genome.fa.s59.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold59
Parameters: 2 7 7 80 10 50 1000
Length:  3999109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   

This is table  2  of  25  ( 2913 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
263048--263090	2	22.0	2	86	13	63	51	2	0	46	1.13
265142--265182	21	2.0	21	85	9	57	43	4	7	43	1.53
266343--266368	3	8.7	3	100	0	52	69	0	0	30	0.89
266652--266723	29	2.4	32	74	25	86	55	6	2	34	1.41
267476--267556	21	3.8	21	66	16	58	58	0	1	40	1.06
267665--267748	36	2.2	38	85	10	109	55	0	2	41	1.12
268428--268549	60	2.0	62	83	10	155	53	3	0	43	1.17
268833--268863	16	1.9	16	93	0	53	48	0	3	48	1.17
268983--269046	24	2.8	22	80	17	69	59	1	0	39	1.07
269467--269512	21	2.2	20	84	3	56	43	0	0	56	0.99
269486--269564	21	3.7	21	75	6	61	50	0	1	48	1.08
270097--270133	14	2.5	14	91	8	56	54	0	0	45	1.00
270472--270504	16	2.1	16	94	0	57	54	0	3	42	1.15
274391--274426	14	2.6	14	95	0	63	22	19	36	22	1.95
278902--278995	48	2.0	48	91	0	152	36	18	13	31	1.90
279583--279643	30	2.0	30	87	6	88	40	0	0	59	0.98
282302--282343	18	2.3	19	80	8	52	61	2	0	35	1.09
284263--284289	2	13.5	2	100	0	54	48	0	0	51	1.00
284949--284991	2	21.5	2	100	0	86	48	0	0	51	1.00
285145--285177	15	2.2	16	89	10	52	51	0	6	42	1.26
285403--285443	3	13.0	3	90	10	64	34	0	2	63	1.08
286559--286596	18	2.1	19	85	5	51	36	13	0	50	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
289312--289449	49	2.8	45	74	18	125	43	3	2	50	1.31
289312--289449	50	2.8	46	75	17	136	43	3	2	50	1.31
289988--290027	14	2.9	15	85	10	50	45	0	0	55	0.99
298770--298821	3	17.3	3	100	0	104	34	0	0	65	0.93
300085--300115	5	6.2	5	92	0	53	64	0	0	35	0.94
301108--301139	3	10.7	3	100	0	64	65	0	0	34	0.93
304380--304418	19	2.1	19	85	9	53	61	5	2	30	1.31
305163--305196	2	17.0	2	100	0	68	50	0	0	50	1.00
307341--307373	4	8.0	4	93	6	57	24	48	0	27	1.51
311177--311208	15	2.1	15	100	0	64	15	25	18	40	1.90
313432--313459	2	14.0	2	100	0	56	50	0	0	50	1.00
313898--313938	5	8.2	5	88	0	55	17	41	19	21	1.90
316670--316712	21	2.0	21	100	0	86	18	23	13	44	1.86
317250--317283	16	2.1	17	94	5	61	41	5	26	26	1.78
318947--318984	19	2.0	19	100	0	76	21	15	15	47	1.82
320054--320082	3	9.7	3	100	0	58	34	0	0	65	0.93
324002--324042	18	2.3	19	79	8	50	56	9	12	21	1.65
324270--324313	22	2.0	22	86	0	61	61	0	0	38	0.96
325781--325805	2	12.5	2	100	0	50	0	52	0	48	1.00
331481--331522	3	14.3	3	95	5	77	69	0	0	30	0.89
335492--335517	4	6.5	4	100	0	52	76	0	0	23	0.78
340149--340188	6	6.7	6	91	0	62	55	2	0	42	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
340279--340347	35	2.0	35	82	5	86	52	0	0	47	1.00
340318--340418	15	6.4	15	71	27	68	52	0	0	47	1.00
340375--340414	5	8.2	5	84	15	57	57	0	0	42	0.98
340324--340414	18	5.6	17	70	21	72	53	0	0	46	1.00
340365--340413	13	3.5	13	79	17	53	53	0	0	46	1.00
348398--349471	216	5.0	216	97	1	2042	38	15	14	30	1.88
348398--349471	427	2.5	427	98	0	2067	38	15	14	30	1.88
352246--352351	31	3.1	34	79	14	94	43	0	0	56	0.99
352267--352306	20	2.0	20	85	9	55	50	0	0	50	1.00
352292--352388	21	5.2	20	70	23	70	43	0	0	56	0.99
352310--352389	22	3.8	20	74	12	70	42	0	0	57	0.98
356519--356564	20	2.3	20	85	10	60	39	0	2	58	1.10
356573--356618	24	2.0	24	87	12	69	52	0	0	47	1.00
356541--356624	24	3.4	24	73	22	68	46	0	1	52	1.08
