genome.fa.s414.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold414
Parameters: 2 7 7 80 10 50 1000
Length:  2018024

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  3  of  13  ( 1553 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
338871--338902	3	10.7	3	100	0	64	31	34	0	34	1.58
342158--342299	42	3.4	42	73	7	128	40	15	26	17	1.89
342017--342651	84	7.6	83	73	11	422	37	14	29	19	1.90
342496--342637	43	3.3	43	72	15	127	38	14	29	17	1.90
342847--343184	85	4.0	85	85	3	423	35	17	28	18	1.93
342705--343184	42	11.4	42	79	5	387	36	16	27	19	1.93
342706--343184	126	3.8	124	77	4	431	36	16	26	19	1.93
344154--344358	89	2.3	88	80	2	232	45	14	17	22	1.84
344145--344301	44	3.5	44	74	5	127	47	13	17	22	1.82
344154--344404	88	2.8	88	77	5	238	46	13	17	21	1.83
345477--345589	10	10.6	10	72	16	59	3	11	5	79	1.02
345526--345579	17	3.2	17	84	2	65	0	11	3	85	0.73
345475--345560	6	14.7	6	69	18	56	4	15	2	77	1.02
345477--345575	45	2.1	48	81	5	123	4	13	4	78	1.03
345478--345589	39	2.9	39	78	11	92	3	11	5	79	1.02
353121--353216	8	11.6	8	74	14	79	16	3	3	77	1.03
353121--353216	17	5.3	17	75	14	75	16	3	3	77	1.03
353107--353166	31	1.9	31	93	6	104	15	1	3	80	0.93
353107--353189	14	5.9	13	68	24	53	15	2	4	77	1.05
353131--353176	22	2.2	21	88	7	67	13	4	4	78	1.05
355447--355526	12	6.7	12	72	16	51	2	20	1	76	0.97
355468--355504	14	2.7	14	88	12	51	2	21	0	75	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
361513--361588	20	3.8	19	82	6	98	38	13	15	32	1.86
361391--361567	71	2.5	72	83	2	214	40	11	16	31	1.85
362351--363205	28	29.2	29	79	7	663	22	18	28	30	1.97
362364--363205	85	9.6	86	77	9	643	23	17	28	30	1.97
362396--363826	113	12.6	113	78	8	662	26	16	29	27	1.97
362847--363191	124	2.8	124	83	6	393	19	17	28	33	1.95
363202--363792	27	21.7	27	79	9	292	30	14	30	24	1.95
363182--363792	191	3.2	189	87	3	780	30	14	30	24	1.94
363213--363792	218	2.7	215	84	6	715	30	14	31	24	1.94
372194--372270	20	3.8	20	68	1	64	38	11	18	31	1.86
372148--372323	91	1.9	92	87	1	255	42	10	17	28	1.83
372999--373882	28	30.2	28	78	8	653	23	17	29	29	1.97
372999--374072	113	9.3	113	77	10	623	24	17	29	28	1.97
373012--373882	141	6.0	140	78	9	649	23	17	29	29	1.97
373555--373809	124	2.1	124	89	0	384	20	18	29	32	1.96
373834--374224	27	14.3	27	81	4	374	31	14	29	24	1.94
373834--374224	55	7.1	54	79	6	358	31	14	29	24	1.94
373834--374254	137	3.1	136	82	5	472	32	14	28	24	1.94
373813--374224	164	2.5	163	83	4	488	32	14	29	24	1.94
373895--374268	83	4.5	83	82	5	244	33	13	28	23	1.93
378527--378732	20	9.8	19	72	14	133	42	12	15	30	1.83
378528--378640	40	2.8	40	97	0	208	41	14	14	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
378571--378743	91	1.9	91	95	0	310	42	11	16	29	1.84
378479--378731	131	1.9	132	91	0	418	43	11	15	28	1.83
381203--381253	12	3.9	12	78	16	57	39	11	5	43	1.66
385940--385990	12	3.9	12	78	16	57	39	11	5	43	1.66
392932--392964	3	11.0	3	100	0	66	0	33	0	66	0.92
393565--393604	12	3.5	12	90	10	66	32	0	0	67	0.91
393586--393624	14	2.8	14	80	0	51	30	0	0	69	0.89
393675--393730	24	2.5	23	83	11	71	60	1	0	37	1.07
393685--393729	24	1.9	23	90	4	72	60	2	0	37	1.09
393812--393874	29	2.2	29	86	8	85	58	0	0	41	0.98
393829--393889	29	2.0	30	87	9	88	60	0	0	39	0.97
406828--406909	28	2.9	28	80	7	96	26	17	31	24	1.97
406892--407062	51	3.3	51	78	4	189	33	11	25	29	1.91
407045--407116	27	2.6	28	86	6	94	20	20	34	23	1.96
