genome.fa.s320.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold320
Parameters: 2 7 7 80 10 50 1000
Length:  2598547

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  3  of  17  ( 1971 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
328499--328536	20	1.9	20	94	0	67	42	13	10	34	1.78
329333--329388	20	2.7	21	86	8	87	35	25	3	35	1.73
330263--330318	20	2.8	20	83	0	85	28	19	10	41	1.85
332664--333060	79	5.1	78	83	6	437	27	25	12	34	1.92
332700--333063	159	2.3	159	84	5	438	27	26	11	34	1.91
334160--334204	14	3.1	14	83	3	54	37	0	2	60	1.09
335060--335106	23	2.0	23	84	8	60	48	0	2	48	1.13
335473--335511	3	12.7	3	94	5	69	66	0	0	33	0.92
337185--337239	13	4.6	12	78	15	51	30	0	0	69	0.89
337246--337282	14	2.6	15	87	8	51	48	0	0	51	1.00
338119--338168	24	2.1	24	85	7	66	46	2	0	52	1.12
340449--340517	11	6.3	11	77	12	61	63	0	1	34	1.03
340434--340511	39	2.1	38	85	9	106	62	0	1	35	1.03
340495--340574	32	2.4	33	85	4	99	53	2	1	42	1.22
340558--340618	27	2.3	26	81	10	72	54	0	0	45	1.00
344449--344495	23	1.9	25	87	12	71	44	0	2	53	1.12
344448--344505	25	2.3	25	80	14	66	44	0	1	53	1.10
344856--344940	8	10.0	9	69	27	53	34	1	1	63	1.10
344871--344914	18	2.6	16	80	16	52	34	2	2	61	1.21
345010--345070	28	2.2	28	82	5	70	34	4	3	57	1.36
350492--350533	22	1.9	22	90	0	66	76	0	21	2	0.90
350489--350546	18	3.5	17	72	18	50	72	0	24	3	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
350819--350856	11	3.5	11	83	16	53	28	0	0	71	0.87
351629--351688	26	2.3	27	83	11	81	50	1	0	48	1.11
352153--352185	17	1.9	17	88	11	50	48	0	3	48	1.17
352252--352362	52	2.1	52	89	0	168	44	9	9	37	1.68
352273--352378	52	2.2	50	85	10	139	41	8	10	39	1.70
352839--352916	40	1.9	41	81	5	95	47	3	7	41	1.50
353413--353445	2	16.5	2	93	0	57	51	3	0	45	1.16
360860--360904	23	2.0	23	100	0	90	8	8	37	44	1.67
361090--361125	18	2.0	18	100	0	72	11	11	33	44	1.75
362156--362185	12	2.5	12	94	0	51	56	0	36	6	1.26
366781--366824	22	2.0	22	86	4	63	50	2	0	47	1.13
367452--367491	12	3.3	12	80	13	55	40	0	0	60	0.97
367507--367571	30	2.2	29	81	13	71	30	7	1	60	1.34
367522--367583	27	2.5	24	77	17	72	32	3	0	64	1.09
367530--367586	29	2.0	30	83	10	75	31	5	0	63	1.17
367526--367602	40	1.9	40	86	0	109	35	3	0	61	1.15
367658--367754	16	6.0	16	69	20	69	45	1	2	51	1.19
367727--367754	14	2.0	14	100	0	56	42	0	0	57	0.99
375671--375742	21	3.4	21	75	9	76	58	0	2	38	1.13
375710--375752	21	2.0	21	86	8	61	58	2	0	39	1.11
375858--375903	16	2.9	16	87	3	58	52	0	4	43	1.21
375875--375975	42	2.6	38	74	17	89	56	0	1	40	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
375896--375975	42	1.9	42	89	5	126	58	1	0	40	1.06
378809--378891	41	2.0	41	95	0	148	28	14	15	40	1.87
382401--382585	34	5.5	34	87	3	257	40	26	7	25	1.82
386651--386713	19	3.3	19	90	0	90	34	19	17	28	1.94
387021--387203	34	5.4	34	81	3	199	41	25	6	27	1.78
387415--387507	29	3.2	29	75	14	86	44	3	4	48	1.38
387560--387598	20	2.0	20	89	0	60	38	0	0	61	0.96
388781--388813	16	2.1	16	94	0	57	66	0	0	33	0.92
390299--390341	21	2.2	20	83	8	52	67	13	6	11	1.41
390738--390768	2	15.5	2	100	0	62	51	0	0	48	1.00
390939--391008	18	3.7	19	74	20	58	58	1	4	35	1.26
390961--391006	20	2.2	20	88	3	65	58	2	6	32	1.36
390973--391035	27	2.3	27	78	8	65	57	1	4	36	1.30
392992--393039	20	2.5	20	83	10	64	29	4	22	43	1.72
393393--393419	3	9.0	3	100	0	54	66	0	33	0	0.92
