genome.fa.s320.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold320
Parameters: 2 7 7 80 10 50 1000
Length:  2598547

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  7  of  17  ( 1971 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
906249--906594	155	2.2	155	80	6	378	40	18	15	24	1.90
907992--908048	28	2.0	28	89	0	87	57	19	5	17	1.58
908415--908458	9	4.2	10	81	18	54	4	13	0	81	0.83
911149--911176	10	2.8	10	100	0	56	60	0	17	21	1.36
916122--916167	2	23.0	2	95	0	83	47	0	50	2	1.13
916947--916978	17	1.9	16	93	6	55	56	0	0	43	0.99
918513--918605	43	2.2	43	96	0	168	23	23	10	41	1.86
924530--924561	13	2.3	15	89	10	50	28	21	28	21	1.99
928963--928998	13	2.6	15	79	20	51	66	0	0	33	0.92
929017--929074	21	2.9	21	73	14	59	44	0	0	55	0.99
936011--936058	12	3.8	13	81	5	55	50	0	2	47	1.12
936011--936058	25	1.9	25	86	0	69	50	0	2	47	1.12
936248--936300	18	3.0	18	73	13	56	52	1	0	45	1.11
937174--937223	23	2.1	25	85	7	68	40	0	0	60	0.97
937820--937885	32	2.1	32	100	0	132	63	3	3	30	1.24
937883--937938	27	2.0	27	83	10	69	55	0	1	42	1.10
949826--949882	22	2.6	22	81	10	55	45	1	5	47	1.35
954451--954489	2	19.5	2	100	0	78	51	0	0	48	1.00
955233--955273	21	2.0	21	90	9	66	58	2	2	36	1.24
955233--955273	10	3.9	10	90	9	64	58	2	2	36	1.24
955747--955797	16	3.1	17	86	11	70	31	3	0	64	1.11
955757--955816	8	7.4	8	73	17	52	36	3	0	60	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
957799--957855	25	2.2	25	79	11	62	31	0	1	66	1.02
957797--957863	34	2.0	34	85	11	93	32	0	1	65	1.02
963532--963656	64	2.0	64	96	0	232	48	9	7	34	1.63
965798--965838	16	2.5	17	80	11	50	65	2	4	26	1.25
966165--966193	9	3.3	9	95	4	51	93	0	6	0	0.36
966164--966193	15	1.9	15	93	6	51	90	0	10	0	0.47
966289--966323	18	1.9	18	88	11	54	40	0	0	60	0.97
966431--966506	23	3.2	23	69	10	64	53	0	1	44	1.08
966428--966540	47	2.4	48	85	8	144	54	0	0	44	1.06
966538--966601	24	2.8	21	76	21	58	54	0	0	45	0.99
966494--966645	38	4.2	37	72	14	104	57	0	0	42	1.03
966568--966616	17	2.9	17	79	8	57	57	2	0	40	1.10
976245--976269	12	2.1	12	100	0	50	28	8	8	56	1.57
976739--976778	2	20.0	2	84	0	53	42	0	7	50	1.30
976739--976788	18	2.8	18	84	0	55	36	0	14	50	1.43
977933--977972	13	2.8	15	85	11	57	55	0	0	45	0.99
978715--978764	24	2.1	24	92	0	82	16	8	8	68	1.38
979380--979404	2	12.5	2	100	0	50	48	0	0	52	1.00
979921--979982	31	2.1	31	82	11	78	46	6	1	45	1.38
980354--980491	61	2.3	62	81	5	156	57	13	0	27	1.41
980442--980607	88	1.9	89	82	1	208	53	15	4	27	1.61
980540--980658	61	2.0	61	83	3	150	55	15	4	25	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
983388--983436	26	2.0	24	84	8	62	48	0	0	51	1.00
983388--983465	25	3.2	25	74	17	65	53	0	0	46	1.00
990921--990973	29	1.9	26	81	11	61	64	16	15	3	1.44
992935--993000	21	3.0	21	71	24	57	51	0	1	46	1.10
993077--993312	123	1.9	123	87	5	343	36	9	12	41	1.76
994105--994155	16	3.1	16	88	2	75	76	1	21	0	0.88
994105--994156	17	3.1	16	81	15	61	76	1	21	0	0.87
997434--997477	23	2.0	22	81	4	52	22	0	6	70	1.11
1002451--1002512	33	1.9	32	83	9	81	45	12	11	30	1.78
1006212--1006276	32	2.1	31	88	2	94	36	20	4	38	1.73
1007831--1007873	16	2.6	17	78	10	54	34	2	2	60	1.22
1009171--1009207	18	2.1	18	94	0	65	35	5	2	56	1.36
1012059--1012085	6	4.5	6	100	0	54	51	0	33	14	1.43
1017488--1017519	2	16.0	2	100	0	64	50	0	0	50	1.00
1018746--1018774	15	1.9	15	100	0	58	51	0	0	48	1.00
1018825--1018894	32	2.2	31	85	10	88	48	2	1	47	1.25
