Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold40
Parameters: 2 7 7 80 10 50 1000
Length:  3440810

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  24  of  24  ( 2833 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3297677--3297718
21
1.9
22
85
9
59
38
0
0
61
0.96
3302852--3302921
30
2.3
30
100
0
140
22
8
50
18
1.74
3308670--3308708
2
19.5
2
100
0
78
51
48
0
0
1.00
3313108--3313158
15
3.3
16
81
8
61
56
0
0
43
0.99
3313108--3313152
14
3.1
14
87
9
63
55
0
0
44
0.99
3322651--3322684
3
11.0
3
93
6
59
67
0
0
32
0.91
3323076--3323117
17
2.4
18
84
11
52
47
2
2
47
1.28
3323971--3324037
18
3.9
17
80
14
68
41
0
0
58
0.98
3323994--3324037
17
2.6
16
82
10
61
38
0
0
61
0.96
3324597--3324639
18
2.3
18
77
18
52
48
0
0
51
1.00
3324628--3324677
14
3.5
15
75
8
50
36
2
2
60
1.20
3324798--3324837
14
2.9
13
85
3
53
50
5
0
45
1.23
3333558--3333604
2
23.5
2
100
0
94
51
0
0
48
1.00
3334716--3334742
13
2.1
13
100
0
54
37
0
0
62
0.95
3334711--3334762
15
3.5
15
79
10
54
36
0
1
61
1.07
3335262--3335312
11
4.4
12
75
9
52
37
0
0
62
0.95
3335270--3335323
22
2.4
23
84
9
76
38
0
0
61
0.96
3335382--3335412
16
1.9
16
93
0
53
48
9
0
41
1.36
3335851--3335883
2
17.0
2
93
6
59
48
0
0
51
1.00
3337577--3337604
2
14.0
2
100
0
56
50
0
0
50
1.00
3338628--3338667
3
13.3
3
100
0
80
35
0
0
65
0.93
3339269--3339329
29
2.1
29
90
0
95
42
16
1
39
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3339615--3339654
2
20.0
2
100
0
80
50
0
0
50
1.00
3339711--3339754
23
1.9
23
81
9
54
50
2
4
43
1.35
3340962--3341029
2
36.0
2
76
16
56
44
1
4
50
1.31
3342422--3342477
26
2.2
26
93
0
94
23
3
25
48
1.67
3343378--3343407
2
15.0
2
100
0
60
50
0
0
50
1.00
3344197--3344237
20
2.0
20
85
0
55
29
2
0
68
1.03
3344705--3344742
13
2.8
14
80
8
51
60
0
0
39
0.97
3344705--3344761
27
2.1
27
84
9
73
56
0
0
43
0.99
3354347--3354397
26
1.9
27
92
4
86
43
1
0
54
1.11
3355068--3355109
21
2.0
22
90
4
68
23
0
0
76
0.79
3355068--3355100
15
2.1
16
94
5
59
21
0
0
78
0.75
3355097--3355225
30
4.2
30
72
15
86
44
0
0
55
0.99
3355091--3355215
34
3.8
32
77
11
103
43
0
0
56
0.99
3358061--3358090
2
15.0
2
100
0
60
50
0
0
50
1.00
3360278--3360317
19
2.2
18
86
4
53
52
0
0
47
1.00
3360294--3360337
21
2.0
22
86
4
63
47
0
0
52
1.00
3365502--3365539
15
2.5
15
87
8
51
36
0
2
60
1.11
3365677--3365750
36
2.1
34
82
9
87
54
5
0
40
1.24
3366753--3366826
19
3.7
19
73
19
62
50
0
1
48
1.09
3367400--3367424
13
1.9
13
100
0
50
64
16
20
0
1.30
3368447--3368544
48
2.0
48
96
0
178
19
19
25
35
1.95
3370429--3370509
32
2.5
33
90
8
121
44
0
0
55
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3372977--3373086
32
3.1
34
80
14
98
54
5
1
38
1.34
3373260--3373316
27
2.0
29
86
10
82
0
29
0
70
0.88
3373692--3373749
26
2.3
26
85
8
75
56
0
1
41
1.09
3377953--3377993
21
2.0
20
85
4
55
39
0
4
56
1.21
3377957--3377999
21
2.0
21
81
0
50
39
0
6
53
1.28
3381666--3381711
13
3.7
13
81
16
53
52
0
0
47
1.00
3383197--3383234
13
2.6
16
84
16
55
42
0
0
57
0.98
3385659--3385683
2
12.5
2
100
0
50
48
0
52
0
1.00
3386925--3386954
14
2.1
14
93
0
51
46
0
6
46
1.29
3388528--3388564
3
12.3
3
94
0
65
35
2
0
62
1.10
3388942--3388991
17
3.1
15
78
16
55
24
0
0
76
0.80
3388942--3388991
16
3.1
16
80
5
64
24
0
0
76
0.80
3393473--3393502
2
15.0
2
100
0
60
50
0
0
50
1.00
3396887--3396956
31
2.3
31
92
0
122
22
11
27
38
1.89
3397924--3397960
19
1.9
19
94
0
65
32
13
8
45
1.73
3420773--3420814
22
1.9
22
85
0
57
45
0
2
52
1.13
3421234--3421284
24
2.1
24
100
0
102
56
0
7
35
1.28
3423331--3423379
24
2.0
25
88
11
75
38
6
0
55
1.25
3423879--3423919
20
2.1
20
90
4
66
60
9
17
12
1.57
3434949--3434996
16
2.9
17
77
20
57
47
0
2
50
1.12
3434949--3434998
17
3.1
17
73
26
54
48
0
2
50
1.12
3434953--3435004
15
3.3
15
75
17
52
48
0
1
50
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3436203--3436237
16
2.1
17
89
5
54
54
2
0
42
1.15
3436408--3436438
3
10.3
3
100
0
62
32
0
0
67
0.91
3436956--3437010
11
5.4
11
79
14
64
32
1
0
65
1.03
3436909--3436988
34
2.4
34
72
8
81
36
0
0
63
0.94
3436928--3437010
28
2.8
30
83
10
109
34
1
0
63
1.02
3436990--3437041
24
2.2
24
82
6
61
48
1
0
50
1.12
3440373--3440417
14
3.1
14
84
12
56
71
0
2
26
0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24

The End!