genome.fa.s488.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold488
Parameters: 2 7 7 80 10 50 1000
Length:  2093548

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  3  of  14  ( 1614 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
315333--315366	10	3.3	10	92	8	59	50	0	0	50	1.00
315325--315366	21	2.0	20	90	4	66	52	0	0	47	1.00
315255--315604	162	2.2	156	80	6	384	43	3	12	40	1.58
315600--315657	29	2.0	29	100	0	116	62	6	10	20	1.50
316113--316162	22	2.4	21	80	9	57	36	6	0	58	1.23
320814--320845	15	2.3	15	89	10	50	59	0	0	40	0.97
320827--320894	33	2.1	32	83	10	84	55	2	4	36	1.35
323661--324242	168	3.5	167	83	5	639	30	10	8	50	1.67
330270--330472	103	2.0	99	85	3	271	29	26	8	35	1.87
332696--332869	79	2.2	79	91	0	276	31	13	26	28	1.94
332824--332898	28	2.7	28	93	4	125	25	20	32	22	1.98
332852--333058	79	2.6	78	89	4	308	29	15	28	25	1.96
332745--332975	107	2.2	106	87	4	322	30	15	27	26	1.96
332692--333096	186	2.2	185	84	4	503	31	14	27	26	1.95
332931--333131	106	1.9	107	84	1	269	27	15	30	26	1.96
333069--333300	51	4.6	51	82	3	270	33	10	25	31	1.89
333065--333300	101	2.3	102	86	4	334	32	10	26	30	1.90
335580--335653	20	3.7	19	87	7	103	41	13	16	28	1.86
338774--338859	19	4.8	18	71	25	65	34	12	16	36	1.87
338815--338839	13	1.9	13	100	0	50	36	16	16	32	1.90
338796--338866	32	2.2	32	92	0	115	32	12	18	36	1.88
338911--338938	13	2.2	13	100	0	56	28	14	17	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
345905--346033	52	2.5	52	90	0	222	27	19	18	34	1.95
345905--346053	52	2.9	51	86	4	176	29	18	18	32	1.95
346042--346066	13	1.9	13	100	0	50	36	16	16	32	1.90
346119--346215	19	5.8	18	72	27	97	38	18	11	31	1.86
346111--346213	32	3.2	32	92	0	179	36	19	11	32	1.88
346170--346194	13	1.9	13	100	0	50	32	16	16	36	1.90
348046--348333	27	10.6	27	86	0	315	25	29	13	31	1.94
348371--348678	28	10.6	28	76	10	262	29	26	15	27	1.96
348362--348678	56	5.5	57	77	9	302	29	26	15	27	1.96
348460--348524	33	1.9	34	87	6	96	27	21	12	38	1.89
350905--351023	52	2.3	52	94	0	211	28	16	18	36	1.93
350905--351045	52	2.7	52	84	4	178	29	16	19	34	1.93
351034--351058	13	1.9	13	100	0	50	36	16	16	32	1.90
351873--351999	67	1.9	68	86	1	184	38	12	24	24	1.90
352057--352124	21	3.2	21	63	19	50	29	17	26	26	1.98
352012--352668	49	13.7	49	86	6	893	30	17	25	26	1.97
352012--352668	141	4.6	142	90	4	988	30	17	25	26	1.97
352668--352788	33	3.7	33	88	4	183	20	18	33	28	1.96
352661--352788	65	2.0	63	89	6	195	19	17	33	28	1.95
352769--353333	120	4.6	114	74	18	359	29	13	35	21	1.92
352774--353326	34	17.6	33	74	16	285	29	14	35	21	1.92
353111--353255	61	2.4	61	96	0	272	30	13	35	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
353233--353428	67	3.0	66	84	8	256	30	14	35	19	1.92
352868--353425	283	2.0	278	82	10	670	29	14	35	20	1.93
352956--353427	34	14.9	31	74	15	231	29	13	35	20	1.92
361616--361736	52	2.3	52	92	0	206	29	17	17	35	1.93
361616--361756	52	2.7	52	84	4	178	30	17	18	34	1.94
361745--361803	13	4.9	13	69	26	58	35	15	16	32	1.90
361745--361824	34	2.4	34	95	0	151	35	13	17	33	1.89
361867--361891	13	1.9	13	100	0	50	32	16	16	36	1.90
361845--361911	33	2.0	33	85	0	89	41	13	10	34	1.79
362887--362937	20	2.5	20	87	0	66	31	13	15	39	1.87
362855--362987	70	1.9	70	84	3	178	27	14	12	45	1.81
363477--363528	20	2.6	20	90	0	77	32	13	13	40	1.83
363444--363577	70	1.9	70	89	0	205	29	16	11	42	1.84
362811--363990	590	2.0	590	98	0	2288	32	20	13	33	1.91
