genome.fa.s414.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold414
Parameters: 2 7 7 80 10 50 1000
Length:  2018024

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  10  of  13  ( 1553 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1510069--1510093	13	1.9	13	100	0	50	36	16	16	32	1.90
1510951--1511013	25	2.7	23	79	13	76	28	28	1	41	1.65
1512976--1513012	13	2.8	13	91	0	56	35	16	16	32	1.91
1517954--1518028	20	3.8	20	78	7	89	40	12	13	34	1.81
1517904--1518078	90	1.9	91	88	1	262	42	11	14	30	1.81
1524238--1524365	51	2.5	52	94	1	222	29	17	17	35	1.92
1524238--1524385	51	2.9	50	89	5	208	31	16	17	34	1.93
1524374--1524398	13	1.9	13	100	0	50	36	16	16	32	1.90
1524441--1524538	19	5.8	18	71	28	90	36	17	12	33	1.87
1524436--1524536	32	3.1	32	97	1	184	35	17	11	34	1.87
1524460--1524516	13	3.9	13	76	24	60	33	17	14	35	1.90
1525329--1525455	67	1.9	68	86	1	184	38	12	25	23	1.90
1525405--1526008	43	12.7	52	76	14	385	32	17	25	25	1.97
1525512--1526019	43	11.1	43	79	12	550	31	17	25	25	1.97
1525459--1526019	92	6.1	92	94	1	953	31	17	25	25	1.97
1526007--1526378	33	11.5	32	91	4	590	18	18	35	27	1.94
1526007--1526380	65	5.8	66	93	4	622	18	17	35	28	1.94
1526007--1526378	131	2.9	129	92	5	619	18	18	35	27	1.94
1526422--1527121	31	21.7	31	75	14	503	30	14	34	20	1.92
1526395--1527096	100	7.2	100	83	7	797	31	13	34	20	1.92
1526422--1527121	65	10.9	65	75	15	416	30	14	34	20	1.92
1527226--1527271	8	5.6	8	92	5	65	26	6	23	43	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1528088--1528148	1	61.0	1	73	0	50	0	4	8	86	0.69
1528088--1528149	16	4.0	15	79	10	63	0	4	9	85	0.73
1528088--1528147	21	2.8	21	85	7	77	0	5	8	86	0.69
1528088--1528145	29	2.0	29	89	3	89	0	5	8	86	0.71
1529919--1530229	79	3.9	79	80	7	319	33	14	25	27	1.94
1529929--1530228	158	1.9	159	84	8	405	33	13	24	28	1.93
1530164--1530280	51	2.3	51	84	7	148	31	10	24	33	1.89
1530263--1530338	28	2.8	27	80	13	93	31	22	26	19	1.98
1530372--1530473	28	3.6	28	69	7	91	31	20	26	21	1.98
1530464--1530577	51	2.2	51	81	3	140	35	13	23	28	1.92
1532885--1532954	20	3.5	20	76	7	70	44	12	12	30	1.80
1533902--1534036	61	2.2	61	84	2	173	27	21	26	24	1.99
1533940--1534097	61	2.6	60	81	7	167	27	21	24	26	1.99
1534062--1534251	55	3.3	55	85	9	254	23	22	27	26	1.99
1534170--1534254	28	3.0	28	62	6	73	28	21	24	25	1.99
1534177--1534348	94	1.8	95	93	1	301	25	20	28	26	1.99
1534272--1534748	55	8.5	55	83	6	578	25	20	26	27	1.99
1533887--1535555	437	3.8	427	77	12	1399	26	20	27	26	1.99
1534272--1535672	171	8.5	169	80	9	1357	25	20	26	26	1.99
1533872--1535581	492	3.5	492	89	2	2495	26	20	27	26	1.99
1534762--1535235	55	8.4	55	83	6	527	25	21	26	27	1.99
1535159--1535332	94	1.8	95	95	1	314	25	21	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1535254--1535675	55	7.4	55	81	7	468	24	21	26	27	1.99
1535254--1535672	116	3.7	112	82	7	499	24	21	26	28	1.99
1534820--1535746	437	2.1	436	91	0	1494	25	20	27	26	1.99
1536753--1536808	22	2.6	21	77	5	58	5	7	7	80	1.02
1546093--1546221	52	2.5	52	93	0	222	29	17	17	35	1.93
1546093--1546241	52	2.9	52	89	2	192	30	17	17	34	1.93
1546230--1546254	13	1.9	13	100	0	50	36	16	16	32	1.90
1546307--1546487	19	10.9	17	73	26	142	36	17	12	33	1.87
1546299--1546465	32	5.2	32	97	0	316	35	17	12	33	1.88
1552947--1553258	79	3.9	79	79	5	308	33	14	24	26	1.94
1552958--1553258	158	1.9	159	82	6	385	33	14	23	27	1.94
1553193--1553308	51	2.3	51	89	0	169	31	12	25	31	1.92
1553291--1553366	28	2.8	28	82	11	95	27	22	30	19	1.98
1553276--1553485	110	1.9	110	90	1	332	33	16	24	25	1.95