356670--356703	17	1.9	18	88	5	52	61	0	0	38	0.96
373039--373064	2	13.0	2	100	0	52	50	0	0	50	1.00
374026--374050	2	12.5	2	100	0	50	52	0	0	48	1.00
375272--375308	2	18.5	2	100	0	74	51	48	0	0	1.00
376369--376403	6	5.8	6	93	0	61	37	34	28	0	1.58
378096--378126	2	15.5	2	100	0	62	51	0	0	48	1.00
379428--379465	2	19.0	2	100	0	76	50	0	0	50	1.00
380276--380319	18	2.4	19	80	7	54	45	0	2	52	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
380310--380348	15	2.4	17	87	8	55	53	5	2	38	1.37
384311--384346	18	2.0	18	94	0	63	44	8	16	30	1.77
387654--387687	2	17.0	2	100	0	68	50	0	0	50	1.00
395271--395381	56	2.0	56	87	3	161	28	9	15	46	1.76
397300--397335	2	18.0	2	100	0	72	0	50	0	50	1.00
397379--397524	72	2.0	72	93	2	249	35	12	25	26	1.91
409481--409548	20	3.5	20	72	22	63	29	1	0	69	0.98
409621--409645	2	12.5	2	100	0	50	52	0	0	48	1.00
413316--413376	32	1.9	32	93	0	104	19	18	14	47	1.82
415175--415223	2	24.5	2	82	0	53	48	10	0	40	1.37
417164--417204	2	20.5	2	100	0	82	48	0	0	51	1.00
418936--418986	17	3.1	16	80	8	57	62	0	0	37	0.95
420171--420212	19	2.2	19	87	8	59	38	4	14	42	1.66
420245--420274	3	10.0	3	100	0	60	66	0	0	33	0.92
427592--427626	2	17.5	2	100	0	70	48	0	0	51	1.00
435537--435578	11	3.7	11	90	3	57	47	4	0	47	1.23
435765--435826	30	2.1	30	87	6	90	33	0	4	61	1.17
438909--438945	13	2.8	13	83	0	56	56	0	0	43	0.99
438890--438969	26	3.1	25	82	12	90	57	0	0	42	0.98
439397--439437	18	2.2	19	91	4	66	43	0	0	56	0.99
440437--440469	13	2.4	14	90	5	50	45	0	0	54	0.99
441960--441993	15	2.3	15	90	10	52	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
442321--442349	8	3.8	8	90	9	51	89	0	10	0	0.48
443882--443944	23	2.8	23	85	2	74	46	0	0	53	1.00
444388--444427	22	1.9	22	85	10	57	42	2	0	55	1.13
446201--446245	24	1.9	23	81	4	54	53	8	8	28	1.62
450799--450857	25	2.4	25	76	18	61	47	3	1	47	1.29
451761--451787	2	13.5	2	100	0	54	51	0	0	48	1.00
452721--452745	2	12.5	2	100	0	50	48	0	0	52	1.00
459210--459253	20	2.1	21	87	8	63	61	4	6	27	1.41
461310--461339	14	2.1	15	93	6	53	6	13	0	80	0.91
462230--462258	14	2.0	15	93	6	51	34	0	3	62	1.12
463259--463293	17	2.1	17	88	0	52	11	8	20	60	1.57
467307--467339	3	11.0	3	100	0	66	33	0	0	66	0.92
468467--468493	2	13.5	2	100	0	54	51	0	0	48	1.00
468807--468848	21	2.0	21	86	13	59	45	0	2	52	1.13
474647--474684	3	12.7	3	100	0	76	34	0	0	65	0.93
475423--475452	2	15.5	2	93	6	53	53	0	46	0	1.00
480749--480964	34	6.4	34	85	1	265	25	7	25	40	1.83
480749--480966	67	3.2	67	86	1	292	25	7	26	40	1.83
481923--481982	12	4.9	12	80	10	59	31	0	0	68	0.90
481912--481978	23	2.8	24	82	10	68	34	0	0	65	0.93
481933--481986	13	3.8	13	77	15	54	29	0	0	70	0.88
485777--485826	16	3.1	16	78	21	68	58	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
485763--485839	32	2.5	30	85	8	109	59	0	0	40	0.97
485771--485821	25	2.0	25	88	7	77	60	0	0	39	0.97
485773--485836	32	2.0	32	93	0	110	59	0	0	40	0.97
485786--485841	16	3.5	16	79	18	62	55	0	0	44	0.99
488972--489483	176	2.9	175	88	4	760	24	10	20	43	1.83
500120--500159	19	2.1	19	100	0	80	25	17	15	42	1.88
501504--501608	55	1.9	55	92	0	174	30	11	15	42	1.82
502011--502071	12	5.1	11	77	13	50	70	3	0	26	1.02
502014--502071	24	2.4	24	82	5	73	68	3	0	27	1.05
502776--502800	4	6.2	4	100	0	50	24	0	48	28	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25