1020414--1020440	2	13.5	2	100	0	54	51	0	0	48	1.00
1024789--1024824	16	2.2	16	95	0	63	52	2	0	44	1.15
1025659--1025693	15	2.2	17	90	10	56	77	0	17	5	0.96
1027097--1027127	16	1.9	16	93	0	53	58	0	0	41	0.98
1028254--1028296	20	2.0	23	86	13	65	37	2	0	60	1.10
1028273--1028330	29	2.0	28	83	3	71	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1028681--1028728	17	2.7	18	87	6	62	52	0	4	43	1.20
1028736--1028787	18	2.9	18	83	8	54	59	0	1	38	1.08
1028745--1028814	27	2.7	26	77	8	70	58	0	1	40	1.07
1028772--1028814	19	2.2	19	87	8	59	58	0	2	39	1.11
1028819--1028846	2	14.0	2	100	0	56	50	0	0	50	1.00
1029065--1029115	18	2.7	18	74	17	50	39	0	1	58	1.09
1034745--1034800	26	2.2	26	96	0	103	33	8	16	41	1.79
1038355--1038429	20	3.8	19	78	7	87	41	12	13	33	1.81
1038352--1038429	40	2.0	39	89	2	120	41	12	12	33	1.82
1038986--1040101	29	38.3	29	85	6	1413	21	17	32	29	1.96
1041331--1041384	1	54.0	1	77	0	54	0	1	9	88	0.58
1041331--1041383	9	5.9	9	82	13	65	0	1	9	88	0.58
1041320--1041384	9	6.4	10	81	15	64	1	3	9	86	0.75
1041331--1041384	16	3.6	15	82	7	65	0	1	9	88	0.58
1041320--1041384	10	6.3	10	83	16	64	1	3	9	86	0.75
1055386--1055463	40	2.0	39	87	2	111	41	14	12	32	1.83
1055389--1055463	20	3.8	20	78	3	71	41	13	13	32	1.83
1058228--1058283	28	1.9	28	89	7	85	35	19	23	21	1.96
1058165--1058365	78	2.6	79	80	2	217	29	16	27	25	1.97
1058317--1058393	28	2.8	28	88	4	102	23	18	33	24	1.96
1058412--1058554	52	2.7	52	79	6	137	34	11	23	29	1.91
1058382--1058562	52	3.4	51	72	12	134	35	11	22	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1058583--1058657	27	2.8	26	86	12	98	24	20	32	24	1.98
1058642--1058763	51	2.4	51	86	8	158	31	12	22	33	1.91
1061124--1061149	13	2.0	13	100	0	52	38	15	15	30	1.88
1061103--1061169	33	2.0	33	88	0	98	43	16	14	25	1.86
1061189--1061256	19	3.9	18	76	23	83	38	14	11	35	1.83
1061211--1061235	13	1.9	13	100	0	50	32	16	16	36	1.90
1061192--1061254	32	2.0	32	96	0	117	36	15	12	34	1.86
1061312--1061368	21	2.7	22	91	8	100	36	21	10	31	1.87
1068921--1068990	20	3.4	20	79	14	79	32	17	11	38	1.85
1071899--1071948	22	2.3	23	89	6	77	36	44	8	12	1.71
1072423--1072462	21	1.9	21	90	10	64	40	0	0	60	0.97
1074304--1074377	7	10.4	7	72	12	53	39	0	4	56	1.18
1075525--1075555	2	15.5	2	100	0	62	48	0	0	51	1.00
1076191--1076252	33	1.9	34	87	9	94	61	1	4	32	1.27
1076251--1076329	32	2.5	32	89	0	122	48	3	5	43	1.43
1076339--1076388	20	2.5	20	96	0	91	54	6	0	40	1.25
1077350--1077386	2	18.5	2	94	0	65	48	0	2	48	1.15
1078573--1078698	23	5.0	25	66	17	66	53	1	0	44	1.15
1078586--1078649	20	3.2	20	77	16	69	51	3	0	45	1.17
1078623--1078689	34	2.0	32	86	11	91	52	1	0	46	1.09
1078590--1078686	18	5.1	18	73	17	72	53	2	0	44	1.12
1078603--1078740	18	7.9	18	67	16	58	53	2	0	43	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1078928--1078960	15	2.1	16	88	5	50	27	0	0	72	0.85
1080095--1080143	20	2.5	20	83	6	57	44	6	2	46	1.39
1081583--1081634	16	3.2	17	75	10	54	50	0	0	50	1.00
1081699--1081751	23	2.3	23	77	3	54	56	0	0	43	0.99
1085882--1085951	20	3.6	20	84	7	99	38	10	17	34	1.83
1093283--1093324	11	3.7	11	90	6	66	88	9	2	0	0.61
1093291--1093325	12	3.0	12	95	4	63	85	14	0	0	0.59
1094339--1094991	28	23.6	27	90	4	991	22	34	14	28	1.94
1094968--1095883	32	29.8	28	82	10	392	29	31	18	20	1.96
1094987--1095883	282	3.2	282	90	3	1344	29	31	18	20	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17