16	31	1.85
2572365--2572406	21	2.0	21	86	4	59	21	9	16	52	1.72
2575032--2575085	21	2.7	21	85	5	76	37	12	16	33	1.87
2575136--2575163	13	2.2	13	100	0	56	28	14	17	39	1.89
2575116--2575181	33	2.0	33	88	5	98	30	15	13	40	1.85
2575454--2575508	22	2.5	22	96	0	101	32	25	10	30	1.90
2579446--2579488	18	2.4	17	77	11	50	20	4	0	74	1.00
2579895--2580015	60	2.0	60	93	0	206	35	7	9	47	1.63
2582958--2583010	20	2.7	20	85	2	72	30	15	16	37	1.90
2583060--2583084	13	1.9	13	100	0	50	44	16	8	32	1.76
2583042--2583104	33	1.9	33	87	6	92	38	12	15	33	1.86
2583989--2584055	37	1.9	35	88	11	102	28	25	13	32	1.93
2584514--2584539	13	2.0	13	100	0	52	30	15	15	38	1.88
2584495--2584557	32	2.0	32	87	6	92	28	15	14	41	1.87
2584578--2584653	21	3.7	21	80	3	100	28	17	11	42	1.84
2584599--2584671	20	3.6	20	81	3	101	31	19	13	35	1.91
2584578--2584671	41	2.3	41	98	0	179	29	18	12	39	1.88
2586288--2586312	13	1.9	13	100	0	50	32	16	16	36	1.90
2587849--2588016	84	2.0	83	81	5	196	24	19	3	52	1.62
2589535--2589601	37	1.9	35	88	11	102	28	25	13	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2590060--2590085	13	2.0	13	100	0	52	30	15	15	38	1.88
2590041--2590103	32	2.0	32	87	6	92	28	15	14	41	1.87
2590124--2590199	21	3.7	21	80	3	100	28	17	11	42	1.84
2590145--2590217	20	3.6	20	81	3	101	31	19	13	35	1.91
2590124--2590217	41	2.3	41	98	0	179	29	18	12	39	1.88
2591448--2591481	3	11.3	3	87	0	50	38	0	32	29	1.58
2595991--2596017	13	2.1	13	100	0	54	40	14	14	29	1.86
2598494--2598518	13	1.9	13	100	0	50	36	16	16	32	1.90
2598473--2598537	33	2.0	32	88	8	96	30	15	15	38	1.88
2598589--2598613	13	1.9	13	100	0	50	36	16	16	32	1.90
2600416--2600771	79	4.5	79	84	2	403	28	26	12	33	1.93
2600416--2600771	157	2.3	157	82	2	428	28	26	12	33	1.93
2609730--2609754	13	1.9	13	100	0	50	36	16	16	32	1.90
2609710--2609776	33	2.0	33	88	0	98	32	11	14	40	1.83
2609817--2609841	13	1.9	13	100	0	50	32	16	16	36	1.90
2609850--2609969	52	2.3	52	95	0	213	35	19	17	28	1.94
2616906--2616954	7	7.1	7	86	9	66	85	14	0	0	0.59
2616902--2616956	17	3.2	17	82	10	67	85	14	0	0	0.60
2616906--2616957	25	2.0	27	88	7	81	86	13	0	0	0.57
2616902--2616957	18	3.1	18	82	17	71	85	14	0	0	0.59
2617196--2617239	18	2.5	18	81	3	54	79	6	11	2	1.01
2618178--2618629	34	13.5	34	83	9	481	20	34	12	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2618177--2618615	67	6.6	65	80	12	409	20	34	12	33	1.89
2618185--2618629	105	4.4	101	80	13	483	20	34	12	32	1.90
2618613--2618678	33	2.0	33	100	0	132	27	33	18	21	1.96
2618681--2619236	49	11.7	49	87	7	767	24	26	18	30	1.98
2618681--2619236	92	5.9	93	89	6	702	24	26	18	30	1.98
2618681--2619236	237	2.4	232	92	4	909	24	26	18	30	1.98
2619150--2619538	55	6.8	54	70	15	243	24	24	14	36	1.93
2619150--2619533	67	6.7	55	73	14	273	24	23	14	37	1.93
2619150--2619544	171	2.3	171	95	1	700	24	24	14	36	1.93
2620333--2620357	13	1.9	13	100	0	50	36	16	16	32	1.90
2620313--2620379	33	2.0	33	88	0	98	32	11	14	40	1.83
2620420--2620444	13	1.9	13	100	0	50	32	16	16	36	1.90
2620453--2620572	52	2.3	52	95	0	213	35	19	17	28	1.94
2627506--2627549	6	7.2	6	82	14	54	84	15	0	0	0.63
2627502--2627551	8	6.4	8	80	13	59	84	16	0	0	0.63
2627506--2627552	23	2.0	24	91	4	78	85	14	0	0	0.61
2627791--2627834	18	2.5	18	81	3	54	79	6	11	2	1.01
2628773--2629224	34	13.5	34	83	9	481	20	34	12	32	1.90
2628772--2629210	67	6.6	65	80	12	409	20	34	12	33	1.89
2628780--2629224	105	4.4	101	80	13	483	20	34	12	32	1.90
2629208--2629273	33	2.0	33	100	0	132	27	33	18	21	1.96
2629276--2629823	49	11.7	48	84	10	692	25	26	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2629276--2629823	237	2.4	228	90	6	834	25	26	18	30	1.98
2629737--2630045	55	5.6	55	73	14	233	24	23	14	36	1.93
2629737--2630131	171	2.3	171	94	1	682	24	24	14	37	1.92
2630920--2630944	13	1.9	13	100	0	50	36	16	16	32	1.90
2630900--2630966	33	2.0	33	88	0	98	32	11	14	40	1.83
2631007--2631031	13	1.9	13	100	0	50	32	16	16	36	1.90
2631040--2631159	52	2.3	52	92	0	195	35	17	17	30	1.93
2635098--2635139	16	2.6	16	88	0	66	73	9	0	16	1.08
2636159--2636197	13	3.0	13	100	0	78	38	15	15	30	1.88
2638365--2638744	154	2.5	155	78	4	417	38	18	17	25	1.93
2640940--2640985	23	2.0	23	100	0	92	60	17	4	17	1.51
2642577--2642645	36	2.0	34	85	5	93	69	5	7	17	1.32
2647572--2647622	18	2.7	18	87	6	66	31	11	13	43	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17

The End!