genome.fa.s400.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold400
Parameters: 2 7 7 80 10 50 1000
Length:  2847997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  17  of  17  ( 1977 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2789724--2789838	48	2.5	46	86	2	149	26	20	13	40	1.88
2789740--2789838	46	2.1	48	88	3	148	26	19	12	42	1.86
2790046--2790191	42	3.5	42	76	3	150	18	30	17	32	1.94
2790002--2790216	84	2.5	84	87	0	295	20	30	16	33	1.95
2790180--2790443	43	6.2	43	76	7	207	23	30	15	30	1.96
2790180--2790381	85	2.4	86	78	4	203	25	29	14	30	1.95
2791573--2791941	163	2.2	164	81	5	406	28	11	9	50	1.70
2793086--2793200	51	2.3	51	89	3	169	30	12	26	31	1.92
2793136--2793363	107	2.1	108	83	5	284	32	14	25	28	1.95
2793298--2793363	28	2.4	28	87	5	89	28	21	27	22	1.99
2795561--2795671	20	5.6	19	86	8	141	41	14	16	27	1.87
2795561--2795671	40	2.8	39	90	5	161	41	14	16	27	1.87
2796454--2796498	19	2.4	18	82	17	56	75	0	17	6	1.01
2797581--2797711	55	2.4	55	90	0	208	21	23	26	28	1.99
2797391--2797866	149	3.1	150	85	5	593	27	19	28	25	1.99
2797636--2798015	94	3.8	94	76	15	375	25	20	28	26	1.99
2797571--2798070	210	2.4	209	90	2	776	25	20	28	26	1.99
2797732--2797921	55	3.3	55	86	5	238	24	20	26	28	1.99
2797795--2798172	149	2.5	149	89	3	560	24	20	29	26	1.99
2797951--2798070	55	2.2	55	95	0	213	21	20	29	29	1.98
2797416--2798179	359	2.1	361	89	3	1162	26	19	28	25	1.98
2799152--2799210	9	6.9	9	86	13	81	0	1	10	88	0.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2799151--2799211	1	61.0	1	76	0	59	0	1	9	88	0.58
2799165--2799209	23	2.0	23	100	0	90	0	0	11	88	0.50
2803247--2803306	21	2.9	21	97	2	113	35	15	13	36	1.86
2810365--2810432	13	5.5	12	77	19	61	79	19	1	0	0.81
2810354--2810418	29	2.2	29	86	5	87	80	18	1	0	0.80
2810363--2810437	39	1.9	40	84	13	102	81	17	1	0	0.76
2811716--2811803	31	2.9	30	83	6	106	23	32	18	25	1.97
2811722--2811805	30	2.8	30	83	7	107	25	33	19	22	1.97
2811804--2812211	33	12.8	33	84	5	375	19	27	13	38	1.90
2811784--2811980	33	6.8	27	78	9	119	21	28	14	34	1.93
2811783--2812211	149	2.8	148	81	8	448	20	28	14	37	1.91
2812366--2812747	49	7.8	49	75	10	316	24	26	17	31	1.97
2812467--2812822	52	6.9	51	79	5	317	24	26	16	32	1.96
2812467--2812747	101	2.8	101	90	0	427	23	26	18	32	1.97
2815514--2816305	419	1.9	419	94	1	1408	28	24	13	32	1.94
2823537--2823563	4	6.8	4	100	0	54	77	0	0	22	0.76
2825655--2825819	51	3.2	51	84	3	206	28	12	29	29	1.93
2825802--2825875	28	2.6	29	79	12	91	24	22	31	21	1.99
2825785--2825995	107	2.0	107	87	3	309	33	16	24	26	1.95
2825911--2825982	28	2.6	27	82	14	85	30	20	26	22	1.98
2827074--2827121	20	2.4	20	92	0	78	37	20	18	22	1.94
2828298--2828352	20	2.8	20	85	0	74	45	10	10	32	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2828367--2828395	12	2.3	13	94	5	51	41	10	17	31	1.83
2828378--2828433	20	2.8	20	89	2	87	44	12	16	26	1.83
2828623--2828649	13	2.1	13	100	0	54	29	44	18	7	1.77
2829058--2829164	53	2.0	53	96	0	196	39	24	13	23	1.90
2829247--2829323	31	2.5	32	83	6	88	72	1	19	6	1.13
2829728--2829789	31	2.0	31	100	0	124	22	16	22	38	1.92
2834106--2834132	13	2.1	13	100	0	54	29	14	14	40	1.86
2834087--2834151	33	2.0	32	87	3	94	30	15	13	40	1.86
2834116--2834192	20	3.9	20	87	1	111	35	15	16	32	1.91
2834237--2834267	13	2.4	13	94	0	53	35	16	12	35	1.87
2839183--2844507	475	11.3	474	80	7	5581	35	12	19	31	1.90
2842037--2844104	158	13.0	154	65	16	400	36	12	19	30	1.89
2847728--2847990	142	1.8	142	97	2	501	40	6	23	29	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17

The End!