genome.fa.s414.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold414
Parameters: 2 7 7 80 10 50 1000
Length:  2018024

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  4  of  13  ( 1553 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
481699--481737	11	3.7	10	86	10	51	87	7	5	0	0.68
481691--481741	17	2.9	18	79	5	68	84	7	7	0	0.78
481704--481741	14	2.6	15	83	8	60	86	7	5	0	0.69
482936--482980	22	2.0	22	95	0	81	26	11	13	48	1.75
483951--483997	13	3.8	13	76	21	55	31	12	0	55	1.38
495421--495450	2	15.0	2	92	0	51	50	3	0	46	1.18
496404--496445	14	3.0	14	80	10	50	40	0	0	59	0.97
497821--497873	25	2.0	25	89	7	79	52	0	0	47	1.00
504557--504655	37	2.8	37	79	8	98	48	7	12	32	1.67
504574--504667	38	2.5	40	76	15	108	46	7	15	29	1.73
507508--507712	107	1.9	108	82	1	259	30	16	26	26	1.96
507646--508032	52	7.4	51	73	12	273	31	11	26	30	1.92
507536--508037	263	1.9	264	89	3	789	31	12	26	29	1.93
507850--507921	26	2.6	28	83	10	96	20	20	34	23	1.96
507908--508034	51	2.4	51	85	6	164	31	11	24	33	1.90
510400--510425	13	2.0	13	100	0	52	38	15	15	30	1.88
510379--510445	33	2.0	33	85	0	89	44	16	13	25	1.84
510536--510612	21	3.7	21	82	3	93	36	18	11	33	1.87
512134--512184	26	2.1	25	82	17	63	78	11	9	0	0.97
518289--518622	167	2.0	168	84	4	433	45	4	8	41	1.54
520206--520264	30	2.0	30	96	0	109	32	16	18	32	1.94
522844--522956	50	2.3	51	90	3	176	40	12	17	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
522864--522967	50	2.1	50	87	3	147	46	11	16	25	1.81
523472--523508	11	3.4	11	84	0	56	37	0	0	62	0.96
523352--524003	298	2.2	297	90	1	1038	36	8	8	46	1.64
523770--523806	11	3.4	11	84	0	56	37	0	0	62	0.96
527494--527554	31	2.0	31	83	6	79	27	19	6	45	1.75
527777--528080	126	2.4	125	88	8	443	52	1	3	42	1.27
527777--528080	125	2.4	124	88	7	441	52	1	3	42	1.27
528035--528064	15	2.0	15	93	0	51	63	0	0	36	0.95
528385--528661	118	2.4	114	84	11	363	43	2	0	52	1.21
528574--528598	13	1.9	13	100	0	50	24	0	0	76	0.80
528591--528655	20	3.2	20	72	10	60	47	0	0	52	1.00
528617--528663	24	2.0	24	83	8	60	44	0	0	55	0.99
528663--528688	7	3.7	7	100	0	52	69	0	0	30	0.89
528385--528721	110	3.0	110	68	16	242	45	2	0	51	1.19
528385--528725	119	3.0	113	78	9	345	45	2	0	51	1.19
530004--530080	37	2.1	38	88	9	115	41	3	2	51	1.34
530259--530299	21	2.0	21	90	0	64	46	4	0	48	1.23
531835--531875	19	2.2	20	82	8	50	60	2	2	34	1.23
531844--531882	19	2.0	21	90	10	64	58	0	2	38	1.12
532066--532120	2	27.0	2	88	3	83	49	5	0	45	1.25
532747--532805	30	2.0	30	90	9	95	18	3	18	59	1.52
537131--537177	18	2.7	17	80	9	51	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
537130--537177	17	2.8	18	78	12	55	60	0	0	39	0.97
537227--537266	18	2.2	18	86	8	55	45	0	0	55	0.99
537218--537282	25	2.6	25	73	11	69	41	0	0	58	0.98
541571--541599	2	14.5	2	100	0	58	48	0	0	51	1.00
542020--542059	21	2.0	21	85	5	55	62	0	0	37	0.95
542024--542077	16	3.5	15	78	9	56	64	0	0	35	0.94
544509--544539	16	1.9	16	93	0	53	58	19	6	16	1.59
551459--551492	10	3.3	10	84	8	50	23	0	0	76	0.79
551696--551760	29	2.2	29	86	5	87	46	6	0	47	1.27
553413--553480	14	4.9	14	73	7	50	41	0	0	58	0.98
554138--554171	16	2.1	16	94	0	59	44	0	0	55	0.99
554253--554281	2	14.5	2	100	0	58	48	0	0	51	1.00
556693--556734	22	1.9	22	90	0	66	30	16	21	30	1.95
558113--558146	6	5.7	6	96	0	59	82	2	14	0	0.79
558600--558646	25	1.9	25	86	4	69	65	8	10	14	1.45
