genome.fa.s59.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold59
Parameters: 2 7 7 80 10 50 1000
Length:  3999109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   

This is table  11  of  25  ( 2913 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1744840--1744864	6	4.2	6	100	0	50	84	0	0	16	0.63
1745117--1745213	8	11.4	8	70	22	56	38	1	0	60	1.03
1745147--1745217	33	2.2	33	80	7	83	39	0	0	60	0.97
1745692--1745749	24	2.4	25	82	2	64	65	0	3	31	1.09
1745815--1745867	22	2.4	22	80	0	61	52	1	0	45	1.11
1746277--1746320	16	2.9	15	86	6	54	56	0	2	40	1.11
1746277--1746328	15	3.4	16	78	10	63	57	0	1	40	1.10
1746276--1746354	30	2.4	31	75	14	79	58	0	1	40	1.06
1747370--1747496	8	15.8	8	71	19	86	39	2	0	58	1.11
1747369--1747449	31	2.8	31	83	12	102	44	0	0	55	0.99
1747374--1747485	33	3.4	34	77	8	99	40	1	0	58	1.09
1750095--1750132	19	2.0	19	85	10	51	44	0	0	55	0.99
1750677--1750717	21	2.0	21	85	9	57	48	7	0	43	1.30
1750989--1751014	2	13.0	2	100	0	52	50	0	0	50	1.00
1753076--1753109	14	2.3	15	90	5	52	70	0	0	29	0.87
1753222--1753289	28	2.3	29	75	9	68	47	1	0	51	1.09
1753266--1753308	21	2.0	21	86	8	61	39	0	0	60	0.97
1755950--1756014	10	6.2	10	70	16	51	35	0	0	64	0.94
1755942--1756013	34	2.1	34	97	0	135	37	0	0	62	0.95
1757099--1757206	12	8.3	12	66	24	51	29	23	4	42	1.74
1757097--1757213	41	2.9	41	89	1	173	29	22	5	41	1.77
1757304--1757333	13	2.2	14	94	5	53	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1758214--1758246	2	16.5	2	93	0	57	48	0	3	48	1.17
1759575--1759614	7	5.3	7	85	14	53	70	0	0	30	0.88
1759575--1759619	16	2.9	16	87	9	58	68	0	0	31	0.89
1762136--1762161	2	13.0	2	100	0	52	50	0	0	50	1.00
1763152--1763201	13	3.6	13	79	12	55	40	0	0	60	0.97
1763153--1763200	22	2.3	20	83	16	62	39	0	0	60	0.97
1763160--1763204	15	3.1	15	78	18	51	40	0	0	60	0.97
1763152--1763216	28	2.3	28	78	5	69	46	0	0	53	1.00
1763202--1763233	14	2.2	15	94	5	57	68	0	0	31	0.90
1763223--1763281	30	1.9	30	82	3	73	54	1	1	42	1.20
1765960--1766012	15	3.7	14	78	12	54	35	0	0	64	0.94
1766057--1766099	23	1.9	22	90	4	68	51	0	0	48	1.00
1768900--1769082	34	5.4	34	89	0	269	25	7	27	39	1.82
1768900--1769082	102	1.8	101	93	1	321	25	7	27	39	1.82
1769387--1769449	19	3.3	19	90	0	90	28	17	19	34	1.94
1773517--1773701	34	5.5	34	89	0	273	25	7	27	40	1.82
1773517--1773701	102	1.8	101	94	1	325	25	7	27	40	1.82
1774348--1774390	19	2.3	19	92	4	70	46	0	2	51	1.13
1774355--1774447	44	2.1	43	78	9	100	49	0	1	49	1.07
1774777--1774835	16	3.5	17	73	11	59	25	5	0	69	1.09
1774827--1774891	24	2.7	23	79	11	60	53	1	0	44	1.09
1774838--1774896	28	2.3	24	82	11	64	55	1	0	42	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1777535--1777573	15	2.5	16	80	19	55	10	2	10	76	1.10
1779364--1779411	25	2.0	24	88	8	71	62	0	0	37	0.95
1781551--1781577	2	13.5	2	100	0	54	51	0	0	48	1.00
1782666--1782701	18	1.9	19	88	5	56	44	0	0	55	0.99
1782670--1782716	23	2.0	23	87	0	67	40	0	2	57	1.11
1783325--1783385	21	3.0	21	85	7	81	54	4	0	40	1.22
1783640--1783688	24	2.1	24	88	11	75	67	0	4	28	1.09
1786081--1786131	26	2.0	26	88	0	75	47	1	0	50	1.12
1787630--1787684	27	2.1	26	86	6	76	54	3	5	36	1.41
1790192--1790249	28	2.0	29	86	3	82	27	24	17	31	1.97
1793104--1793128	1	25.0	1	100	0	50	0	0	0	100	0.00
1794217--1794294	27	2.9	27	77	9	86	39	1	0	58	1.06
1796145--1796183	19	2.1	19	85	9	53	46	0	0	53	1.00
1796232--1796264	3	11.0	3	100	0	66	33	0	0	66	0.92
1796738--1796778	21	2.0	21	85	9	57	48	7	0	43	1.30
