genome.fa.s320.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold320
Parameters: 2 7 7 80 10 50 1000
Length:  2598547

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  5  of  17  ( 1971 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
655069--655095	2	13.5	2	100	0	54	51	0	48	0	1.00
659230--659262	6	5.5	6	100	0	66	51	33	15	0	1.43
659067--659406	181	1.9	181	99	0	671	19	20	36	23	1.95
659548--659586	20	2.0	19	85	5	51	23	12	41	23	1.88
659940--660048	5	21.8	5	87	0	119	49	8	21	21	1.75
659928--660048	15	8.2	15	86	5	158	48	9	21	20	1.77
660060--660160	44	2.3	43	96	3	193	48	8	17	24	1.76
660285--660321	15	2.4	16	90	4	58	13	0	8	78	0.96
664548--664615	18	3.9	18	75	7	68	38	0	0	61	0.96
668580--668661	42	2.0	42	92	0	137	37	17	8	36	1.80
668730--668768	14	2.7	14	96	4	69	38	28	0	33	1.57
669332--669382	23	2.1	25	92	7	88	56	0	5	37	1.23
669327--669385	25	2.4	26	83	16	81	57	0	5	37	1.21
670655--670694	21	1.9	21	85	10	55	52	5	0	42	1.23
676775--676865	43	2.2	40	81	16	96	50	0	0	49	1.00
678244--678273	12	2.5	12	94	0	51	63	0	3	33	1.11
680405--680480	28	2.6	29	80	18	86	47	1	0	51	1.09
680506--680534	12	2.3	13	94	5	51	51	0	0	48	1.00
681235--681271	2	19.5	2	83	10	51	54	0	0	45	1.00
681233--681271	14	2.8	14	88	11	62	56	0	0	43	0.99
681830--681855	13	2.0	13	100	0	52	69	0	0	30	0.89
682113--682146	14	2.4	14	90	0	50	58	0	2	38	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
682436--682523	16	5.6	16	78	8	99	50	0	2	47	1.13
682436--682544	33	3.4	33	80	6	109	51	0	2	44	1.22
684488--684522	18	2.0	17	88	5	52	51	0	2	45	1.16
684771--684809	21	1.9	20	84	5	51	53	0	10	35	1.35
684955--684999	22	2.1	22	88	12	67	26	2	0	71	0.98
684955--685010	22	2.3	23	82	17	60	25	1	1	71	1.05
685009--685056	24	2.0	25	91	4	80	50	2	4	43	1.33
685803--685829	2	13.5	2	100	0	54	51	0	0	48	1.00
686233--686268	2	18.0	2	100	0	72	50	0	0	50	1.00
688317--688350	2	17.0	2	93	0	59	47	0	0	52	1.00
690329--690370	21	2.0	21	86	13	61	40	0	0	59	0.97
697946--698056	53	2.0	56	86	8	158	52	2	0	44	1.21
697996--698035	21	1.9	21	85	10	55	55	0	0	45	0.99
698019--698100	23	3.3	23	75	21	76	52	2	0	45	1.14
701637--701662	3	8.7	3	100	0	52	0	30	0	69	0.89
707248--707286	20	1.9	21	85	15	55	46	0	0	53	1.00
707233--707291	32	1.9	30	89	6	91	49	0	0	50	1.00
707946--707997	3	17.3	3	95	0	95	32	1	0	65	1.04
708489--708542	26	2.0	27	82	3	65	50	0	5	44	1.25
712781--712840	24	2.5	24	81	10	61	63	1	0	35	1.05
714309--714391	5	17.8	5	68	18	54	61	0	0	38	0.96
714308--714377	14	5.1	13	73	14	52	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
714321--714386	23	2.8	25	75	11	75	60	0	0	39	0.97
714307--714392	42	2.1	41	86	6	120	61	0	0	38	0.96
716232--716263	16	2.0	16	93	0	55	46	3	0	50	1.17
717050--717099	19	2.6	19	78	6	57	58	0	4	38	1.17
717652--717689	15	2.5	16	87	8	53	42	0	0	57	0.98
717665--717725	17	3.9	15	76	23	56	42	0	1	55	1.09
717659--717727	22	2.9	24	76	24	74	43	0	1	55	1.08
719943--720004	28	2.1	30	82	8	74	66	8	11	14	1.45
720113--720139	2	13.5	2	100	0	54	48	0	0	51	1.00
720208--720264	21	2.7	21	86	2	69	61	3	0	35	1.13
721954--722005	27	2.0	25	82	17	61	30	3	1	63	1.23
723051--723098	22	2.1	24	88	7	73	50	0	0	50	1.00
723088--723206	57	2.1	57	93	0	202	38	4	2	54	1.33
723133--723178	12	3.4	14	76	14	51	36	2	0	60	1.09
