genome.fa.s414.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold414
Parameters: 2 7 7 80 10 50 1000
Length:  2018024

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  13  of  13  ( 1553 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1902493--1902535	18	2.4	18	92	0	68	55	0	0	44	0.99
1902456--1902548	30	3.4	26	79	13	80	54	0	0	45	0.99
1902576--1902652	23	3.4	24	75	12	65	42	0	1	55	1.07
1902597--1902651	17	3.2	17	86	2	74	45	0	1	52	1.11
1903640--1903711	12	6.1	11	73	12	54	62	0	0	37	0.95
1903660--1903718	24	2.5	23	81	8	73	61	0	0	38	0.96
1905429--1905470	2	21.0	2	100	0	84	50	0	0	50	1.00
1906721--1906754	9	3.9	9	88	7	52	32	0	2	64	1.08
1914501--1914554	25	2.1	25	86	3	72	44	9	3	42	1.54
1914614--1914659	24	1.9	24	86	0	65	32	0	0	67	0.91
1916107--1916188	26	2.7	31	71	21	84	52	1	0	46	1.08
1916113--1916167	26	2.0	28	89	6	87	56	0	0	43	0.99
1918344--1918415	21	3.5	20	84	7	83	38	12	15	33	1.85
1920941--1921138	97	2.0	97	84	3	256	29	25	10	34	1.89
1921689--1921742	20	2.7	21	85	8	76	31	16	11	40	1.84
1922637--1922682	21	2.3	21	88	7	69	19	15	17	47	1.82
1927656--1927681	13	2.0	13	100	0	52	38	15	15	30	1.88
1927635--1927701	33	2.0	33	88	0	98	43	16	14	25	1.86
1927721--1927820	19	5.9	18	73	26	103	39	15	11	35	1.82
1927743--1927799	13	3.9	13	74	24	51	36	15	12	35	1.85
1927724--1927818	32	3.0	32	96	0	172	37	15	11	34	1.84
1927876--1927932	21	2.7	21	97	0	105	36	19	10	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1933807--1933835	15	1.9	15	100	0	58	41	41	6	10	1.66
1939667--1939743	20	3.8	20	72	8	66	35	16	9	38	1.81
1942227--1942696	80	6.0	78	77	10	374	30	25	10	33	1.90
1942260--1942697	153	2.8	158	78	9	432	30	26	11	31	1.91
1942245--1942689	233	1.9	233	81	5	542	30	25	11	32	1.91
1943544--1943610	21	3.2	20	81	10	89	32	14	14	37	1.88
1943595--1943619	13	1.9	13	100	0	50	32	16	16	36	1.90
1943628--1943756	52	2.5	52	92	2	215	36	16	17	29	1.92
1952200--1952239	21	1.9	21	84	0	53	47	15	12	25	1.80
1953418--1953449	15	2.1	15	94	0	55	87	0	9	3	0.64
1955880--1955938	20	2.9	20	85	10	75	42	13	18	25	1.87
1955986--1956011	13	2.0	13	100	0	52	38	15	15	30	1.88
1955968--1956032	32	2.0	32	87	6	94	40	18	13	27	1.89
1956066--1956109	20	2.1	22	91	8	74	40	20	9	29	1.83
1957249--1957287	13	3.0	13	96	0	69	30	17	15	35	1.91
1957409--1957455	21	2.3	20	82	10	60	31	19	4	44	1.70
1959883--1959908	13	2.0	13	100	0	52	38	15	15	30	1.88
1959865--1959929	32	2.0	32	87	6	94	40	18	13	27	1.89
1959963--1960006	20	2.1	22	91	8	74	40	20	9	29	1.83
1964419--1964463	22	2.1	21	83	4	54	53	2	2	42	1.25
1964469--1964550	16	5.0	17	75	8	80	57	4	2	35	1.33
1964444--1964495	22	2.3	23	74	9	54	55	3	3	36	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1964469--1964571	16	6.4	16	74	5	73	59	3	1	34	1.27
1964524--1964566	22	2.0	22	81	9	52	60	2	0	37	1.10
1964526--1964587	32	1.9	32	86	0	88	58	6	0	35	1.24
1964469--1964571	48	2.1	49	82	8	122	59	3	1	34	1.27
1964744--1964783	19	2.1	19	85	4	53	32	0	0	67	0.91
1966383--1966487	41	2.6	39	82	10	104	38	5	7	48	1.56
1966486--1966597	40	2.8	41	80	4	129	30	21	8	39	1.84
1976943--1976979	2	19.0	2	94	5	67	48	0	0	51	1.00
1977346--1977537	96	2.0	96	96	0	357	27	16	20	34	1.94
1979766--1979927	82	2.0	82	93	0	279	27	29	12	31	1.93
1984428--1984491	14	4.3	15	75	21	55	64	1	0	34	1.03
