genome.fa.s488.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold488
Parameters: 2 7 7 80 10 50 1000
Length:  2093548

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  5  of  14  ( 1614 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
584656--584702	21	2.3	21	79	20	55	34	19	4	42	1.70
584658--584700	20	2.2	19	84	16	52	32	18	4	44	1.71
586953--586978	13	2.0	13	100	0	52	38	15	15	30	1.88
592305--592329	10	2.5	10	100	0	50	24	0	0	76	0.80
592840--593552	87	8.2	87	75	6	498	29	26	11	31	1.91
592840--593552	88	8.2	88	76	2	528	29	26	11	31	1.91
592847--593624	175	4.5	173	77	6	694	30	25	11	32	1.91
597440--597481	22	1.9	22	85	0	57	23	21	16	38	1.93
603867--603915	24	2.0	24	100	0	98	20	34	0	44	1.52
607253--607349	41	2.4	41	85	0	131	50	5	9	35	1.57
610567--610660	45	2.0	47	84	8	122	40	7	6	45	1.58
611204--611278	27	2.8	26	76	8	69	2	20	4	73	1.12
611877--611903	4	6.8	4	100	0	54	77	0	0	22	0.76
616999--617040	21	1.9	23	85	9	61	40	19	11	28	1.87
620744--620864	52	2.3	52	92	0	206	28	15	18	37	1.91
620744--620884	52	2.7	52	84	4	169	29	15	19	35	1.93
620873--620897	13	1.9	13	100	0	50	36	16	16	32	1.90
620961--620985	13	1.9	13	100	0	50	32	16	16	36	1.90
620939--621005	33	2.0	33	88	0	98	40	13	11	34	1.81
621432--621740	109	2.8	108	90	1	492	30	14	32	23	1.94
621432--621740	136	2.3	136	90	1	476	30	14	32	23	1.94
621432--621740	27	11.3	27	90	1	465	30	14	32	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
628013--628056	20	2.2	20	84	8	54	34	9	15	40	1.79
628103--628128	13	2.0	13	100	0	52	30	15	15	38	1.88
628167--628260	20	4.6	21	80	4	102	29	18	11	40	1.86
628167--628260	41	2.3	41	96	0	170	29	18	11	40	1.86
628887--628915	15	1.9	15	100	0	58	13	51	0	34	1.42
630703--630741	13	3.0	13	96	0	69	35	15	17	30	1.91
630727--630805	20	3.7	20	78	15	77	44	15	15	25	1.85
634655--634699	21	2.1	21	84	8	56	22	20	4	53	1.63
636902--636927	13	2.0	13	100	0	52	30	15	15	38	1.88
636966--637041	21	3.7	21	80	3	100	28	17	11	42	1.84
636987--637059	20	3.6	20	81	3	101	31	19	13	35	1.91
636966--637059	41	2.3	41	98	0	179	29	18	12	39	1.88
639971--640016	25	1.9	23	82	8	56	17	17	15	50	1.79
641069--641114	20	2.3	20	80	0	56	34	2	2	60	1.21
641578--641632	30	1.9	29	82	10	69	32	5	0	61	1.19
643041--643127	6	14.3	6	70	13	54	36	0	0	63	0.95
643039--643127	18	4.9	18	67	17	67	38	0	0	61	0.96
643039--643127	26	3.7	24	70	18	76	38	0	0	61	0.96
643058--643109	13	4.0	13	78	7	52	34	0	0	65	0.93
643077--643145	21	3.2	21	82	11	70	40	0	0	59	0.97
643041--643149	56	1.9	57	82	12	136	39	0	0	60	0.97
645295--645353	13	4.3	13	78	17	57	28	0	5	66	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
645566--645608	3	14.3	3	90	9	70	34	0	0	65	0.93
648834--648869	18	1.9	19	88	5	56	36	2	0	61	1.11
650604--650645	18	2.1	21	83	12	54	47	9	9	33	1.68
658450--658505	23	2.5	24	77	13	66	80	1	16	1	0.88
659794--660942	311	3.7	308	80	5	1120	22	18	21	38	1.94
659804--660952	466	2.5	463	80	4	1283	22	18	21	38	1.94
659774--660950	156	7.6	156	77	5	965	22	18	20	38	1.94
666075--666250	89	2.0	89	82	8	214	28	28	13	28	1.94
666553--666699	44	3.3	43	73	13	120	23	23	14	38	1.92
666811--666973	42	3.9	42	78	4	166	15	26	20	37	1.92
666811--667117	125	2.4	125	78	5	278	15	26	21	36	1.93
667043--667609	43	13.2	43	79	3	487	17	29	16	36	1.92
667599--667681	42	2.0	41	83	6	105	18	26	18	37	1.93
667669--667893	42	5.3	41	76	7	182	20	28	17	32	1.96
667662--667893	85	2.7	84	77	7	211	20	28	18	32	1.96