723102--723204	31	3.5	31	72	12	99	37	4	2	54	1.37
723225--723286	17	3.4	17	67	16	52	38	6	6	48	1.55
724709--724750	2	22.0	2	85	9	61	47	0	0	52	1.00
724962--725077	57	2.0	57	98	0	223	42	12	17	27	1.86
725367--725417	2	25.5	2	100	0	102	50	0	0	49	1.00
725853--725888	14	2.6	14	90	0	54	52	0	0	47	1.00
729490--729551	28	2.1	30	82	8	74	66	8	11	14	1.45
730022--730066	22	2.2	21	84	11	58	64	8	0	26	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
730062--730302	125	1.9	126	80	6	283	56	7	5	30	1.51
730336--730400	10	6.2	10	74	15	60	0	23	1	75	0.89
730352--730400	11	4.6	10	78	14	53	0	20	0	79	0.73
730347--730400	5	11.2	5	80	11	51	0	22	0	77	0.76
731219--731255	18	2.1	18	89	0	56	35	2	5	56	1.36
731547--731575	3	9.7	3	100	0	58	34	0	0	65	0.93
732968--733011	22	2.1	21	84	16	56	31	4	2	61	1.28
734030--734142	7	16.0	7	67	25	53	43	1	1	53	1.21
734049--734178	56	2.4	56	85	7	169	43	3	2	50	1.30
734103--734150	15	3.5	15	73	23	52	41	0	0	58	0.98
734073--734176	31	3.6	29	73	16	90	42	3	1	51	1.31
734251--734305	13	4.4	13	71	15	53	50	0	0	49	1.00
734479--734520	21	2.0	22	85	4	59	45	2	4	47	1.36
734535--734586	26	2.0	26	81	7	61	40	1	3	53	1.30
734633--734687	27	2.1	26	83	10	67	47	0	3	49	1.19
735130--735169	20	2.0	20	85	0	53	40	2	5	52	1.37
736346--736407	15	3.9	15	75	20	63	56	0	0	43	0.99
736831--736882	27	1.9	27	81	14	63	55	0	0	44	0.99
736857--736896	20	2.0	21	85	14	57	55	0	0	45	0.99
736862--736921	29	2.1	29	81	12	70	50	0	0	50	1.00
736866--736926	16	4.1	16	72	19	53	45	0	0	54	1.00
736888--736924	18	2.0	19	85	15	51	40	0	0	59	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
748548--748580	3	11.0	3	100	0	66	33	0	0	66	0.92
748592--748649	18	3.2	17	81	16	64	65	1	0	32	1.03
752905--752945	21	2.0	20	85	4	55	43	2	2	51	1.28
753933--753966	18	1.9	17	88	5	50	58	0	0	41	0.98
755052--755081	2	15.0	2	100	0	60	50	0	0	50	1.00
755300--755350	2	25.5	2	91	0	84	47	1	0	50	1.12
758920--758946	3	9.0	3	100	0	54	66	0	0	33	0.92
759242--759313	16	4.4	16	84	8	83	37	1	5	55	1.32
759233--759313	32	2.4	33	83	6	101	38	1	4	55	1.29
759447--759481	16	2.2	16	95	5	63	31	5	11	51	1.61
759501--759561	32	1.9	32	86	0	86	34	8	6	50	1.58
759496--759546	16	3.2	16	80	2	59	33	9	7	49	1.65
759585--759631	21	2.3	20	82	13	60	57	0	2	40	1.11
760972--761001	5	6.0	5	100	0	60	20	0	0	80	0.72
767163--767187	13	1.9	13	100	0	50	64	0	4	32	1.12
767775--767837	23	2.7	22	73	9	63	36	1	0	61	1.05
767777--767840	27	2.4	25	80	12	67	32	1	0	65	1.02
767822--767859	19	2.0	19	90	10	60	28	0	0	71	0.87
767822--767858	6	6.0	6	87	6	56	29	0	0	70	0.88
769187--769226	15	2.6	16	84	8	55	45	0	0	55	0.99
769806--769870	21	2.8	24	77	20	66	50	3	0	46	1.17
770726--770775	19	2.6	20	71	6	50	40	2	2	56	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
770746--771013	142	1.9	141	80	6	319	31	2	6	58	1.39
771304--771339	12	3.0	12	84	15	56	30	0	2	66	1.06
771872--771928	18	3.0	19	71	16	55	29	0	3	66	1.08
772068--772146	35	2.3	35	84	4	97	44	2	0	53	1.14
772400--772457	24	2.3	26	82	14	77	43	3	1	51	1.28
772972--773030	28	2.1	28	84	9	75	27	5	5	62	1.37
773432--773489	26	2.3	24	81	18	73	62	3	0	34	1.12
773861--773892	3	10.7	3	93	0	55	28	0	3	68	1.04
774709--774766	13	4.2	13	74	10	53	39	0	0	60	0.97
774952--775014	24	2.6	24	75	12	67	57	0	4	38	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17