genome.fa.s59.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold59
Parameters: 2 7 7 80 10 50 1000
Length:  3999109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   

This is table  4  of  25  ( 2913 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
647203--647245	18	2.4	18	88	3	61	65	0	0	34	0.93
647194--647246	20	2.8	17	76	20	52	64	0	0	35	0.94
648240--648270	2	15.5	2	100	0	62	0	51	0	48	1.00
650549--650586	2	19.0	2	100	0	76	50	0	0	50	1.00
650989--651048	17	3.5	17	81	6	59	56	0	5	38	1.21
650989--651048	11	5.2	11	73	16	50	56	0	5	38	1.21
651029--651113	28	2.9	28	72	11	82	56	0	3	40	1.16
651019--651077	11	5.3	11	71	16	50	61	0	1	37	1.07
651283--651318	16	2.3	16	95	4	65	52	0	0	47	1.00
651632--651678	19	2.6	18	83	12	60	31	0	0	68	0.90
651854--651900	13	3.8	12	81	13	51	36	0	2	61	1.08
651869--651917	24	2.0	24	88	0	71	42	0	0	57	0.99
652853--652901	24	2.0	25	84	11	66	44	10	10	34	1.72
653473--653497	2	12.5	2	100	0	50	52	0	0	48	1.00
653839--653872	17	2.1	17	88	5	52	47	0	0	52	1.00
655383--655419	15	2.4	16	82	13	51	45	0	5	48	1.25
656856--656939	11	7.5	11	73	16	66	65	1	0	33	1.00
656856--656952	28	3.4	28	70	12	81	65	1	1	31	1.06
656856--656939	23	3.8	22	76	16	75	65	1	0	33	1.00
656933--656964	12	2.6	12	95	5	55	68	0	6	25	1.12
656904--656968	29	2.3	29	81	7	71	67	1	3	27	1.14
677618--677682	24	2.9	23	77	6	71	38	0	1	60	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
679385--679418	15	2.3	15	100	0	68	52	0	0	47	1.00
679422--679465	19	2.2	22	80	19	60	45	0	0	54	0.99
679426--679465	21	2.1	18	86	13	53	47	0	0	52	1.00
681187--681220	13	2.6	13	85	0	50	70	0	0	29	0.87
682334--682376	23	1.9	23	85	4	61	44	4	0	51	1.22
682341--682392	23	2.2	24	80	10	63	40	1	0	57	1.10
682334--682394	22	2.7	23	78	14	65	42	3	0	54	1.17
682821--682859	14	2.8	13	88	7	51	84	2	10	2	0.81
682976--683051	24	3.2	24	67	20	61	61	0	0	38	0.96
682988--683018	14	2.2	14	100	0	62	64	0	0	35	0.94
682973--683077	46	2.4	42	76	16	113	60	0	0	40	0.97
683002--683057	29	2.0	28	82	10	69	62	0	0	37	0.95
684434--684491	29	2.0	29	83	6	73	39	0	1	58	1.08
685513--685604	45	2.0	46	97	2	177	26	6	10	56	1.58
689873--689932	31	1.9	31	93	0	102	25	20	25	30	1.99
692024--692063	21	1.9	21	100	0	80	40	10	12	37	1.77
697392--697417	2	13.0	2	100	0	52	0	0	50	50	1.00
697822--697869	2	24.5	2	95	4	89	50	0	0	50	1.00
698798--698841	21	2.2	20	87	4	61	27	0	0	72	0.85
700388--700558	85	2.0	86	91	1	281	33	16	17	31	1.93
701274--701301	2	14.0	2	100	0	56	50	0	0	50	1.00
703684--703733	17	3.0	17	82	2	57	0	16	2	82	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
703699--703733	12	2.8	12	86	4	52	0	14	2	82	0.77
703906--703944	17	2.3	17	82	8	53	41	0	5	53	1.23
709937--710033	5	19.8	5	70	16	51	45	0	0	54	0.99
709943--709980	14	2.6	15	88	12	53	50	0	0	50	1.00
709958--710003	23	2.0	24	91	4	76	45	0	0	54	0.99
709937--710040	39	2.6	38	80	15	113	45	0	0	54	0.99
710014--710054	21	1.9	22	90	5	66	43	0	0	56	0.99
710055--710094	20	2.0	19	85	9	53	60	0	0	40	0.97
710687--710745	29	1.9	31	83	10	77	47	0	1	50	1.11
712707--712744	2	19.0	2	100	0	76	50	0	0	50	1.00
727969--728022	14	3.7	15	76	13	51	48	0	0	51	1.00
728356--728417	32	2.0	32	87	6	92	51	3	1	43	1.27
728440--728483	22	1.9	23	81	9	54	50	13	0	36	1.42
737960--737984	2	12.5	2	100	0	50	0	48	0	52	1.00
