genome.fa.s320.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold320
Parameters: 2 7 7 80 10 50 1000
Length:  2598547

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  14  of  17  ( 1971 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1990032--1990078	2	23.5	2	100	0	94	48	0	0	51	1.00
1990946--1990979	2	17.0	2	93	0	59	0	2	50	47	1.16
1991864--1991901	15	2.5	16	83	12	53	15	0	2	81	0.80
1991864--1991995	8	16.2	8	72	16	60	25	0	4	69	1.12
1991931--1991984	24	2.2	24	83	0	72	20	1	7	70	1.21
1993283--1993335	21	2.5	21	81	9	54	32	11	3	52	1.55
1995276--1995314	2	19.5	2	100	0	78	51	0	0	48	1.00
1998914--1998938	2	12.5	2	100	0	50	48	0	0	52	1.00
1999964--1999994	16	1.9	16	100	0	62	35	0	0	64	0.94
2006054--2006108	20	2.8	20	85	0	74	38	14	12	34	1.84
2008622--2008658	2	18.5	2	89	10	58	48	2	0	48	1.15
2008897--2008924	2	14.0	2	100	0	56	50	0	0	50	1.00
2009691--2009734	2	22.5	2	86	4	63	45	2	2	50	1.27
2012336--2012363	2	14.0	2	100	0	56	50	0	0	50	1.00
2013160--2013221	2	31.0	2	93	0	106	53	0	0	46	1.00
2016152--2016177	1	26.0	1	100	0	52	100	0	0	0	0.00
2020859--2020894	2	18.0	2	100	0	72	50	0	0	50	1.00
2024434--2024478	22	2.2	22	88	11	69	48	2	0	48	1.13
2024480--2024538	30	2.0	31	83	12	79	37	1	1	59	1.18
2024511--2024557	16	2.9	16	75	15	51	34	2	0	63	1.06
2025111--2025138	2	14.0	2	100	0	56	0	0	50	50	1.00
2029202--2029231	12	2.5	12	94	0	51	40	13	6	40	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2029304--2029384	27	3.1	26	81	13	87	54	0	1	44	1.08
2029307--2029384	29	2.8	28	82	9	88	53	0	1	44	1.08
2030670--2030696	4	6.8	4	100	0	54	22	0	0	77	0.76
2030799--2030829	16	1.9	16	93	0	53	32	0	0	67	0.91
2030793--2030843	22	2.3	22	82	0	57	37	0	0	62	0.95
2030835--2030866	16	2.0	16	93	0	55	40	0	0	59	0.97
2030898--2031004	6	18.0	6	72	18	73	28	0	0	71	0.93
2030893--2031040	26	5.6	25	78	16	124	29	0	1	68	1.03
2030891--2031051	11	13.8	11	73	17	105	29	1	1	67	1.06
2030889--2031058	66	2.6	65	80	11	163	30	1	1	67	1.05
2030900--2031017	40	3.0	43	78	15	89	28	0	0	70	0.93
2030889--2031044	77	2.0	83	82	12	202	30	0	1	67	1.03
2030945--2031019	18	4.9	16	74	24	72	33	0	0	66	0.92
2030986--2031070	39	2.2	39	85	6	111	32	3	2	61	1.26
2031621--2031654	13	2.6	13	90	0	50	38	0	2	58	1.13
2033718--2033760	16	2.6	16	81	3	50	11	13	2	72	1.22
2039025--2039054	14	2.1	14	100	0	60	36	26	6	30	1.82
2039976--2040011	2	18.0	2	94	0	63	0	47	2	50	1.15
2040303--2040351	3	15.7	3	87	8	71	32	0	2	65	1.04
2045686--2045728	2	21.5	2	100	0	86	51	0	0	48	1.00
2045856--2045904	17	2.9	17	87	0	71	48	4	0	46	1.20
2047675--2047699	4	6.2	4	100	0	50	24	0	0	76	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2048030--2048108	40	1.9	41	84	5	106	16	22	10	50	1.75
2050156--2050217	25	2.4	26	84	10	74	40	1	1	56	1.19
2060716--2060749	18	1.9	17	88	5	50	35	0	0	64	0.94
2060776--2060841	21	3.1	21	75	10	55	42	4	4	48	1.44
2061026--2061054	14	2.1	14	93	6	51	58	0	0	41	0.98
2062444--2062494	19	2.6	20	81	12	61	58	1	0	39	1.09
2062464--2062535	22	3.3	22	70	22	62	52	2	0	44	1.15
2062474--2062556	43	1.9	42	80	9	96	50	4	0	44	1.23
2062611--2062657	25	1.9	25	86	4	69	61	2	4	31	1.27
2063456--2063496	19	2.2	19	100	0	82	31	0	17	51	1.46
2064122--2064195	31	2.4	29	82	6	85	45	6	1	45	1.38
2065289--2065340	27	1.9	27	84	7	70	23	21	15	40	1.91
2065896--2065924	2	15.0	2	92	7	51	48	0	0	51	1.00
2066248--2066273	2	13.0	2	100	0	52	50	0	0	50	1.00