570600--570644	17	2.9	15	84	12	63	60	0	0	40	0.97
570603--570649	17	2.8	17	87	9	62	57	0	0	42	0.98
570641--570695	27	2.0	28	82	10	69	34	0	1	63	1.05
573250--573298	19	2.5	19	86	3	62	26	10	16	46	1.78
573928--574018	39	2.3	40	77	9	96	34	19	5	40	1.75
576340--576504	84	2.0	84	80	7	192	25	18	3	52	1.62
578541--578592	19	2.7	20	87	6	79	28	13	15	42	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
581140--581168	13	2.1	14	93	6	51	20	6	10	62	1.50
581811--581843	17	1.9	17	93	0	57	33	12	24	30	1.91
581874--581918	16	2.8	16	80	12	56	28	11	31	28	1.91
585339--585459	52	2.3	52	97	0	224	28	18	18	34	1.94
585339--585479	52	2.7	51	90	4	212	30	17	18	33	1.94
585468--585492	13	1.9	13	100	0	50	36	16	16	32	1.90
585557--585581	13	1.9	13	100	0	50	32	16	16	36	1.90
585535--585601	33	2.0	33	88	0	98	40	13	11	34	1.81
586559--586692	43	2.9	45	86	8	191	31	18	23	26	1.98
586516--586702	49	3.9	49	82	10	233	33	17	23	26	1.96
586515--586692	92	1.9	94	93	3	306	32	17	23	25	1.97
586378--586956	266	2.2	266	96	0	1070	35	15	24	24	1.95
586782--587344	49	11.6	49	81	7	634	31	17	25	25	1.97
586781--587344	98	5.8	98	89	6	827	31	17	25	25	1.97
587346--587479	34	4.1	34	89	7	199	15	17	38	28	1.91
587461--588128	34	19.4	36	74	17	395	32	12	33	20	1.91
587482--587668	71	2.7	70	92	3	297	34	12	33	19	1.90
587482--588128	61	10.0	69	71	17	330	33	13	32	20	1.91
587677--588128	34	13.8	33	78	14	415	32	13	32	21	1.92
587591--587765	87	2.0	89	90	3	282	34	13	32	20	1.91
587677--588130	61	6.9	67	81	11	400	32	13	33	20	1.92
587818--587940	64	2.0	64	88	4	189	27	13	36	21	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
587679--588130	95	4.6	94	80	11	413	32	13	32	21	1.92
587482--588128	193	3.3	192	77	16	539	33	13	32	20	1.91
587949--588000	27	1.9	27	96	0	95	21	17	38	23	1.93
588011--588065	28	2.0	28	85	3	76	27	14	34	23	1.94
588040--588127	31	2.7	33	84	3	108	31	15	29	22	1.95
589058--589089	16	2.0	16	93	0	55	0	6	9	84	0.78
589326--589377	8	6.6	8	84	6	54	0	0	13	86	0.57
589326--589377	12	4.5	12	83	7	63	0	0	13	86	0.57
589332--589374	15	2.8	15	86	10	52	0	0	16	83	0.64
596292--596412	52	2.3	52	97	0	224	28	18	18	34	1.94
596292--596432	52	2.7	51	90	4	212	30	17	18	33	1.94
596421--596445	13	1.9	13	100	0	50	36	16	16	32	1.90
596510--596534	13	1.9	13	100	0	50	32	16	16	36	1.90
596488--596554	33	2.0	33	88	0	98	40	13	11	34	1.81
599648--599707	31	1.9	31	86	6	86	40	13	13	33	1.83
600113--600167	13	4.2	12	76	17	56	36	3	0	60	1.15
600421--600480	22	2.7	21	79	18	68	76	6	11	5	1.13
608743--608854	52	2.2	52	85	3	145	43	15	15	25	1.85
608844--609037	91	2.1	92	94	0	336	31	17	12	38	1.86
612441--613315	439	2.0	439	99	0	1741	43	10	13	32	1.79
614723--614776	19	2.8	20	85	2	74	27	16	16	38	1.90
614805--614855	19	2.6	19	87	3	66	37	13	19	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
618563--618594	10	3.2	10	100	0	64	28	31	18	21	1.97
627932--627969	8	4.6	8	90	6	58	47	23	2	26	1.65
628069--628225	31	4.9	32	79	12	124	22	31	14	31	1.93
628096--628374	33	8.6	33	72	12	159	21	32	12	32	1.91
628101--628351	127	2.0	127	88	4	382	21	32	13	31	1.92
628137--628374	68	3.7	66	77	11	240	21	34	13	31	1.91
628365--628441	28	2.6	30	80	12	88	35	25	19	19	1.95
628522--628589	21	3.2	21	63	19	50	25	26	17	30	1.97
628450--629141	52	13.9	49	80	8	659	23	25	17	34	1.96
628450--629141	101	7.0	101	84	5	819	23	25	17	34	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13