genome.fa.s414.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold414
Parameters: 2 7 7 80 10 50 1000
Length:  2018024

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  7  of  13  ( 1553 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
953074--953162	27	3.2	27	76	13	90	28	15	35	20	1.93
953059--953220	65	2.7	60	86	7	204	26	15	36	21	1.93
953060--953321	31	8.5	31	73	14	193	27	15	35	21	1.94
963624--963651	13	2.2	13	100	0	56	39	17	14	28	1.89
963692--963758	33	2.0	33	88	0	98	40	14	11	32	1.83
963714--963738	13	1.9	13	100	0	50	32	16	16	36	1.90
964619--965126	49	10.7	49	83	9	644	31	17	25	25	1.97
964619--965126	141	3.6	142	84	8	580	31	17	25	25	1.97
964663--965131	92	5.1	92	87	7	630	30	17	26	25	1.97
965126--965245	32	3.7	33	88	5	183	20	18	35	26	1.95
965212--965373	65	2.7	60	84	7	195	27	15	35	21	1.93
965224--965467	31	7.9	31	76	10	187	27	16	34	20	1.95
966468--966505	17	2.2	17	90	0	58	0	7	5	86	0.69
975780--975807	13	2.2	13	100	0	56	39	17	14	28	1.89
975848--975914	33	2.0	33	88	0	98	40	14	11	32	1.83
975870--975894	13	1.9	13	100	0	50	32	16	16	36	1.90
976775--977283	49	10.7	49	83	8	653	31	17	25	25	1.97
976819--977288	92	5.1	92	87	7	639	30	17	26	25	1.97
977283--977402	32	3.7	33	88	5	183	20	18	35	26	1.95
977369--977530	65	2.7	60	84	7	195	27	15	35	21	1.93
977507--977630	63	2.0	61	84	6	160	28	17	33	20	1.96
977370--977631	31	8.5	31	73	14	193	28	16	34	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
987912--988060	52	2.9	52	91	2	237	31	17	18	32	1.94
988046--988073	13	2.2	13	100	0	56	39	17	14	28	1.89
988114--988180	33	2.0	33	88	0	98	40	14	11	32	1.83
988136--988160	13	1.9	13	100	0	50	32	16	16	36	1.90
989041--989549	49	10.7	49	84	8	653	31	17	25	25	1.97
989085--989554	92	5.1	92	87	7	639	30	17	25	25	1.97
989549--989668	32	3.7	33	88	5	183	20	18	35	26	1.95
989650--989738	27	3.2	27	76	13	90	28	15	35	20	1.93
989635--989796	65	2.7	60	86	7	204	26	15	36	21	1.93
989641--989896	65	4.1	61	78	10	168	28	16	33	21	1.95
989712--989891	94	1.9	96	85	6	251	26	17	34	21	1.95
989636--989897	31	8.5	31	73	14	202	27	16	35	20	1.94
1000204--1000352	52	2.9	52	88	2	219	31	16	18	33	1.93
1000338--1000365	13	2.2	13	100	0	56	39	17	14	28	1.89
1000406--1000472	33	2.0	33	85	0	89	41	13	11	32	1.81
1000428--1000452	13	1.9	13	100	0	50	32	16	16	36	1.90
1001448--1001489	22	1.9	22	90	0	66	14	9	26	50	1.73
1001471--1001619	34	4.4	34	85	0	190	22	6	27	42	1.78
1001470--1001620	68	2.2	68	95	0	266	22	6	27	43	1.78
1005267--1005308	19	2.2	18	84	16	50	54	11	0	33	1.37
1007967--1008043	29	2.6	29	79	8	84	51	0	2	45	1.14
1009432--1009480	25	2.0	25	84	8	64	61	2	0	36	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1010334--1010663	73	4.6	72	82	5	346	29	1	13	55	1.46
1010320--1010663	72	4.8	72	80	8	319	29	1	13	55	1.46
1011865--1011952	39	2.3	38	88	4	122	40	7	3	47	1.49
1013385--1013521	16	8.6	16	80	0	148	13	16	29	40	1.87
1014300--1014353	14	3.6	15	78	9	56	42	0	0	57	0.98
1019204--1019323	16	7.5	16	78	7	127	13	17	30	39	1.88
1019199--1019322	64	1.9	64	88	3	187	14	17	29	38	1.89
1019204--1019331	32	4.0	32	81	9	143	12	17	30	39	1.86
1021782--1021823	18	2.5	17	80	7	50	21	4	7	66	1.35
1021776--1021825	16	3.1	16	78	13	57	24	6	8	62	1.46
1022681--1022744	19	3.4	19	81	12	71	62	0	0	37	0.95
1022670--1022753	36	2.4	35	80	6	98	59	1	0	39	1.05
1023856--1023893	20	1.9	19	89	5	58	44	2	0	52	1.14
1024196--1024313	62	1.9	62	80	3	139	27	16	11	44	1.82