667784--668032	85	3.0	85	76	9	233	19	29	17	33	1.95
667709--667979	127	2.1	127	78	7	280	20	28	17	33	1.95
668544--668750	43	4.9	42	71	10	152	21	29	15	32	1.95
668512--669542	42	24.3	42	70	5	444	21	29	16	33	1.95
669145--669500	127	2.8	127	79	0	390	19	28	16	34	1.94
668512--669367	85	10.1	85	76	4	509	21	29	16	32	1.95
668998--669536	212	2.5	212	81	3	609	20	29	16	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
669209--669557	85	4.1	85	74	4	276	19	30	17	33	1.94
669574--669844	84	3.2	83	82	5	280	21	30	12	34	1.91
669575--669775	41	4.8	41	70	17	137	21	31	11	34	1.90
669659--669919	84	3.1	84	78	8	221	21	30	13	34	1.92
670038--670594	84	6.6	84	70	9	247	17	24	13	44	1.85
670122--670602	252	1.9	252	83	4	630	17	23	13	45	1.84
669913--670426	168	3.1	166	82	3	598	17	23	13	45	1.84
670649--670678	15	2.0	15	100	0	60	26	13	20	40	1.89
672109--672574	161	2.9	159	81	8	512	27	13	7	51	1.68
674168--675334	312	3.7	309	79	5	1068	23	19	20	36	1.95
674172--675336	468	2.5	468	80	4	1246	23	20	20	36	1.95
674200--675334	156	7.3	155	76	6	953	23	20	20	36	1.95
677975--678464	241	2.0	241	97	1	930	31	19	12	37	1.88
680056--680126	27	2.6	27	88	0	97	21	5	23	49	1.70
681671--681747	21	3.7	21	76	10	86	41	10	11	36	1.76
681676--681769	41	2.3	41	92	0	152	37	12	12	37	1.82
681676--681768	21	4.6	19	72	11	69	37	12	12	36	1.82
681824--681879	20	2.8	21	78	10	71	48	16	5	30	1.68
686172--686242	21	3.4	21	79	12	76	59	2	1	36	1.21
688849--688889	20	2.0	20	86	13	57	41	7	4	46	1.53
689249--689292	16	2.6	16	85	7	52	29	2	0	68	1.02
689227--689296	19	3.8	19	70	24	60	30	2	0	67	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
689886--690056	88	1.9	89	89	1	263	49	11	7	31	1.66
697328--697497	69	2.5	66	88	3	241	24	10	23	41	1.85
698183--698232	18	2.8	18	82	11	75	42	0	0	58	0.98
698183--698237	17	2.9	20	82	17	73	40	0	0	60	0.97
698880--698935	17	3.3	17	68	9	51	41	0	1	57	1.09
698800--698966	29	5.6	30	74	15	143	45	1	1	51	1.19
698816--699035	100	2.3	99	80	10	242	42	2	2	52	1.28
699145--699196	26	2.0	26	82	17	65	42	0	1	55	1.10
699154--699202	21	2.3	21	79	6	55	42	0	2	55	1.11
699754--699826	6	11.4	7	73	19	70	41	0	1	57	1.07
699752--699826	13	5.9	13	76	14	59	41	0	1	57	1.07
699835--699901	16	4.2	16	74	12	59	28	1	0	70	0.96
699832--699894	31	2.1	31	91	8	103	30	0	0	69	0.88
711031--711199	52	3.2	52	79	8	157	33	13	24	28	1.93
711173--711257	27	3.1	27	86	8	111	25	21	30	22	1.98
710965--711368	212	1.9	212	88	3	616	32	13	25	27	1.94
713702--713727	13	2.0	13	100	0	52	38	15	15	30	1.88
713681--713747	33	2.0	33	88	0	98	43	16	14	25	1.86
713767--713834	19	3.9	18	75	23	74	38	13	11	36	1.81
713789--713813	13	1.9	13	100	0	50	32	16	16	36	1.90
713770--713832	32	2.0	32	93	0	108	36	14	12	36	1.84
713870--713925	21	2.7	21	94	0	94	35	17	10	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
720677--720725	2	24.5	2	100	0	98	51	0	0	48	1.00
720747--720786	19	2.2	18	86	4	53	32	15	17	35	1.91
721404--721433	3	10.3	3	92	7	53	66	0	0	33	0.92
723136--723291	21	8.0	20	69	22	93	64	1	0	33	1.02
723144--723263	11	10.8	11	72	23	76	65	0	0	34	0.99
723136--723201	31	2.2	31	87	12	95	68	0	0	31	0.90
723221--723286	22	3.0	21	72	22	55	63	1	0	34	1.04
723246--723291	5	9.0	5	78	21	51	60	2	0	36	1.09
723155--723287	10	12.5	11	74	12	91	64	1	0	33	1.03
723137--723288	25	6.1	26	70	19	101	65	1	0	33	1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14