409564--409590	13	2.1	13	100	0	54	40	14	14	29	1.86
409630--409697	19	3.9	18	76	23	83	38	14	11	35	1.83
409652--409676	13	1.9	13	100	0	50	32	16	16	36	1.90
409633--409695	32	2.0	32	96	0	117	36	15	12	34	1.86
409752--409808	21	2.7	21	94	0	96	36	17	10	35	1.84
409829--409856	14	2.0	14	100	0	56	21	7	0	71	1.09
414541--414578	5	8.2	5	94	5	55	78	21	0	0	0.74
415996--416206	29	7.3	29	79	7	182	32	29	17	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
415992--416206	57	3.8	57	76	7	204	32	29	16	21	1.95
415996--416204	115	1.8	115	85	6	298	32	29	17	21	1.96
416020--416206	86	2.2	86	81	3	216	32	29	17	21	1.96
416226--416683	43	10.1	43	76	13	393	24	24	17	33	1.96
416310--416680	49	7.9	49	75	13	361	24	25	17	33	1.96
416268--416683	92	4.5	92	92	1	647	24	24	17	33	1.96
423604--423687	6	14.0	6	75	17	77	1	19	1	78	0.88
423599--423686	32	2.9	31	82	11	94	1	20	1	77	0.90
423610--423683	19	3.9	19	75	18	66	1	20	1	77	0.92
425788--425924	11	12.5	11	75	16	106	59	0	1	38	1.12
425780--425881	23	4.3	23	77	11	109	56	0	0	42	1.05
425789--425923	12	11.2	12	72	20	79	60	0	1	37	1.12
425796--425878	6	14.0	6	69	25	52	61	0	0	38	0.96
425788--425934	23	6.1	25	74	15	98	59	0	1	38	1.11
425796--425924	20	6.9	19	69	24	80	59	0	0	38	1.08
426324--426384	6	10.3	6	71	28	51	45	0	0	54	1.00
426324--426380	21	2.8	19	82	15	69	43	0	0	56	0.99
426321--426384	15	4.1	15	78	13	76	45	0	0	54	0.99
426324--426389	21	3.1	21	76	20	66	46	0	0	53	1.00
430015--430049	2	17.5	2	100	0	70	51	0	0	48	1.00
429981--430023	22	1.9	23	85	4	61	58	0	6	34	1.25
430717--430767	24	2.1	24	82	7	59	68	3	1	25	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
436702--436840	59	2.4	59	92	3	230	28	10	20	41	1.84
438299--438331	15	2.1	16	88	5	50	57	6	9	27	1.53
438584--438627	23	1.9	23	86	9	63	40	4	2	52	1.34
439380--439438	2	29.5	2	85	0	82	42	0	1	55	1.09
442133--442186	26	2.0	27	82	10	67	48	1	1	48	1.23
442149--442182	17	2.0	17	88	0	50	52	0	0	47	1.00
443255--443295	19	2.2	18	91	4	64	26	2	0	70	0.99
445230--445264	2	17.5	2	93	0	61	48	2	0	48	1.16
449023--449053	6	5.2	6	92	0	53	80	0	19	0	0.71
450087--450140	22	2.4	21	85	11	72	42	0	0	57	0.98
450093--450139	24	2.0	24	87	8	69	42	0	0	57	0.98
450119--450165	14	3.3	15	79	8	53	36	0	0	63	0.94
450688--450834	77	2.0	77	83	9	191	51	2	2	44	1.24
450816--450848	17	1.9	17	88	11	50	69	0	0	30	0.88
451154--451347	72	2.7	70	77	8	194	32	1	11	54	1.43
452643--452753	39	2.9	38	77	4	114	42	11	2	43	1.55
453006--453070	26	2.5	26	89	0	103	52	6	9	32	1.58
453059--453107	20	2.3	20	80	13	55	59	2	0	38	1.09
454340--454536	88	2.2	91	81	6	224	53	4	3	38	1.37
455654--455692	19	2.1	19	95	0	69	25	10	23	41	1.86
455885--455957	32	2.3	33	83	11	98	27	20	26	26	1.99
455904--455954	16	3.2	16	69	20	52	29	17	23	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
455904--455994	32	2.8	32	85	8	114	30	19	21	27	1.98
456790--456830	20	2.0	20	95	0	73	29	12	4	53	1.58
456792--456842	20	2.5	20	87	0	66	31	13	5	49	1.66
456810--456944	49	2.7	50	80	5	157	31	17	8	42	1.80
461359--461540	67	2.7	67	78	0	193	34	14	24	26	1.94
463633--463707	28	2.7	28	91	2	116	14	14	10	60	1.60
470760--470818	28	2.1	28	84	6	75	59	0	1	38	1.08
480874--480910	2	18.5	2	100	0	74	48	0	0	51	1.00
481698--481737	13	3.0	13	85	7	53	87	7	5	0	0.66
481691--481736	21	2.2	21	84	7	58	84	6	8	0	0.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13