genome.fa.s59.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold59
Parameters: 2 7 7 80 10 50 1000
Length:  3999109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   

This is table  18  of  25  ( 2913 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2615459--2615493	13	2.6	13	90	4	52	37	0	0	62	0.95
2615864--2615923	6	9.7	6	81	15	61	50	0	0	50	1.00
2616248--2616282	18	1.9	18	88	0	52	60	8	2	28	1.41
2617170--2617227	26	2.2	25	81	6	71	63	0	0	36	0.94
2617161--2617233	25	3.0	25	75	9	71	60	0	0	39	0.97
2617203--2617267	32	2.0	34	84	6	89	49	0	0	50	1.00
2617327--2617402	33	2.5	31	87	8	102	55	0	0	44	0.99
2617626--2617666	4	10.2	4	83	0	55	48	4	43	2	1.37
2617626--2617666	6	6.8	6	88	0	55	48	4	43	2	1.37
2626306--2626338	2	16.5	2	100	0	66	51	0	0	48	1.00
2630641--2630674	17	2.0	17	88	11	52	0	17	2	79	0.86
2636315--2636396	37	2.1	37	82	8	92	40	1	1	57	1.14
2636386--2636441	29	2.0	28	86	10	78	46	7	0	46	1.30
2636767--2636795	2	14.5	2	100	0	58	51	48	0	0	1.00
2645019--2645061	4	10.8	4	100	0	86	51	23	0	25	1.49
2650165--2650194	2	15.0	2	100	0	60	50	0	0	50	1.00
2651980--2652083	24	4.3	25	75	9	117	44	3	4	47	1.42
2652472--2652523	14	4.1	13	75	12	54	59	0	0	40	0.97
2652475--2652530	18	3.0	18	80	14	60	60	0	0	39	0.97
2653152--2653196	23	2.0	22	83	8	56	37	0	0	62	0.96
2655011--2655063	15	3.5	15	89	2	70	45	0	7	47	1.31
2655011--2655063	26	2.1	25	89	3	79	45	0	7	47	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2657379--2657422	19	2.3	19	92	0	70	72	0	2	25	0.96
2657445--2657482	20	1.9	20	89	10	60	60	0	0	39	0.97
2657380--2657486	26	4.1	27	75	12	89	63	0	0	35	1.01
2662491--2662535	21	2.3	21	85	11	60	57	0	8	33	1.30
2663815--2663844	15	1.9	16	93	6	53	53	0	0	46	1.00
2663815--2663845	16	1.9	16	93	0	53	54	0	0	45	0.99
2667912--2667948	2	18.5	2	94	0	65	48	0	0	51	1.00
2669138--2669172	17	2.1	17	88	0	52	37	0	2	60	1.12
2674477--2674593	34	3.5	33	87	5	148	41	27	5	24	1.78
2678849--2678945	34	2.9	34	83	6	124	40	27	8	23	1.83
2679022--2679096	34	2.2	34	88	4	107	24	6	30	38	1.81
2681163--2681200	17	2.2	17	86	9	51	47	0	0	52	1.00
2681168--2681200	17	2.1	17	88	11	52	45	0	0	54	0.99
2681489--2681528	21	1.9	21	89	0	62	62	0	0	37	0.95
2681822--2681870	15	3.5	13	82	17	62	30	6	0	63	1.19
2682053--2682098	23	2.0	23	95	0	83	26	2	17	54	1.54
2683087--2683131	13	3.5	13	84	9	56	37	0	0	62	0.96
2683878--2683924	18	2.6	18	80	16	53	36	0	0	63	0.94
2684007--2684036	8	3.8	8	90	0	51	13	0	0	86	0.57
2688239--2688287	23	2.1	23	85	7	64	32	0	2	65	1.04
2688730--2688764	16	2.3	15	90	5	52	57	0	0	42	0.99
2689125--2689158	16	2.1	17	88	5	52	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2689116--2689160	24	1.9	23	86	4	63	44	0	0	55	0.99
2696620--2696737	15	8.3	15	72	12	61	47	4	6	41	1.49
2696637--2696737	14	7.2	14	75	12	64	48	4	6	39	1.52
2696635--2696733	43	2.4	41	77	6	110	47	5	7	40	1.53
2696635--2696737	41	2.5	42	79	6	120	48	4	6	39	1.51
2699971--2699995	2	12.5	2	100	0	50	48	0	0	52	1.00
2700921--2700971	15	3.3	15	79	15	59	47	0	1	50	1.12
2702150--2702175	10	2.6	10	100	0	52	42	11	26	19	1.85
2706011--2706055	23	2.0	23	86	8	65	66	2	0	31	1.04
2707055--2707152	2	52.0	2	68	15	57	42	1	0	56	1.06
2707055--2707152	33	3.1	33	78	14	107	42	1	0	56	1.06
2707057--2707152	41	2.3	43	85	7	126	42	1	0	56	1.06
2707105--2707152	13	3.8	13	81	18	57	41	0	0	58	0.98
2707227--2707290	29	2.1	31	85	5	87	35	0	3	60	1.12
2708089--2708132	20	2.2	20	83	0	52	40	0	0	59	0.98