1553403--1553474	28	2.6	28	93	0	117	26	20	30	22	1.98
1553459--1553576	52	2.3	51	81	8	132	31	11	26	30	1.92
1555898--1555967	33	2.1	33	100	0	140	40	11	18	30	1.86
1555878--1555984	53	2.0	53	83	7	137	40	11	17	30	1.85
1555917--1555947	13	2.4	13	94	0	53	38	12	16	32	1.86
1555897--1555984	20	4.8	20	72	21	75	42	12	17	28	1.85
1556000--1556029	13	2.3	13	100	0	60	40	13	16	30	1.87
1558088--1558134	21	2.2	21	81	11	51	36	12	4	46	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1559680--1559709	2	15.0	2	100	0	60	50	0	0	50	1.00
1562566--1562627	14	4.4	14	75	8	63	40	0	0	59	0.97
1562549--1562627	28	2.7	29	75	15	81	45	0	0	54	0.99
1563083--1563120	16	2.4	16	87	12	60	76	0	0	23	0.79
1563149--1563249	5	20.6	5	71	15	77	57	0	0	41	1.05
1563147--1563246	16	6.3	16	70	20	68	56	1	0	43	1.06
1563213--1563257	15	3.5	13	85	14	58	66	0	0	33	0.92
1564632--1564658	2	13.5	2	100	0	54	48	0	0	51	1.00
1565842--1566052	108	2.0	107	91	3	343	33	6	4	56	1.44
1567880--1567922	17	2.5	17	84	0	59	34	2	0	62	1.08
1568248--1568277	4	7.5	4	100	0	60	50	26	23	0	1.50
1568298--1568322	2	12.5	2	100	0	50	0	52	0	48	1.00
1572170--1572217	25	1.9	25	83	8	62	43	2	0	54	1.12
1572697--1572770	32	2.3	32	77	9	78	39	2	2	55	1.28
1573166--1573446	93	3.0	92	91	2	436	45	16	10	27	1.80
1579269--1579308	20	2.0	20	85	5	53	62	12	5	20	1.48
1591903--1591999	31	3.1	31	93	0	167	31	4	3	60	1.31
1591925--1591975	14	3.4	14	75	15	57	27	3	3	64	1.28
1593680--1593718	16	2.4	16	82	0	51	35	0	2	61	1.10
1594286--1594330	2	23.0	2	95	4	83	48	0	0	51	1.00
1595210--1595249	2	20.5	2	94	5	73	50	0	0	50	1.00
1598998--1599043	19	2.4	19	92	0	74	26	21	15	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1603177--1603305	52	2.5	52	92	0	213	31	16	16	36	1.91
1603177--1603325	52	2.9	51	87	4	201	32	16	16	34	1.91
1603311--1603338	13	2.2	13	100	0	56	39	17	14	28	1.89
1603379--1603445	33	2.0	33	88	0	98	40	13	11	34	1.81
1603401--1603425	13	1.9	13	100	0	50	32	16	16	36	1.90
1604396--1604431	18	2.0	18	89	10	56	11	27	0	61	1.30
1609184--1609227	21	2.0	21	86	4	61	36	13	11	38	1.81
1609270--1609311	21	2.0	21	95	0	75	45	9	16	28	1.79
1609298--1609323	13	2.0	13	100	0	52	30	15	15	38	1.88
1611707--1612086	51	7.3	51	69	11	180	30	26	11	31	1.91
1611866--1612086	51	4.3	51	83	2	246	31	25	10	32	1.90
1611702--1612194	262	1.9	262	94	0	878	29	26	12	31	1.92
1612103--1612301	79	2.5	78	82	2	236	25	27	15	31	1.96
1613503--1613675	53	3.4	49	77	7	166	24	24	16	34	1.95
1614371--1614434	19	3.7	19	76	23	86	32	12	18	35	1.89
1614372--1614447	32	2.4	32	100	0	152	34	13	18	34	1.89
1614391--1614448	13	4.0	13	76	23	62	36	13	17	32	1.89
1614483--1614611	19	7.8	18	71	28	117	33	12	17	36	1.88
1614321--1614560	113	2.1	113	100	0	480	35	15	17	32	1.91
1614485--1614619	32	4.2	32	99	0	261	33	12	18	35	1.89
1614504--1614592	13	5.9	13	72	27	70	34	13	17	33	1.89
1614485--1614689	96	2.1	96	81	7	229	35	15	16	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1614679--1614805	52	2.4	52	93	0	218	37	19	16	26	1.93
1628617--1628733	15	8.0	15	75	12	93	82	11	5	0	0.85
1628615--1628723	30	3.8	28	80	10	105	84	10	4	0	0.81
1628612--1628732	31	3.9	30	79	12	111	83	11	4	0	0.82
1628614--1628732	39	3.1	38	81	13	136	84	10	4	0	0.81
1628614--1628723	1	110.0	1	71	0	67	84	10	4	0	0.80
1630189--1630435	28	8.8	28	84	8	322	35	31	16	16	1.91
1630155--1630425	113	2.4	112	85	7	361	35	30	15	19	1.92
1630189--1630425	85	2.8	86	91	3	392	36	31	15	16	1.90
1630416--1630504	31	2.8	32	82	3	108	19	31	15	33	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13