genome.fa.s59.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold59
Parameters: 2 7 7 80 10 50 1000
Length:  3999109

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   

This is table  3  of  25  ( 2913 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
510431--510476	13	3.5	13	76	23	51	43	0	0	56	0.99
510436--510489	28	1.9	28	81	7	65	40	0	3	55	1.17
510469--510521	27	2.0	27	85	7	72	58	0	3	37	1.16
510487--510525	19	2.1	18	85	4	51	64	0	0	35	0.94
511691--511724	18	1.9	17	88	5	50	52	0	0	47	1.00
511698--511785	33	2.8	31	74	14	81	42	0	1	56	1.06
511775--511821	17	2.8	17	80	3	60	36	2	0	61	1.08
513117--513189	31	2.4	31	82	13	82	43	0	1	54	1.08
513475--513518	3	14.7	3	100	0	88	68	0	0	31	0.90
523821--523852	2	16.0	2	100	0	64	50	0	0	50	1.00
527159--527198	18	2.2	19	86	4	55	85	2	10	2	0.80
537140--537189	19	2.6	19	81	12	57	56	0	2	42	1.11
543754--543783	9	3.3	9	100	0	60	36	33	30	0	1.58
544648--544698	21	2.5	20	81	9	50	33	1	5	58	1.33
544721--544782	17	3.7	17	72	25	60	40	0	0	59	0.97
544708--544749	20	2.1	20	86	0	57	35	0	0	64	0.94
546822--546860	21	1.9	21	89	5	62	43	7	7	41	1.62
554780--554813	2	17.0	2	100	0	68	50	0	0	50	1.00
556783--556817	11	2.9	12	91	8	54	48	0	0	51	1.00
556785--556844	31	2.0	30	87	9	86	50	1	0	48	1.11
556983--557032	23	2.2	23	88	0	73	38	2	0	60	1.09
559254--559293	17	2.4	17	87	4	64	40	12	17	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
560411--560444	16	2.2	16	89	5	52	58	0	0	41	0.98
565531--565574	22	2.0	22	90	0	70	22	40	18	18	1.91
565758--565819	31	2.0	31	84	6	81	46	0	0	53	1.00
565770--565832	23	2.7	23	80	12	65	46	0	0	53	1.00
569653--569691	21	2.0	18	85	14	51	51	0	0	48	1.00
571384--571432	25	1.9	26	91	4	82	42	0	4	53	1.20
571373--571437	32	2.1	31	82	8	78	40	0	3	56	1.15
571514--571566	22	2.6	20	75	13	54	56	0	1	41	1.10
571513--571611	31	3.2	29	85	9	83	53	1	1	44	1.14
571539--571611	11	7.1	10	74	19	62	54	1	0	43	1.08
571543--571592	20	2.3	23	80	16	63	54	2	0	44	1.11
571532--571611	31	2.5	31	90	6	117	53	1	0	45	1.08
571788--571838	25	2.2	24	83	16	63	64	1	0	33	1.05
571826--571924	21	4.5	22	72	15	71	60	2	0	37	1.08
571874--571921	19	2.5	19	82	3	51	56	0	0	43	0.99
579716--579742	1	27.0	1	100	0	54	0	0	100	0	0.00
580226--580254	2	14.5	2	100	0	58	51	0	48	0	1.00
586870--586944	27	2.9	26	84	9	91	49	0	0	50	1.00
586891--586934	21	2.0	23	82	8	56	52	0	0	47	1.00
586872--586992	26	4.4	25	78	16	91	47	0	0	52	1.06
586885--586964	24	3.3	25	79	10	85	50	0	0	50	1.00
586954--587015	19	3.0	20	73	17	65	53	1	0	45	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
588177--588203	2	13.5	2	100	0	54	51	0	0	48	1.00
588519--588590	30	2.4	30	88	4	101	29	6	29	34	1.83
588944--589002	25	2.4	25	88	5	86	44	0	0	55	0.99
588956--589013	25	2.4	24	80	11	73	39	1	0	58	1.08
590627--590655	14	2.0	15	93	6	51	62	0	0	37	0.96
591139--591163	13	1.9	13	100	0	50	56	4	0	40	1.18
591092--591168	38	2.0	38	82	5	93	49	3	2	44	1.34
596680--596722	20	2.2	19	83	4	50	65	0	2	32	1.06
596705--596815	8	14.1	8	67	23	58	59	0	0	38	1.10
596700--596815	32	3.7	32	75	14	100	58	0	1	38	1.14
596762--596827	13	4.6	14	73	19	57	69	1	0	28	0.97
596756--596827	29	2.5	29	84	10	87	68	1	0	30	0.99
596765--596827	21	3.0	21	78	21	69	71	1	0	26	0.95
597080--597128	11	4.5	11	80	10	55	34	0	0	65	0.93
