genome.fa.s488.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold488
Parameters: 2 7 7 80 10 50 1000
Length:  2093548

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  4  of  14  ( 1614 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
459687--459825	52	2.7	52	86	4	183	30	16	19	33	1.94
459816--459840	13	1.9	13	100	0	50	36	16	16	32	1.90
459881--459947	33	2.0	33	88	0	98	40	14	11	32	1.83
459903--459927	13	1.9	13	100	0	50	32	16	16	36	1.90
460694--461829	52	22.0	52	93	2	1858	33	15	26	25	1.95
461689--461871	43	4.0	43	77	12	186	30	17	26	26	1.97
461633--461871	95	2.5	95	91	2	372	31	16	25	25	1.97
461864--461932	32	2.2	32	92	5	115	18	17	34	28	1.94
461936--461996	28	2.2	27	88	2	86	32	13	31	22	1.92
461964--462088	34	3.7	34	90	1	180	32	12	36	19	1.89
461945--462167	34	6.9	33	79	11	135	31	14	33	21	1.93
462028--462224	32	6.2	32	78	14	174	31	14	31	22	1.93
462072--462224	64	2.4	63	87	6	204	29	15	30	24	1.96
462072--462224	32	4.9	31	84	8	177	29	15	30	24	1.96
462324--462361	16	2.3	17	86	4	51	28	2	23	44	1.67
463187--463220	17	2.0	17	88	0	50	0	8	8	82	0.85
463467--463517	16	3.2	16	72	16	52	3	3	15	76	1.08
463485--463511	14	1.9	14	100	0	54	7	7	7	77	1.12
463469--463529	32	2.0	30	84	12	79	4	4	14	75	1.14
470430--470550	52	2.3	52	97	0	224	28	18	18	34	1.94
470430--470570	52	2.7	51	90	4	212	30	17	18	33	1.94
470559--470583	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
470624--470690	33	2.0	33	88	0	98	40	14	11	32	1.83
470646--470670	13	1.9	13	100	0	50	32	16	16	36	1.90
470867--471318	52	8.7	52	94	0	778	33	15	26	24	1.95
471918--472576	52	12.6	52	93	0	1084	33	15	26	24	1.95
474759--474801	18	2.4	18	82	17	63	9	11	0	79	0.95
483174--483328	84	1.9	83	84	4	213	41	7	16	33	1.77
487429--487500	28	2.5	30	80	13	87	45	4	0	50	1.21
487503--487561	23	2.4	25	75	16	70	42	3	0	54	1.17
487786--487835	12	4.3	12	82	7	59	56	0	0	44	0.99
487788--487832	23	2.0	23	90	0	72	53	0	0	46	1.00
487787--487841	23	2.5	22	80	11	69	52	0	0	47	1.00
488784--488845	16	3.9	16	76	0	70	29	3	6	61	1.37
489656--489708	21	2.5	22	79	11	67	64	1	1	32	1.15
495053--495091	18	2.2	18	85	0	51	30	0	33	35	1.58
500152--500217	33	2.0	33	85	5	89	30	13	13	42	1.83
508485--509043	30	17.8	31	80	7	465	25	28	13	32	1.94
508485--509084	123	4.8	124	81	9	623	25	27	14	32	1.94
508489--509151	62	10.6	62	81	9	549	24	28	14	33	1.94
509030--510058	34	31.8	33	75	14	696	20	30	12	36	1.90
509086--510058	68	15.0	65	80	9	808	20	30	12	36	1.89
509256--509375	27	4.2	27	77	14	114	24	33	10	31	1.90
509046--509474	61	6.8	61	76	15	302	20	30	12	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
509086--509991	357	2.6	356	84	5	1191	20	30	12	36	1.90
509512--510026	61	8.1	61	79	10	462	19	30	12	36	1.89
509512--510026	129	4.0	122	78	11	435	19	30	12	36	1.89
509620--509671	27	1.9	27	84	0	68	21	32	15	30	1.94
509673--509732	27	2.2	27	87	0	84	20	33	13	33	1.91
510058--510326	91	3.0	88	84	4	342	26	25	18	29	1.98
510238--510707	49	9.8	49	74	13	327	26	24	16	32	1.96
510337--510413	39	2.0	39	86	0	109	32	22	16	28	1.96
510147--510455	139	2.2	142	86	2	435	26	26	17	29	1.97
510293--510647	91	3.8	91	85	4	410	26	24	16	32	1.96
510063--510605	230	2.4	231	88	0	784	26	25	17	30	1.97
510467--510759	101	2.9	101	85	1	372	24	24	17	33	1.96
517317--517402	42	2.0	45	82	11	108	52	0	2	45	1.13
518262--518287	2	13.0	2	100	0	52	50	0	0	50	1.00