1984534--1984597	25	2.6	25	76	13	71	51	0	0	48	1.00
1984538--1984590	14	4.0	14	73	14	58	50	0	0	49	1.00
1985255--1985331	25	3.3	24	76	18	74	58	0	0	41	0.98
1985263--1985324	18	3.1	18	72	27	61	58	0	0	41	0.98
1986026--1986128	3	34.7	3	81	1	109	30	27	3	38	1.74
1986840--1986873	17	2.1	17	88	5	52	14	23	14	47	1.82
1987186--1987532	147	2.4	145	86	6	477	49	12	10	26	1.74
1990247--1990284	20	1.9	20	84	10	51	60	0	0	39	0.97
1992075--1992140	17	3.8	17	75	16	55	59	0	1	39	1.07
1992113--1992296	44	3.8	49	73	19	172	51	2	1	45	1.23
1992088--1992268	96	1.9	96	85	8	253	50	2	1	45	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1992265--1992330	17	4.0	16	81	12	80	57	0	0	42	0.98
1992275--1992316	21	2.2	19	87	12	59	59	0	0	40	0.97
1992264--1992337	17	4.4	17	76	17	66	55	0	0	44	0.99
1992311--1992390	29	2.8	29	75	9	83	52	3	1	42	1.27
1992694--1992726	13	2.4	14	95	5	59	60	0	0	39	0.97
1992969--1993000	2	16.0	2	100	0	64	50	0	0	50	1.00
1994151--1994189	19	1.9	19	85	10	51	33	2	2	61	1.23
1994829--1994876	17	2.8	17	78	15	53	10	2	10	77	1.09
1994850--1994891	21	1.9	22	85	9	59	14	0	7	78	0.95
1994825--1994910	39	2.2	38	81	8	93	16	2	6	74	1.14
1994941--1994970	15	2.0	15	93	0	51	26	0	30	43	1.55
1995235--1995277	21	2.0	21	82	8	52	39	0	2	58	1.11
1995445--1995558	20	5.8	20	71	15	60	16	2	7	72	1.19
1997402--1997440	16	2.4	17	86	4	53	89	2	5	2	0.63
1997402--1997448	14	3.5	13	85	8	58	87	2	8	2	0.71
1997862--1997956	45	2.1	45	98	0	181	15	8	25	50	1.72
1999367--1999436	33	2.1	33	89	0	104	34	11	14	40	1.82
1999387--1999411	13	1.9	13	100	0	50	36	16	16	32	1.90
1999476--1999500	13	1.9	13	100	0	50	32	16	16	36	1.90
1999509--1999637	52	2.5	52	92	0	213	37	17	15	30	1.90
2007907--2008140	33	6.8	34	86	8	296	20	34	12	32	1.90
2007875--2008355	70	7.2	67	75	14	365	20	33	12	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2007907--2008140	104	2.3	103	91	4	373	20	34	12	32	1.90
2008054--2008226	87	2.0	88	93	3	296	20	31	13	34	1.91
2008141--2008335	71	2.8	69	88	6	295	19	32	12	35	1.90
2007958--2008330	191	1.9	191	86	7	524	19	32	12	34	1.90
2008008--2008296	158	1.8	157	92	0	488	20	32	12	33	1.91
2008167--2008355	104	1.8	104	87	4	283	20	33	12	33	1.90
2008149--2008355	34	5.9	35	82	11	253	19	34	12	33	1.89
2008167--2008388	104	2.1	102	82	8	252	21	34	13	31	1.91
2008340--2008409	33	2.1	35	94	5	126	25	37	17	20	1.94
2008409--2009277	49	17.8	49	84	7	1065	25	25	17	31	1.97
2008407--2009385	340	2.8	341	85	7	1200	24	25	16	32	1.96
2009129--2009504	55	6.7	55	74	12	302	24	23	14	36	1.93
2009129--2009515	170	2.3	164	92	4	648	24	24	14	36	1.93
2009397--2009516	60	2.0	61	85	1	161	24	24	13	38	1.91
2010314--2010383	33	2.1	33	89	0	104	34	11	14	40	1.82
2010334--2010358	13	1.9	13	100	0	50	36	16	16	32	1.90
2010423--2010447	13	1.9	13	100	0	50	32	16	16	36	1.90
2010456--2010584	52	2.5	52	92	0	213	37	17	15	30	1.90
2017230--2017300	37	1.9	37	88	0	106	59	0	2	38	1.12
2017373--2017447	16	4.7	16	81	6	73	2	16	34	46	1.61
2017375--2017463	32	2.8	32	81	8	85	4	14	35	44	1.66
2017629--2017690	26	2.4	25	82	10	72	38	0	1	59	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2017673--2017740	18	3.9	18	70	18	72	41	0	1	57	1.08
2017681--2017757	32	2.4	31	83	12	93	40	0	1	58	1.06
2017822--2017891	33	2.2	30	82	12	79	37	0	1	61	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13

The End!