365784--366005	101	2.2	100	87	2	311	29	22	12	36	1.90
372916--372969	23	2.4	22	81	6	63	50	3	1	44	1.30
373067--373102	18	2.0	18	88	0	54	61	0	0	38	0.96
373072--373113	13	3.2	13	83	10	50	57	0	2	40	1.12
373484--373524	13	3.2	13	80	19	50	34	0	0	65	0.93
373723--373789	20	3.2	20	79	12	71	44	1	0	53	1.09
373833--373878	13	3.1	15	75	15	51	54	0	0	45	0.99
373836--373879	15	3.0	15	77	16	56	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
373851--373907	24	2.3	24	85	11	80	59	0	0	40	0.97
382803--382896	42	2.2	42	94	0	161	44	6	31	17	1.73
382803--382908	42	2.5	42	90	3	151	45	5	32	16	1.71
395639--395681	18	2.4	17	77	11	50	51	4	0	44	1.22
398270--398310	22	1.9	22	85	14	59	48	4	0	46	1.23
398773--398841	24	2.8	23	80	12	75	34	8	2	53	1.47
398774--398841	25	2.8	24	80	8	66	35	8	2	52	1.47
400099--400141	13	3.3	13	84	9	52	58	0	0	41	0.98
401844--401909	29	2.2	30	86	2	89	37	4	0	57	1.19
403304--403345	17	2.4	17	92	8	66	47	2	0	50	1.14
403666--403783	5	24.4	5	70	16	54	41	0	0	58	0.98
403666--403783	28	4.3	27	73	14	89	41	0	0	58	0.98
403740--403797	23	2.5	23	85	2	80	46	0	0	53	1.00
405846--405897	22	2.2	22	86	10	68	82	0	15	1	0.75
405845--405897	7	6.9	7	76	19	52	83	0	15	1	0.74
405846--405896	15	3.3	15	84	12	68	82	0	15	1	0.76
405845--405898	27	2.2	25	83	12	67	83	0	14	1	0.73
413626--414384	28	27.6	27	92	2	1169	23	33	15	28	1.94
413626--414384	55	13.8	54	92	3	1169	23	33	15	28	1.94
414419--414877	94	4.9	95	84	7	558	30	29	18	21	1.97
414429--414877	32	14.2	32	84	6	497	31	29	17	21	1.96
415971--416020	14	3.4	15	78	18	52	76	0	22	2	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
415968--416024	10	5.4	10	80	17	62	78	0	19	1	0.83
419881--419980	23	4.3	22	69	29	66	66	0	0	34	0.92
419879--419968	28	3.2	28	81	12	89	66	0	0	33	0.92
419879--420009	11	12.9	11	67	21	65	64	0	0	34	0.99
419913--419975	19	3.2	19	80	13	74	63	0	0	36	0.95
419881--420003	47	2.6	47	78	8	119	65	0	0	33	0.98
419898--420010	42	2.7	39	76	21	99	63	0	0	35	1.01
420243--420283	3	13.7	3	100	0	82	31	0	0	68	0.90
420705--420733	2	14.5	2	100	0	58	0	48	0	51	1.00
420733--420760	2	14.0	2	100	0	56	50	0	0	50	1.00
420829--420875	18	2.8	17	80	6	51	36	0	6	57	1.24
423314--423398	42	2.0	42	88	0	125	45	2	2	49	1.27
423330--423416	42	2.1	42	80	8	97	47	2	2	48	1.27
431024--431056	13	2.5	13	100	0	66	12	9	27	51	1.69
433380--433449	27	2.6	27	100	0	140	22	20	34	22	1.97
434411--434449	20	2.0	20	90	9	64	46	7	2	43	1.46
434593--434621	2	14.5	2	100	0	58	51	0	0	48	1.00
435206--435254	15	3.1	16	86	13	59	2	20	0	77	0.87
434992--435395	204	2.0	204	89	0	612	19	29	11	39	1.87
436260--436373	52	2.2	52	98	0	219	35	21	21	21	1.96
436593--437518	28	32.2	28	82	7	488	26	15	28	28	1.96
436567--437188	86	7.0	84	78	12	489	24	17	27	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
436900--437076	96	1.8	96	86	2	257	20	19	27	31	1.97
437090--437908	27	29.9	27	83	2	814	30	14	29	26	1.95
437100--437908	137	5.9	136	83	3	898	30	13	29	26	1.94
437072--437932	82	10.5	82	82	2	868	30	14	29	26	1.95
439196--439275	22	3.5	22	78	11	90	11	10	8	70	1.35
443807--443852	21	2.2	20	82	14	58	21	17	19	41	1.90
449247--449289	17	2.6	16	85	7	50	4	20	0	74	1.00
449317--449363	19	2.4	20	82	3	60	21	48	23	6	1.72
456107--457091	495	2.0	493	92	1	1643	26	20	23	29	1.99
459687--459807	52	2.3	52	95	0	215	29	17	18	34	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14