741176--741249	38	2.1	36	85	14	100	44	0	0	55	0.99
741194--741258	19	3.4	19	70	10	60	43	0	0	56	0.99
742530--742599	20	3.5	20	79	11	63	40	0	1	58	1.07
742610--742673	26	2.6	25	82	7	85	56	0	3	40	1.15
742605--742760	26	7.5	21	69	26	79	49	0	1	49	1.09
742642--742763	57	2.1	56	82	12	151	48	0	0	50	1.06
743173--743216	24	1.9	22	86	9	61	38	0	0	61	0.96
744145--744174	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
746199--746227	14	2.1	14	100	0	58	48	44	0	6	1.29
746811--746846	14	2.5	14	86	4	54	88	0	11	0	0.50
746807--746851	18	2.6	18	89	3	65	84	0	15	0	0.62
746808--746841	7	5.1	7	96	3	54	91	0	8	0	0.43
748143--748424	96	2.9	96	95	0	501	39	14	19	26	1.90
749671--749704	14	2.4	14	90	0	59	70	0	0	29	0.87
750293--750332	4	10.0	4	94	0	62	50	20	0	30	1.49
750319--750359	2	20.5	2	89	0	64	48	2	2	46	1.28
755839--755900	22	2.8	22	92	0	97	19	29	19	32	1.96
759417--759455	17	2.5	16	84	15	55	41	5	0	53	1.23
765386--765422	4	9.2	4	100	0	74	27	0	0	72	0.84
765988--766042	22	2.4	24	76	8	62	49	0	0	50	1.00
766080--766142	21	3.0	21	77	17	60	57	0	0	42	0.99
766115--766156	21	2.0	21	85	4	57	50	0	4	45	1.23
769620--769659	18	2.2	18	91	8	64	62	0	5	32	1.17
769674--769784	25	4.2	26	74	19	97	59	0	0	39	1.04
769663--769787	27	4.5	27	75	20	100	60	0	1	37	1.12
769686--769788	16	6.5	15	73	24	70	61	0	0	37	1.03
769686--769788	33	3.2	32	76	14	81	61	0	0	37	1.03
769687--769787	10	10.1	10	77	12	82	60	0	0	38	1.04
769714--769785	6	12.8	6	72	24	59	61	0	0	38	0.96
769636--769786	51	2.9	54	75	15	124	58	0	1	38	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
769713--769787	4	20.0	4	73	13	52	60	0	0	40	0.97
772189--772233	17	2.6	17	78	3	54	62	0	0	37	0.96
772475--772681	104	2.0	104	91	1	335	31	14	13	41	1.83
774186--774261	22	3.5	21	69	16	66	50	0	0	50	1.00
774478--774519	14	3.0	14	85	0	57	47	2	2	47	1.28
774824--774895	37	1.9	37	83	5	92	45	0	0	54	0.99
774851--774914	29	2.2	29	81	13	71	43	0	0	56	0.99
774847--774914	28	2.4	29	79	13	79	45	0	0	54	0.99
774996--775029	13	2.6	13	90	0	50	47	0	0	52	1.00
775200--775230	2	15.5	2	93	0	53	48	0	3	48	1.17
776097--776130	2	17.5	2	93	6	61	47	0	0	52	1.00
780855--780881	1	27.0	1	100	0	54	0	0	0	100	0.00
781426--781460	14	2.6	14	90	4	54	60	0	0	40	0.97
781457--781499	21	2.0	21	86	8	61	58	2	0	39	1.11
798320--798409	38	2.7	32	78	18	103	44	0	0	55	0.99
798393--798420	14	2.0	14	100	0	56	28	0	0	71	0.86
798334--798419	38	2.2	37	78	17	104	43	0	0	56	0.99
801277--801324	25	1.9	25	87	8	71	60	0	6	33	1.22
804321--804430	30	3.4	34	72	15	97	36	0	1	60	1.13
804975--805027	17	3.3	17	74	15	58	43	1	0	54	1.11
804983--805030	14	3.1	16	77	14	55	41	2	0	56	1.11
804983--805040	31	1.9	31	89	3	91	39	1	0	58	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
805036--805106	29	2.4	29	83	4	81	33	2	1	61	1.19
807797--807828	16	2.0	16	93	0	55	18	21	12	46	1.82
810813--810934	32	3.9	31	84	8	151	40	2	0	55	1.19
810822--810905	14	5.2	17	69	22	56	40	2	1	55	1.20
810815--810942	61	2.0	63	88	7	190	41	2	0	55	1.18
810823--810942	29	4.0	29	75	10	116	42	1	0	55	1.16
811035--811106	30	2.5	30	77	18	73	36	1	1	61	1.14
811319--811522	29	6.8	28	70	12	120	40	2	1	54	1.25
811335--811503	90	1.9	91	82	7	218	39	1	2	56	1.23
811337--811537	90	2.2	89	80	7	208	41	1	1	54	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25