521004--521037	2	17.0	2	100	0	68	50	0	0	50	1.00
523206--523242	15	2.3	17	90	9	60	48	2	0	48	1.15
523355--523389	2	17.5	2	100	0	70	51	0	0	48	1.00
523599--523636	19	2.0	19	85	10	51	52	13	0	34	1.40
523730--524087	198	1.8	196	84	4	499	44	6	6	42	1.58
524019--524045	14	1.9	14	100	0	54	44	3	0	51	1.19
524554--524582	2	15.0	2	92	7	51	48	0	0	51	1.00
527331--527427	22	4.1	23	68	18	56	56	7	4	31	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
527453--527498	22	2.1	23	88	8	69	45	2	4	47	1.34
528345--528386	17	2.4	18	80	4	50	57	2	2	38	1.25
530569--530596	14	2.0	14	100	0	56	28	0	14	57	1.38
531041--531074	3	11.3	3	100	0	68	67	0	0	32	0.91
531398--531474	21	3.6	22	75	8	70	63	0	0	36	0.95
531392--531492	40	2.6	39	76	16	93	62	0	0	37	0.96
531448--531528	32	2.5	33	86	8	112	58	0	0	41	0.98
531393--531507	21	5.4	21	65	20	60	61	0	0	38	0.96
531467--531518	14	3.4	14	78	19	59	55	0	0	44	0.99
531469--531535	32	2.3	30	80	16	86	55	0	0	44	0.99
532909--532970	13	4.8	13	77	15	58	59	0	1	38	1.07
532895--532976	26	3.2	26	78	13	73	62	1	1	35	1.11
532898--532962	22	2.8	23	72	22	64	61	0	1	36	1.05
533617--533659	22	1.9	23	90	4	70	55	0	0	44	0.99
534047--534139	22	4.3	22	73	18	72	40	1	1	56	1.13
534066--534125	23	2.9	21	83	14	63	45	0	0	55	0.99
534103--534174	32	2.1	35	87	10	105	45	0	0	54	0.99
534128--534199	22	3.4	22	76	16	64	38	1	0	59	1.06
534072--534179	32	3.5	31	74	14	98	43	0	0	56	0.99
534149--534200	21	2.4	21	81	15	61	36	1	0	61	1.07
536668--536755	43	2.0	44	95	4	160	53	11	15	19	1.72
536671--536765	43	2.1	44	88	7	138	55	10	16	16	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
540522--540691	88	1.9	87	90	5	272	40	20	14	24	1.90
547262--547288	13	2.1	13	100	0	54	29	14	14	40	1.86
547272--547328	19	2.9	19	86	2	78	31	17	17	33	1.93
547357--547410	20	2.7	20	85	5	74	37	12	14	35	1.85
553580--553605	13	2.0	13	100	0	52	30	15	15	38	1.88
555500--555576	22	3.6	21	85	3	100	38	2	32	25	1.70
556121--556147	13	2.1	13	100	0	54	29	14	14	40	1.86
556131--556186	19	2.9	19	86	2	76	33	16	14	35	1.88
556216--556284	33	2.1	33	86	5	95	31	11	18	37	1.87
557017--557170	57	2.6	56	85	9	184	46	20	9	23	1.80
558025--558068	22	2.0	22	100	0	88	22	13	13	50	1.77
560454--560509	21	2.7	21	94	0	94	25	12	16	46	1.81
564955--565008	15	3.5	15	72	22	58	29	16	9	44	1.79
566584--567112	157	3.4	151	77	9	505	38	19	18	24	1.93
569268--569311	22	2.0	23	90	4	72	2	22	22	52	1.58
569531--569593	16	4.4	14	72	23	51	63	0	3	33	1.10
569733--569763	7	4.4	7	100	0	62	87	0	0	12	0.55
569811--570159	164	2.1	164	81	3	407	47	7	12	33	1.68
570478--570521	15	2.8	16	82	6	63	47	9	6	36	1.62
571048--571077	15	2.0	15	93	0	51	36	20	6	36	1.79
572245--572277	17	1.9	17	88	11	50	45	9	3	42	1.51
572377--572475	37	2.7	36	82	6	117	36	19	17	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
572460--572518	31	1.9	31	89	0	91	33	18	13	33	1.90
573344--573411	15	4.7	15	72	15	54	54	4	1	39	1.30
573382--573408	13	2.1	13	100	0	54	62	0	0	37	0.95
573347--573438	43	2.1	43	95	0	166	52	4	2	41	1.33
576975--577027	20	2.6	21	79	11	65	37	11	20	30	1.88
577084--577266	52	3.5	51	87	0	231	27	14	12	44	1.82
577084--577274	104	1.8	104	85	3	269	28	14	12	44	1.81
578316--578341	13	2.0	13	100	0	52	38	15	15	30	1.88
580558--580602	21	2.1	21	84	8	56	53	4	20	22	1.63
584499--584536	13	2.9	13	96	0	67	31	18	15	34	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14