genome.fa.s320.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold320
Parameters: 2 7 7 80 10 50 1000
Length:  2598547

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  17  of  17  ( 1971 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2504709--2504762	16	3.4	16	75	10	56	46	0	0	53	1.00
2508246--2508290	22	2.0	22	87	8	65	42	6	0	51	1.28
2508547--2508578	2	17.0	2	87	12	50	50	0	0	50	1.00
2516382--2516443	31	1.9	33	87	6	92	50	0	4	45	1.23
2516722--2516807	39	2.2	39	81	12	95	53	3	0	43	1.18
2518317--2518498	95	1.9	95	93	0	310	38	17	19	24	1.93
2523959--2524024	34	1.9	33	85	11	89	37	0	4	57	1.19
2527231--2527255	3	8.3	3	100	0	50	0	32	0	68	0.90
2528195--2528231	18	2.2	16	90	9	56	54	0	5	40	1.24
2529277--2529342	26	2.6	26	85	2	89	33	4	0	62	1.16
2531094--2531138	22	2.0	22	82	0	54	48	0	2	48	1.13
2531715--2531777	26	2.5	26	80	12	69	47	0	1	50	1.10
2532873--2532898	2	13.0	2	100	0	52	50	0	0	50	1.00
2534073--2534111	20	2.0	20	89	0	60	33	20	10	35	1.86
2534285--2534332	20	2.3	21	82	7	62	20	0	6	72	1.05
2534937--2534982	24	1.9	24	90	0	74	21	6	28	43	1.77
2535726--2536284	108	5.1	108	78	5	500	37	14	13	34	1.86
2537978--2538013	15	2.3	16	90	4	56	27	2	11	58	1.46
2540458--2540615	51	3.1	51	82	3	192	25	32	22	19	1.97
2541557--2541628	16	4.7	16	77	6	78	54	2	4	38	1.34
2541571--2541630	30	1.9	32	86	6	88	51	1	6	40	1.38
2541979--2542090	56	2.0	56	100	0	224	32	8	19	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2543158--2543250	4	22.8	4	79	16	70	0	26	0	73	0.84
2543163--2543252	35	2.6	35	83	14	109	0	27	0	72	0.85
2544409--2544440	13	2.4	14	85	15	50	37	0	0	62	0.95
2545777--2545833	23	2.6	23	75	5	55	38	1	5	54	1.33
2545792--2545829	15	2.5	15	84	12	51	39	2	5	52	1.38
2547644--2547859	51	4.3	50	84	5	249	25	32	25	15	1.95
2547644--2547859	99	2.1	99	83	4	263	25	32	25	15	1.95
2549103--2549136	2	17.0	2	100	0	68	50	0	0	50	1.00
2549230--2550069	181	4.7	179	80	5	826	43	13	7	36	1.71
2550356--2550399	19	2.3	19	84	7	54	52	11	0	36	1.38
2552078--2552118	3	13.7	3	94	0	73	34	2	0	63	1.08
2552486--2552526	2	20.5	2	89	0	64	51	4	0	43	1.23
2554338--2554374	5	7.2	5	87	6	56	43	0	0	56	0.99
2556987--2557048	31	1.9	33	87	6	92	48	0	1	50	1.10
2557033--2557083	21	2.4	21	81	18	61	50	1	0	47	1.12
2569792--2569828	18	2.0	20	89	10	60	43	2	0	54	1.14
2570110--2570148	19	2.0	19	85	5	51	61	0	0	38	0.96
2574600--2574645	19	2.4	18	85	10	56	32	0	4	63	1.14
2574780--2574828	25	2.0	25	88	4	73	59	4	0	36	1.17
2578982--2579030	2	24.5	2	100	0	98	51	0	0	48	1.00
2581267--2581596	164	2.0	164	98	0	633	38	9	23	29	1.86
2582498--2582555	20	2.9	21	89	5	93	44	10	13	31	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2582450--2582605	71	2.2	71	88	2	224	45	10	14	29	1.78
2582518--2582616	51	1.9	51	89	0	153	48	11	14	26	1.76
2585193--2585238	11	4.2	11	82	0	56	34	0	2	63	1.07
2585193--2585301	22	4.9	22	67	14	62	39	2	2	55	1.29
2591845--2591876	2	16.5	2	93	6	57	50	0	0	50	1.00
2594292--2594331	3	13.3	3	94	0	71	65	2	0	32	1.06
2598130--2598196	19	3.6	19	83	15	79	49	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17

The End!