2708104--2708171	20	3.5	20	70	22	63	42	4	0	52	1.21
2709893--2709960	31	2.2	30	80	12	75	44	0	0	55	0.99
2710328--2710397	21	3.3	21	75	13	72	42	0	0	57	0.99
2710338--2710397	16	4.1	16	69	20	58	41	0	0	58	0.98
2710328--2710387	27	2.2	28	82	8	79	43	0	0	56	0.99
2710338--2710399	21	2.9	21	80	2	79	43	0	0	56	0.99
2710428--2710478	16	3.3	15	76	13	50	33	1	5	58	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2711295--2711325	2	15.5	2	100	0	62	51	0	0	48	1.00
2711537--2711564	2	14.0	2	100	0	56	50	0	0	50	1.00
2714471--2714505	18	2.0	18	88	5	54	68	14	14	2	1.32
2716401--2716430	2	15.0	2	92	0	51	46	0	3	50	1.18
2716628--2716725	18	5.2	18	69	19	56	42	1	10	45	1.44
2716841--2716896	18	2.9	18	78	7	58	48	5	1	44	1.36
2718064--2718129	26	2.4	27	82	7	71	37	1	0	60	1.06
2718072--2718129	24	2.3	26	85	8	77	39	1	0	58	1.08
2718072--2718129	26	2.4	24	85	8	73	39	1	0	58	1.08
2718659--2718715	18	2.9	19	80	10	62	47	1	0	50	1.11
2718672--2718726	21	2.7	21	78	10	53	41	1	0	56	1.10
2719122--2719169	15	3.3	15	85	8	55	31	2	2	64	1.16
2723439--2723485	25	1.9	24	83	12	60	25	0	2	72	0.96
2723628--2723663	18	1.9	18	88	5	54	58	0	8	33	1.28
2723755--2723815	18	3.4	18	76	14	72	37	1	0	60	1.07
2723755--2723816	11	5.1	12	74	14	56	37	1	0	61	1.06
2724308--2724350	3	14.3	3	100	0	86	67	0	0	32	0.91
2727988--2728030	19	2.3	18	80	8	50	30	4	9	55	1.52
2733859--2733901	20	2.2	20	100	0	86	48	13	9	27	1.73
2735840--2735897	31	1.9	30	86	10	82	65	0	0	34	0.93
2735930--2735972	17	2.7	15	76	13	50	67	2	4	25	1.22
2735885--2735972	43	2.1	42	83	10	108	64	2	3	29	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2736070--2736138	22	3.0	24	79	12	74	50	0	0	49	1.00
2736070--2736126	23	2.5	24	81	16	68	49	0	0	50	1.00
2736447--2736476	2	15.0	2	100	0	60	50	0	0	50	1.00
2751298--2751388	47	1.9	47	88	0	137	39	17	8	34	1.81
2760735--2760774	21	1.9	21	90	10	64	60	0	0	40	0.97
2762367--2762411	22	2.0	22	83	8	56	44	6	0	48	1.29
2768842--2768882	18	2.4	17	83	4	55	41	0	0	58	0.98
2772285--2772318	13	2.6	13	85	0	50	35	2	0	61	1.11
2772283--2772337	19	2.8	20	81	10	69	38	3	0	58	1.16
2772300--2772338	18	2.2	18	86	9	53	43	5	0	51	1.24
2772314--2772368	26	2.1	26	83	6	67	56	5	0	38	1.23
2772594--2772642	5	10.2	5	87	12	68	63	0	0	36	0.95
2772592--2772682	32	2.8	31	79	11	94	63	2	0	34	1.06
2773702--2773798	49	2.0	47	80	11	108	50	2	1	46	1.20
2774015--2774078	33	2.0	32	82	14	78	6	40	0	53	1.26
2774014--2774078	32	2.0	34	85	11	91	6	40	0	53	1.26
2774742--2775037	118	2.5	120	81	5	334	27	20	16	35	1.95
2775838--2775876	11	3.5	11	86	6	53	43	0	0	56	0.99
2779583--2779707	34	3.7	34	80	6	146	27	4	24	43	1.74
2779566--2779715	68	2.2	68	87	7	225	23	4	27	44	1.73
2782698--2782752	19	2.9	19	91	0	83	34	16	18	30	1.93
2784313--2784359	22	2.1	22	92	0	76	12	10	27	48	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2784336--2784594	34	7.4	34	81	7	277	23	6	27	42	1.80
2784330--2784519	68	2.8	68	91	3	310	22	7	27	42	1.80
2784474--2784561	42	2.1	42	97	0	167	19	5	32	42	1.75
2784447--2784594	76	1.9	76	87	2	217	21	6	29	43	1.76
2784774--2784834	19	3.3	19	83	2	79	36	13	16	34	1.87
2785091--2785151	19	3.2	20	84	15	78	27	21	14	36	1.93
2785110--2785160	19	2.7	19	87	3	59	27	21	17	33	1.96
2785197--2785287	34	2.7	34	80	0	119	43	25	7	23	1.80
2785263--2785307	22	2.0	22	91	0	72	48	26	8	15	1.74
2787826--2788066	117	2.1	117	95	1	430	34	21	12	31	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25