1798537--1798574	17	2.2	17	100	0	76	42	5	10	42	1.62
1799334--1799378	22	2.0	22	91	8	74	40	0	0	60	0.97
1799645--1799673	2	14.5	2	100	0	58	51	0	0	48	1.00
1801992--1802028	3	12.0	3	94	5	65	35	0	0	64	0.94
1802039--1802103	10	6.2	10	70	16	51	35	0	0	64	0.94
1801987--1802102	34	3.4	34	82	7	137	38	0	0	61	0.96
1803192--1803299	12	8.3	12	66	24	51	29	23	4	42	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1803190--1803306	41	2.9	41	89	1	173	29	22	5	41	1.77
1803374--1803447	34	2.1	36	80	7	89	58	0	2	39	1.13
1803400--1803429	13	2.2	14	94	5	53	56	0	0	43	0.99
1805636--1805675	7	5.3	7	85	14	53	70	0	0	30	0.88
1805636--1805680	16	2.9	16	87	9	58	68	0	0	31	0.89
1808203--1808228	2	13.0	2	100	0	52	50	0	0	50	1.00
1809233--1809282	13	3.6	13	79	12	55	40	0	0	60	0.97
1809234--1809281	22	2.3	20	83	16	62	39	0	0	60	0.97
1809241--1809285	15	3.1	15	78	18	51	40	0	0	60	0.97
1809233--1809297	28	2.3	28	78	5	69	46	0	0	53	1.00
1809283--1809315	15	2.2	15	94	0	57	69	0	0	30	0.88
1809284--1809340	18	3.1	19	80	14	57	66	0	0	33	0.92
1812142--1812185	23	2.0	22	90	4	70	50	0	0	50	1.00
1814987--1815169	34	5.4	34	89	0	269	25	7	27	39	1.82
1814987--1815169	102	1.8	101	93	1	321	25	7	27	39	1.82
1815474--1815536	19	3.3	19	90	0	90	28	17	19	34	1.94
1819602--1819786	34	5.5	34	89	0	273	25	7	27	40	1.82
1819602--1819786	102	1.8	101	94	1	325	25	7	27	40	1.82
1820435--1820483	20	2.5	20	93	3	82	46	0	2	51	1.12
1820522--1820560	20	1.9	20	89	5	60	28	0	2	69	1.02
1820876--1820934	16	3.5	17	73	11	59	25	5	0	69	1.09
1820926--1820990	24	2.7	23	79	11	60	53	1	0	44	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1823612--1823650	16	2.4	17	83	12	55	10	2	10	76	1.10
1824161--1824185	13	1.9	13	100	0	50	64	4	0	32	1.12
1825438--1825485	25	2.0	24	88	8	71	62	0	0	37	0.95
1827629--1827661	2	16.5	2	100	0	66	51	0	0	48	1.00
1828747--1828782	18	1.9	19	88	5	56	44	0	0	55	0.99
1828751--1828797	23	2.0	23	83	0	58	42	0	2	55	1.12
1829408--1829458	21	2.5	21	84	9	70	56	1	0	41	1.10
1829711--1829759	24	2.1	24	88	11	75	67	0	4	28	1.09
1831906--1831930	2	12.5	2	100	0	50	52	0	0	48	1.00
1832148--1832205	27	2.1	27	87	0	80	48	1	1	48	1.22
1832487--1832518	2	16.0	2	100	0	64	50	0	0	50	1.00
1833719--1833773	27	2.1	26	86	6	76	54	3	5	36	1.41
1835410--1835435	2	13.0	2	100	0	52	50	0	0	50	1.00
1836281--1836338	28	2.0	29	86	3	82	27	24	17	31	1.97
1848296--1848350	17	3.1	17	84	7	65	56	0	0	43	0.99
1849160--1849236	39	2.0	36	80	14	84	44	0	2	53	1.14
1849635--1849685	24	2.0	26	81	14	61	45	1	0	52	1.12
1850748--1850813	29	2.4	28	73	11	66	37	0	0	62	0.96
1853646--1853682	4	9.2	4	93	0	65	0	24	2	72	0.97
1854666--1854738	19	4.1	18	74	12	53	36	0	6	56	1.26
1854709--1854776	29	2.4	28	76	13	77	42	0	0	57	0.98
1855412--1855450	19	2.1	19	90	0	60	66	12	0	20	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1855443--1855547	16	6.6	16	68	18	51	59	0	0	39	1.11
1855483--1855542	7	8.1	7	72	17	50	63	0	1	35	1.05
1855491--1855542	14	3.5	14	78	14	59	63	0	1	34	1.06
1855774--1855817	2	22.0	2	100	0	88	50	0	50	0	1.00
1862295--1862335	21	2.0	20	85	4	55	39	7	4	48	1.52
1862416--1862454	18	2.2	18	86	9	53	38	5	10	46	1.60
1862771--1862810	2	20.0	2	100	0	80	50	0	0	50	1.00
1870808--1871339	267	2.0	265	85	1	706	39	18	13	28	1.89
1873997--1874021	12	2.1	12	100	0	50	60	0	40	0	0.97
1875601--1875626	6	4.3	6	100	0	52	30	0	15	53	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25