genome.fa.s488.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold488
Parameters: 2 7 7 80 10 50 1000
Length:  2093548

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  14  of  14  ( 1614 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2023835--2023859	13	1.9	13	100	0	50	36	16	16	32	1.90
2023869--2023907	20	2.0	19	95	5	69	30	10	23	35	1.88
2024482--2024522	21	2.0	22	85	9	59	21	19	9	48	1.77
2038882--2039775	28	30.8	29	81	6	787	29	28	18	24	1.98
2038882--2039744	57	14.9	56	81	5	841	29	28	18	23	1.98
2038882--2039775	113	7.7	113	81	6	875	29	28	18	24	1.98
2039668--2039785	31	3.7	31	76	4	101	26	26	19	27	1.99
2040717--2040771	20	2.8	20	88	0	83	34	14	14	36	1.87
2043907--2044045	51	2.7	51	86	7	201	43	12	13	30	1.82
2044072--2044135	20	3.2	20	90	2	101	32	18	7	40	1.80
2047925--2048301	79	4.8	80	82	3	406	26	25	15	31	1.96
2060936--2060985	19	2.6	19	93	0	82	30	12	20	38	1.88
2061015--2061041	13	2.1	13	100	0	54	40	14	14	29	1.86
2064180--2064219	9	4.2	9	84	9	53	82	12	5	0	0.82
2064180--2064222	18	2.5	17	85	14	61	83	11	4	0	0.78
2064187--2064224	14	2.8	14	84	4	51	81	10	7	0	0.87
2065301--2065769	62	7.7	61	83	6	538	24	27	18	29	1.98
2065737--2065921	82	2.2	84	83	1	230	21	25	12	40	1.89
2065799--2066133	46	7.9	45	79	10	259	20	25	12	41	1.87
2065735--2065997	83	3.1	82	80	8	244	19	26	12	41	1.86
2065782--2066136	83	4.2	83	76	12	190	21	25	12	40	1.88
2066737--2066808	20	3.6	20	90	0	108	30	15	9	44	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2069103--2069564	79	5.9	78	82	4	421	28	25	14	32	1.94
2073958--2074545	165	3.6	162	80	8	573	30	11	8	50	1.68
2075033--2075100	10	6.8	10	86	6	93	85	0	14	0	0.60
2075033--2075119	11	7.8	11	79	6	86	82	0	16	1	0.72
2075033--2075100	26	2.8	24	89	8	109	85	0	14	0	0.60
2075035--2075109	36	2.1	36	94	0	132	84	0	16	0	0.63
2075041--2075102	15	4.3	15	88	8	85	83	0	16	0	0.64
2075033--2075100	25	2.8	24	89	8	109	85	0	14	0	0.60
2075035--2075100	1	66.0	1	72	0	51	86	0	13	0	0.57
2075036--2075119	10	8.8	9	82	11	80	83	0	15	1	0.71
2076011--2076275	142	1.9	142	85	3	372	37	12	9	41	1.74
2077257--2077314	20	3.0	20	84	2	73	29	10	13	46	1.77
2077353--2077377	13	1.9	13	100	0	50	32	16	16	36	1.90
2077386--2077514	52	2.5	52	94	0	222	34	18	17	29	1.94
2080961--2081004	22	2.0	22	95	0	79	40	25	4	29	1.75
2080969--2081013	22	2.0	22	82	0	54	44	15	8	31	1.77
2084892--2084964	20	3.6	20	79	17	96	34	13	19	32	1.91
2084910--2084985	21	3.7	21	76	16	86	40	11	17	30	1.85
2084892--2084985	41	2.3	41	96	0	170	38	12	18	30	1.88
2085024--2085049	13	2.0	13	100	0	52	38	15	15	30	1.88
2088621--2088664	12	3.5	12	84	6	52	84	6	6	2	0.86
2090063--2090134	28	2.6	28	88	0	99	23	19	34	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2090123--2090560	52	8.3	52	71	13	292	32	11	25	29	1.92
2090124--2090563	104	4.2	104	76	8	426	32	11	25	29	1.92
2090379--2090454	27	2.8	28	88	6	102	21	21	34	23	1.97
2092917--2092942	13	2.0	13	100	0	52	38	15	15	30	1.88
2092897--2092962	33	2.0	32	88	2	96	42	16	15	25	1.87
2092983--2093049	18	3.9	18	79	20	90	37	14	11	35	1.84
2093005--2093029	13	1.9	13	100	0	50	32	16	16	36	1.90
2092986--2093047	31	2.0	32	96	3	117	35	16	12	35	1.87
2093104--2093160	21	2.7	21	97	0	105	36	19	10	33	1.86
2093165--2093224	1	60.0	1	94	0	93	3	1	0	95	0.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14

The End!