1024810--1024843	17	2.1	17	88	5	52	58	2	0	38	1.13
1025137--1025218	2	44.0	2	75	13	59	45	0	4	50	1.23
1025187--1025219	12	2.8	12	100	0	66	57	0	0	42	0.98
1028229--1028259	16	2.0	15	93	6	53	12	9	25	51	1.70
1030008--1030060	27	2.0	27	92	0	88	39	11	5	43	1.64
1030059--1030090	12	2.7	12	95	0	55	18	25	37	18	1.94
1034795--1034847	27	2.0	27	92	0	88	39	11	5	43	1.64
1034846--1034877	12	2.7	12	95	0	55	18	25	37	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1039827--1040003	64	2.8	64	85	5	243	28	18	19	33	1.95
1043880--1043918	21	1.9	20	89	5	60	35	10	15	38	1.81
1046946--1046990	2	22.5	2	100	0	90	51	0	0	48	1.00
1047909--1047950	20	2.0	23	86	13	63	69	9	2	19	1.28
1048406--1048456	25	2.0	25	96	0	93	39	15	7	37	1.77
1049328--1049362	16	2.1	17	89	5	54	45	14	0	40	1.45
1050576--1050604	3	9.7	3	100	0	58	65	0	0	34	0.93
1059625--1059667	6	7.2	6	89	0	68	18	16	32	32	1.93
1059743--1059798	22	2.4	25	69	22	59	53	0	5	41	1.24
1062344--1062414	27	2.6	27	90	0	97	38	12	29	19	1.89
1064369--1064393	13	1.9	13	100	0	50	68	0	0	32	0.90
1064639--1064668	15	2.1	14	93	6	51	83	0	13	3	0.77
1064982--1065036	21	2.7	21	81	10	69	30	0	0	69	0.89
1064966--1064990	5	5.0	5	100	0	50	20	0	0	80	0.72
1065034--1065096	26	2.5	26	80	12	76	44	1	1	52	1.20
1065038--1065096	2	31.0	2	76	10	61	45	1	1	50	1.21
1066043--1066179	51	2.7	51	80	7	163	29	8	13	49	1.70
1070966--1071027	20	3.0	21	71	15	58	40	19	14	25	1.90
1072597--1072652	16	3.4	16	90	2	85	58	0	0	41	0.98
1072597--1072659	16	3.9	16	89	2	81	58	0	0	41	0.98
1072682--1072756	34	2.1	38	82	12	95	45	1	1	52	1.17
1076159--1076194	2	18.0	2	100	0	72	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1076194--1076232	2	19.5	2	94	0	69	0	2	48	48	1.15
1076921--1076952	2	16.0	2	93	0	55	50	3	0	46	1.17
1080054--1080307	104	2.4	102	83	7	292	45	5	3	44	1.45
1080162--1080385	111	2.0	109	84	10	287	45	4	4	45	1.45
1080926--1080972	22	2.1	23	88	4	69	48	0	0	51	1.00
1083003--1083084	43	1.9	43	89	0	128	51	4	10	32	1.58
1083499--1083596	43	2.2	45	87	10	139	51	2	11	35	1.49
1083701--1083732	15	2.1	16	94	5	57	43	0	3	53	1.16
1083548--1083894	174	2.0	174	91	1	561	48	5	7	37	1.56
1083919--1083982	22	2.9	22	81	6	67	56	3	10	29	1.49
1085629--1085654	12	2.2	12	100	0	52	76	0	15	7	0.99
1087364--1087418	21	2.6	21	88	0	74	12	23	38	25	1.90
1087362--1087431	21	3.3	21	83	0	59	15	24	35	24	1.94
1087896--1087933	2	19.5	2	89	5	60	47	0	2	50	1.15
1089523--1089576	18	3.2	17	87	7	83	37	11	9	42	1.73
1094505--1094552	17	2.8	17	83	0	60	8	18	18	54	1.68
1094581--1094720	30	4.9	30	72	10	112	12	16	21	49	1.79
1094736--1094786	22	2.3	22	89	0	84	23	7	23	45	1.79
1094853--1094877	11	2.3	11	100	0	50	16	0	24	60	1.36
1099519--1099575	18	3.2	18	89	0	87	47	12	8	31	1.72
1102996--1103062	33	2.0	33	85	0	89	32	10	14	41	1.80
1103103--1103127	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1103136--1103316	52	3.5	52	96	0	317	34	17	17	30	1.93
1110796--1110885	38	2.4	37	83	10	119	37	8	13	40	1.76
1111917--1111986	27	2.7	26	81	2	77	20	17	38	24	1.93
1114379--1114432	20	2.7	20	94	0	99	38	9	14	37	1.79
1116846--1116878	2	16.5	2	100	0	66	48	0	0	51	1.00
1117202--1117328	42	3.2	41	79	12	115	52	2	2	42	1.27
1117276--1117331	17	3.2	17	70	14	51	53	1	0	44	1.11
1117276--1117334	19	3.2	19	71	9	59	52	1	0	45	1.10
1117250--1117360	36	3.1	36	80	5	100	51	0	1	45	1.17
1117659--1117711	25	2.1	25	82	6	63	33	0	0	66	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13