Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold59
Parameters: 2 7 7 80 10 50 1000
Length:  3999109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   

This is table  25  of  25  ( 2913 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3969453--3969478
1
26.0
1
100
0
52
100
0
0
0
0.00
3973403--3973449
2
23.5
2
100
0
94
51
0
0
48
1.00
3974072--3974101
14
2.1
15
93
6
53
40
0
6
53
1.27
3974095--3974127
11
3.1
11
86
8
50
45
0
0
54
0.99
3974096--3974279
16
11.8
16
63
16
57
48
0
1
50
1.10
3974104--3974206
48
2.2
45
79
10
109
50
0
2
46
1.16
3974209--3974260
24
2.2
23
90
10
79
38
0
0
61
0.96
3974213--3974281
32
2.2
31
84
5
86
46
0
0
53
1.00
3974267--3974317
19
2.6
19
79
11
59
68
0
0
31
0.90
3974301--3974356
21
2.7
21
76
15
53
57
3
0
39
1.16
3974308--3974363
22
2.5
22
75
13
62
51
3
0
44
1.18
3977159--3977190
2
16.0
2
100
0
64
50
0
0
50
1.00
3977280--3977306
14
1.9
14
100
0
54
74
3
0
22
0.98
3977622--3977653
13
2.3
15
89
10
50
53
0
0
46
1.00
3978696--3978727
15
2.1
15
100
0
64
37
0
0
62
0.95
3978737--3978771
17
2.0
18
88
5
54
51
5
0
42
1.25
3979159--3979191
8
4.2
8
84
7
50
84
0
0
15
0.61
3979159--3979190
15
2.1
15
94
0
55
84
0
0
15
0.63
3979091--3979402
160
2.0
159
81
6
377
49
5
6
39
1.50
3981020--3981306
139
2.1
139
83
0
369
28
15
8
48
1.73
3982381--3982422
20
2.1
20
90
0
66
14
33
7
45
1.72
3983025--3983102
15
5.3
15
68
10
54
42
2
3
51
1.34
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3984238--3984299
33
1.9
31
87
12
90
48
8
0
43
1.32
3984880--3984904
2
12.5
2
100
0
50
52
0
0
48
1.00
3986095--3986130
2
18.0
2
94
0
63
47
0
2
50
1.15
3988450--3988517
19
3.9
18
76
23
83
35
11
16
36
1.85
3988452--3988514
32
2.0
32
96
0
117
34
12
17
34
1.88
3988471--3988495
13
1.9
13
100
0
50
36
16
16
32
1.90
3993431--3993485
28
2.0
28
96
0
101
43
18
7
30
1.77
3994154--3994231
27
2.9
27
70
21
72
30
10
6
52
1.60
3994822--3994859
3
12.7
3
94
0
67
68
2
0
28
1.03
3997690--3997729
3
13.7
3
89
5
64
30
0
2
67
1.04
3998319--3998401
27
3.1
27
70
18
82
55
6
9
28
1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25

The End!