2072028--2072134	53	2.0	53	89	3	162	32	24	7	35	1.83
2072629--2072688	27	2.2	27	82	5	68	31	0	6	61	1.22
2072624--2072699	30	2.8	27	79	14	77	32	0	6	60	1.22
2072645--2072699	27	2.0	27	86	13	78	30	0	7	61	1.23
2072680--2072761	18	4.7	17	70	19	62	34	3	3	58	1.33
2074013--2074044	3	10.7	3	100	0	64	34	0	0	65	0.93
2074573--2074614	19	2.1	21	87	12	63	50	0	2	47	1.14
2075639--2075672	14	2.5	13	90	4	50	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2075639--2075677	13	2.9	14	88	3	53	58	0	0	41	0.98
2077442--2077632	95	2.0	95	98	0	373	32	23	12	31	1.92
2089097--2089159	23	2.8	22	78	7	72	44	3	0	52	1.17
2089868--2089928	23	2.7	23	78	0	68	68	1	1	27	1.08
2089873--2089920	7	6.6	7	79	9	51	68	2	2	27	1.11
2089891--2089920	15	1.9	16	93	6	53	66	3	3	26	1.23
2090136--2090264	66	1.9	68	84	3	172	51	10	1	36	1.47
2090104--2090354	74	3.6	73	75	12	195	56	9	1	33	1.40
2092732--2092766	16	2.2	16	89	0	52	45	2	51	0	1.16
2092932--2092961	3	10.0	3	100	0	60	66	0	0	33	0.92
2093090--2093145	13	4.3	13	79	6	60	37	1	0	60	1.07
2093305--2093330	7	3.7	7	100	0	52	30	0	0	69	0.89
2093321--2093358	20	2.0	20	89	5	60	63	0	0	36	0.95
2093611--2093660	22	2.3	22	83	10	59	38	0	4	58	1.17
2093686--2094016	73	4.6	72	80	8	352	32	0	11	55	1.40
2093766--2093822	26	2.2	26	84	6	71	31	1	5	61	1.28
2093768--2093870	33	3.1	33	70	5	100	27	0	9	62	1.33
2094164--2094205	21	2.0	21	85	0	57	19	28	21	30	1.97
2096767--2096816	26	1.9	26	87	0	73	48	22	8	22	1.76
2096932--2097011	14	5.8	14	70	20	53	58	1	0	40	1.06
2096920--2097001	30	2.7	32	81	14	102	54	0	0	45	0.99
2100072--2100115	19	2.2	20	92	4	72	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2100065--2100115	19	2.4	21	81	15	61	39	1	0	58	1.09
2103420--2103452	2	16.5	2	100	0	66	48	0	0	51	1.00
2105859--2105918	32	2.0	31	87	9	88	48	0	0	51	1.00
2107550--2107592	17	2.5	17	88	0	68	13	6	20	58	1.59
2112449--2112475	13	2.1	13	100	0	54	29	22	7	40	1.81
2113480--2113555	29	2.5	30	82	8	91	39	1	2	56	1.21
2115752--2115826	38	2.0	38	83	0	96	52	2	8	37	1.45
2116581--2116627	8	5.9	8	76	18	53	27	0	8	63	1.23
2116577--2116629	18	3.2	18	76	15	60	30	0	7	62	1.23
2116579--2116609	14	2.2	14	94	0	53	32	0	6	61	1.21
2116856--2116899	2	22.0	2	95	0	79	52	0	0	47	1.00
2122166--2122196	2	15.5	2	93	0	53	48	0	0	51	1.00
2122579--2122611	15	2.2	16	89	10	52	51	0	0	48	1.00
2124063--2124100	2	19.0	2	94	0	67	50	2	0	47	1.15
2124744--2124781	15	2.5	15	84	12	51	68	2	0	28	1.03
2125307--2125363	19	3.0	19	69	19	55	17	7	10	64	1.46
2129494--2129520	4	6.8	4	100	0	54	77	0	0	22	0.76
2134491--2134560	27	2.5	28	84	9	90	22	7	24	45	1.77
2135709--2135777	27	2.6	27	85	0	93	34	5	8	50	1.57
2141887--2142037	34	4.5	34	84	4	198	40	26	7	25	1.82
2141885--2142037	68	2.3	67	90	2	252	40	26	7	25	1.81
2146103--2146165	19	3.3	19	90	0	90	34	19	17	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2146471--2146619	34	4.4	34	83	4	185	40	26	6	25	1.80
2146469--2146619	68	2.2	67	89	2	239	41	27	6	25	1.80
2147179--2147228	2	25.0	2	100	0	100	50	0	50	0	1.00
2147412--2147454	3	14.3	3	95	0	77	67	2	0	30	1.03
2147604--2147656	25	2.1	26	86	6	74	50	1	0	47	1.12
2147607--2147664	25	2.4	25	82	8	66	46	5	0	48	1.24
2147758--2147868	24	4.5	24	65	12	73	54	3	1	39	1.28
2147763--2147922	74	2.1	76	86	6	218	53	2	3	41	1.30
2148507--2148547	2	20.5	2	100	0	82	51	0	0	48	1.00
2149569--2149604	2	18.5	2	94	5	65	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17