597076--597116	17	2.6	17	77	14	52	26	0	0	73	0.84
597170--597228	22	2.7	23	76	10	61	47	0	1	50	1.11
597343--597388	6	8.5	6	80	20	57	30	0	0	69	0.89
597308--597372	17	3.8	17	76	11	62	44	0	0	55	0.99
597343--597385	11	4.1	11	88	11	56	30	0	0	69	0.88
598448--598484	2	18.5	2	100	0	74	48	0	0	51	1.00
599248--599294	24	2.0	24	86	0	67	38	0	2	59	1.09
599253--599308	24	2.3	24	77	22	64	32	0	3	64	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
601234--601272	18	2.1	18	85	4	51	46	5	12	35	1.65
602458--602508	23	2.3	23	80	10	61	47	3	0	49	1.20
602640--602696	16	3.4	16	74	11	51	40	0	0	59	0.97
602966--603041	23	3.3	25	69	23	69	56	1	0	42	1.07
602960--603054	15	6.3	15	74	17	81	52	1	0	46	1.07
602981--603034	5	10.8	5	74	21	51	59	1	0	38	1.08
602960--603054	30	3.2	28	78	11	100	52	1	0	46	1.07
603038--603119	40	2.0	40	84	9	105	37	0	0	62	0.96
602969--603087	15	7.9	15	71	18	61	50	0	0	48	1.06
603022--603141	45	2.6	46	75	18	117	41	0	0	58	0.98
603064--603136	37	2.0	38	81	5	87	38	0	0	61	0.96
603288--603320	1	33.0	1	93	0	57	0	0	3	96	0.20
604411--604448	18	2.1	19	85	5	51	36	0	0	63	0.95
607269--607303	3	11.7	3	93	0	61	62	2	0	34	1.10
611263--611335	18	3.6	20	74	22	64	39	0	1	58	1.06
612333--612384	18	2.9	18	79	20	56	51	0	1	46	1.12
613047--613110	29	2.2	29	82	0	74	40	0	0	59	0.97
613256--613380	63	2.0	65	83	3	164	50	12	4	33	1.58
613669--613701	4	8.8	4	87	12	52	24	0	0	75	0.80
614026--614085	23	2.7	22	80	10	61	43	0	0	56	0.99
614032--614085	22	2.4	22	84	9	65	42	0	0	57	0.98
614872--614968	5	18.8	5	69	13	54	56	2	0	41	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
614876--614968	21	3.7	26	73	15	79	56	2	0	40	1.11
615305--615346	21	1.9	23	85	9	61	69	2	0	28	1.01
616247--616304	23	2.7	21	80	17	66	44	0	1	53	1.10
616312--616382	23	3.1	23	75	22	69	56	1	0	42	1.08
616313--616379	12	5.8	12	67	13	50	55	1	0	43	1.09
616632--616666	14	2.6	14	95	4	63	42	0	0	57	0.99
616640--616687	14	3.3	14	85	5	60	35	4	0	60	1.16
617113--617167	20	2.7	20	74	2	56	45	1	0	52	1.11
619948--619994	17	2.8	17	80	3	60	42	0	0	57	0.98
620009--620056	25	1.9	25	82	0	60	52	2	4	41	1.32
620113--620159	23	2.0	23	88	8	69	59	0	2	38	1.09
620284--620374	20	4.8	20	69	17	68	46	0	0	53	1.00
620295--620355	11	5.8	10	74	16	52	49	0	0	50	1.00
620280--620388	27	3.8	26	73	20	76	44	0	0	55	0.99
620643--620677	5	7.0	5	86	0	52	40	0	2	57	1.14
620658--620713	17	3.4	16	73	14	51	44	0	0	55	0.99
625926--625961	2	18.0	2	88	0	54	52	44	0	2	1.15
627475--627503	8	3.8	8	95	4	51	0	6	0	93	0.36
628071--628106	17	2.2	17	90	5	56	58	0	0	41	0.98
628084--628129	14	3.1	16	75	15	53	50	0	4	45	1.21
628358--628407	13	3.8	14	76	12	52	54	0	0	46	1.00
628358--628407	26	1.9	26	84	8	66	54	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
629724--629770	22	2.1	22	84	7	60	38	2	0	59	1.09
631602--631645	22	2.0	22	81	0	52	59	0	2	38	1.10
631762--631802	22	1.9	21	85	5	55	26	2	2	68	1.15
637410--637435	7	3.7	7	100	0	52	11	0	0	88	0.52
637491--637526	16	2.1	17	90	10	56	58	0	0	41	0.98
637501--637566	15	4.4	15	79	7	64	51	3	0	45	1.16
643389--643422	16	2.1	17	89	10	54	32	0	0	67	0.91
643384--643424	21	2.1	20	86	13	59	31	0	0	68	0.90
643384--643425	19	2.1	21	86	8	61	30	0	0	69	0.89
647192--647258	11	6.4	11	75	14	61	62	0	0	37	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25