395707--395742	2	18.0	2	88	0	54	47	5	0	47	1.25
397610--397656	3	15.7	3	95	0	85	63	0	2	34	1.06
401526--401574	24	2.1	24	88	3	73	61	0	0	38	0.96
402076--402108	16	2.1	16	94	0	57	66	0	0	33	0.92
402124--402161	20	2.0	20	89	5	60	47	0	5	47	1.24
403011--403042	15	2.0	17	88	11	50	34	0	6	59	1.23
403280--403343	31	2.1	31	85	5	85	64	0	1	34	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
404082--404108	2	13.5	2	100	0	54	51	0	0	48	1.00
404679--404713	18	1.9	18	94	0	61	54	0	0	45	0.99
404677--404742	20	3.4	20	82	10	84	60	0	0	39	0.97
404699--404744	20	2.2	21	96	3	85	63	0	0	36	0.95
411791--412157	52	6.9	51	80	6	308	35	16	23	24	1.95
411790--412098	103	3.0	103	86	1	404	35	16	23	24	1.95
412170--412975	65	12.5	65	78	7	797	20	16	31	31	1.95
412170--412975	32	25.1	32	80	5	760	20	16	31	31	1.95
412962--413377	33	12.9	33	69	12	229	37	12	29	21	1.89
413036--413217	92	2.0	92	84	2	240	40	12	25	21	1.89
412962--413386	65	6.6	65	77	7	352	37	11	28	21	1.89
414370--414488	51	2.3	51	84	2	150	31	11	26	31	1.92
414463--414630	79	2.1	80	80	3	196	36	13	23	26	1.92
414509--414759	131	1.9	130	82	5	310	37	10	22	29	1.88
414493--414782	132	2.2	131	77	7	302	36	11	24	27	1.90
417130--417159	13	2.3	13	100	0	60	40	13	16	30	1.87
417081--417207	62	2.0	63	87	1	184	40	13	16	29	1.87
423377--423412	2	18.0	2	88	0	54	50	5	0	44	1.25
424591--424628	19	2.1	18	90	5	58	28	0	7	63	1.23
427988--428020	14	2.4	14	94	0	57	66	15	6	12	1.42
428826--428858	2	16.5	2	100	0	66	48	0	0	51	1.00
429322--429380	18	3.1	20	73	11	61	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
429365--429389	5	5.0	5	100	0	50	60	0	0	40	0.97
431384--431416	15	2.1	16	88	5	50	33	0	0	66	0.92
431391--431447	23	2.5	23	76	0	60	52	0	0	47	1.00
431394--431451	30	1.9	30	86	6	82	58	0	0	41	0.98
431887--431922	16	2.3	16	95	4	65	58	0	0	41	0.98
431900--431942	23	1.9	22	85	4	59	69	0	0	30	0.88
431930--431969	17	2.3	18	86	4	55	47	0	0	52	1.00
432012--432051	19	2.0	20	95	4	73	57	0	0	42	0.98
434658--434781	26	4.8	25	69	19	76	46	0	1	50	1.16
434693--434769	20	3.8	20	66	21	52	48	1	1	49	1.17
434713--434859	73	2.0	73	95	0	267	47	0	4	47	1.26
435002--435115	55	2.1	56	82	9	137	53	2	2	41	1.29
435620--435662	16	2.6	17	85	7	54	55	6	0	37	1.27
435679--435722	19	2.2	20	88	4	63	52	2	0	45	1.13
444350--444573	103	2.2	103	82	0	268	27	22	15	34	1.94
444357--444600	103	2.4	102	79	4	238	27	22	14	35	1.93
450093--450315	79	2.8	79	80	7	236	30	24	10	34	1.89
450234--450362	51	2.6	51	87	2	172	29	26	10	33	1.90
450382--450478	51	1.9	51	86	0	140	29	20	11	38	1.88
450466--450524	28	2.0	30	87	9	86	27	25	15	32	1.95
450153--450640	130	3.7	130	88	1	672	29	24	12	33	1.92
450494--450610	51	2.3	51	83	0	162	31	25	11	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
450597--450670	28	2.6	28	89	4	105	22	29	18	28	1.98
452641--452776	51	2.6	51	82	3	157	41	16	16	25	1.88
456813--456864	20	2.6	20	87	6	70	34	11	5	48	1.63
461239--461469	31	7.5	31	73	3	151	28	30	23	17	1.97
461393--461567	31	5.6	31	72	0	89	29	30	23	16	1.96
461272--461557	62	4.6	62	81	3	218	27	30	24	17	1.97
461595--461659	31	2.1	31	88	0	94	32	27	23	16	1.96
461725--461902	31	5.8	30	74	5	124	25	28	26	19	1.98
461714--461926	62	3.4	61	79	2	228	26	29	25	18	1.98
461900--462071	86	2.0	87	87	3	249	31	23	22	23	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17