genome.fa.s41.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold41
Parameters: 2 7 7 80 10 50 1000
Length:  2798036

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  21  of  21  ( 2447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2755596--2755962	30	11.8	29	75	13	178	22	27	14	35	1.93
2755593--2755996	188	2.2	186	81	7	451	22	27	14	35	1.93
2755593--2755996	62	6.4	62	78	9	322	22	27	14	35	1.93
2755941--2756028	34	2.7	33	87	5	124	17	30	13	38	1.88
2756025--2757689	48	35.9	48	73	13	1253	25	25	19	29	1.98
2756119--2756283	39	4.0	38	72	16	132	27	25	20	26	1.99
2756025--2756332	87	3.5	86	89	4	418	25	25	20	29	1.99
2756394--2756834	87	5.0	87	89	1	621	25	24	20	29	1.99
2756550--2756785	39	5.6	38	72	17	166	26	25	20	27	1.99
2756394--2757690	174	7.0	175	78	11	1181	25	25	19	30	1.98
2756025--2757030	415	2.4	408	86	5	1348	25	25	19	29	1.98
2756025--2757030	502	2.0	503	94	1	1746	25	25	19	29	1.98
2757044--2757386	87	3.9	87	91	0	535	25	25	20	28	1.99
2757308--2757738	52	8.5	50	80	5	404	24	25	17	32	1.97
2757308--2757689	101	3.8	101	85	5	508	24	26	18	31	1.97
2757554--2757784	53	4.5	53	82	5	197	25	25	16	32	1.96
2757300--2757784	101	4.8	101	83	5	351	25	25	17	31	1.97
2766381--2766406	13	2.0	13	100	0	52	76	0	7	15	0.99
2766465--2766532	19	3.9	19	78	21	85	35	11	14	38	1.83
2766486--2766510	13	1.9	13	100	0	50	36	16	16	32	1.90
2766467--2766529	32	2.0	32	96	0	117	34	12	15	36	1.86
2766572--2766597	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2766552--2766618	33	2.0	33	88	0	98	25	14	16	43	1.86
2769065--2769141	28	2.8	28	87	0	100	23	33	19	23	1.97
2769016--2769220	107	1.9	107	81	5	243	26	28	15	28	1.96
2769095--2769299	79	2.6	79	80	3	216	24	30	16	28	1.96
2781700--2781752	12	4.3	12	85	9	72	88	7	3	0	0.61
2781699--2781779	19	4.5	17	76	11	65	85	6	8	0	0.75
2781699--2781759	23	2.6	24	84	2	79	86	8	4	0	0.69
2781699--2781779	27	3.0	27	75	12	85	85	6	8	0	0.75
2781699--2781762	1	64.0	1	76	0	56	87	7	4	0	0.66
2782789--2784124	55	24.3	55	91	4	2058	28	30	20	20	1.97
2783052--2783747	28	25.3	26	60	17	85	29	31	19	20	1.97
2784556--2784584	11	2.6	11	100	0	58	93	6	0	0	0.36
2784587--2784647	21	3.0	20	81	6	79	37	16	13	32	1.87
2784587--2784647	20	3.1	19	79	11	77	37	16	13	32	1.87
2784683--2784750	19	3.9	19	78	21	85	35	11	14	38	1.83
2784685--2784747	32	2.0	32	96	0	117	34	12	15	36	1.86
2784704--2784728	13	1.9	13	100	0	50	36	16	16	32	1.90
2784790--2784815	13	2.0	13	100	0	52	30	15	15	38	1.88
2784770--2784836	33	2.0	33	88	0	98	25	14	16	43	1.86
2787200--2787332	52	2.6	52	79	5	144	30	26	11	32	1.91
2787316--2787392	28	2.8	28	87	0	100	23	33	19	23	1.97
2797533--2797632	28	3.6	28	84	9	125	27	20	31	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2797620--2797842	52	4.3	52	81	5	227	32	12	25	29	1.92
2797825--2797897	27	2.6	28	86	2	94	23	21	31	23	1.98
2797884--2798016	51	2.5	52	79	8	142	33	9	23	33	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21

The End!