genome.fa.s65.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold65
Parameters: 2 7 7 80 10 50 1000
Length:  3097370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  10  of  17  ( 1956 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2001414--2001466	21	2.5	21	84	0	70	37	22	3	35	1.72
2004798--2004842	21	2.1	22	84	12	58	40	20	0	40	1.52
2006685--2006722	18	2.0	19	90	10	60	28	0	2	68	1.03
2007169--2007235	11	6.0	11	73	16	57	31	0	7	61	1.24
2007693--2007757	29	2.2	30	81	13	82	55	0	1	43	1.09
2019816--2019866	17	2.9	18	78	21	63	49	0	5	45	1.26
2020444--2020484	21	2.0	21	95	0	73	51	2	4	41	1.36
2020476--2020537	20	3.2	20	73	15	67	50	1	0	48	1.10
2020482--2020537	18	3.0	18	77	10	67	50	1	0	48	1.11
2022853--2022888	2	18.0	2	100	0	72	50	0	50	0	1.00
2025852--2025927	7	10.9	7	76	8	66	48	2	1	47	1.24
2029992--2030034	21	2.1	20	82	4	50	41	0	2	55	1.12
2033637--2033675	2	19.5	2	100	0	78	48	0	0	51	1.00
2034361--2034403	21	2.0	21	86	0	59	58	6	0	34	1.25
2036753--2036788	2	18.0	2	100	0	72	50	0	0	50	1.00
2037344--2037382	2	19.5	2	100	0	78	48	0	0	51	1.00
2038068--2038110	21	2.0	21	86	0	59	58	6	0	34	1.25
2040183--2040294	34	3.4	33	72	22	101	36	0	0	63	0.95
2040202--2040257	16	3.6	16	79	16	55	42	0	0	57	0.99
2040212--2040267	26	2.2	25	81	9	69	41	0	0	58	0.98
2040183--2040294	12	9.2	11	73	18	73	36	0	0	63	0.95
2040238--2040291	23	2.3	24	85	14	78	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2043496--2043546	22	2.3	23	82	3	59	33	1	1	62	1.17
2045704--2045738	2	17.5	2	100	0	70	48	0	0	51	1.00
2047143--2047171	13	2.3	13	94	5	51	24	0	0	75	0.80
2047501--2047562	20	3.1	21	73	13	51	66	0	3	30	1.08
2048024--2048050	13	2.1	13	100	0	54	22	0	14	62	1.31
2048403--2048445	15	2.6	16	82	13	52	53	2	0	44	1.13
2048403--2048447	16	2.7	17	78	21	51	53	2	0	44	1.13
2048673--2048735	26	2.4	26	86	2	81	47	0	0	52	1.00
2054562--2054588	13	2.1	13	100	0	54	77	0	0	22	0.76
2054833--2054878	16	3.1	16	76	23	64	47	0	0	52	1.00
2054834--2054898	28	2.3	28	81	5	69	47	0	0	52	1.00
2054926--2054970	22	2.0	23	86	4	65	53	2	0	44	1.13
2055050--2055125	32	2.3	34	84	6	102	55	0	1	43	1.08
2055078--2055124	16	2.8	17	78	12	53	53	0	0	46	1.00
2055141--2055168	2	14.0	2	100	0	56	50	0	0	50	1.00
2059956--2060047	20	4.9	19	69	18	59	40	0	2	57	1.11
2061452--2061491	20	2.0	20	100	0	80	30	20	0	50	1.49
2064556--2064646	45	2.0	44	81	12	105	59	0	0	40	0.97
2064558--2064643	16	5.6	16	72	14	65	62	0	0	37	0.95
2064589--2064646	23	2.6	22	77	17	66	56	0	0	43	0.99
2064589--2064653	23	3.0	22	75	20	64	55	0	0	44	0.99
2064906--2064981	24	3.3	22	69	28	52	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2064946--2065013	16	4.1	17	72	12	61	50	1	0	48	1.10
2064948--2065015	34	2.0	33	83	8	84	47	1	0	51	1.09
2064998--2065047	23	2.2	23	86	10	68	36	0	0	64	0.94
2064924--2065042	50	2.4	50	77	16	122	44	0	0	54	1.05
2065961--2066019	20	3.1	20	72	20	63	54	0	0	45	0.99
2066390--2066426	18	2.0	20	89	10	60	56	0	2	40	1.13
2066425--2066501	31	2.5	32	76	21	83	45	0	0	54	0.99
2066489--2066521	16	2.0	17	94	5	59	57	0	0	42	0.98
2066646--2066734	27	3.3	26	78	7	79	43	0	1	55	1.07
2068247--2068296	25	2.0	26	88	11	77	68	0	0	32	0.90
2068671--2068712	21	2.0	22	90	4	68	42	0	0	57	0.99
2070673--2070810	13	10.2	13	65	14	57	55	0	1	42	1.08
2070670--2070759	41	2.2	42	78	6	103	61	0	2	36	1.09
2070728--2070790	21	3.0	21	80	15	60	60	0	0	39	0.97
2071161--2071196	3	12.0	3	88	11	56	30	0	0	69	0.89
2071432--2071495	29	2.2	29	80	0	74	57	3	0	39	1.14
2072956--2073000	19	2.5	18	89	7	65	62	0	0	37	0.96
2072953--2073000	17	2.7	18	81	12	64	60	0	0	39	0.97
2073981--2074041	22	2.6	24	79	5	72	60	4	0	34	1.18
2073995--2074038	24	1.9	22	86	9	61	61	2	0	36	1.09
2074930--2074988	8	7.2	8	76	17	59	62	0	1	35	1.05
2074930--2074986	26	2.2	26	81	9	64	63	0	1	35	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2075049--2075097	24	2.1	23	85	11	64	65	2	2	30	1.15
2076029--2076084	19	2.9	19	79	10	78	32	3	1	62	1.23
2076029--2076107	38	2.2	37	81	6	90	37	2	3	55	1.31
2076735--2076761	14	1.9	14	100	0	54	59	0	3	37	1.15
2077377--2077429	20	2.6	21	82	8	74	52	0	0	47	1.00
2078138--2078171	2	17.0	2	93	0	59	52	0	0	47	1.00
2084808--2084837	15	2.0	15	100	0	60	40	13	13	33	1.83
2085053--2085110	21	2.8	20	77	12	62	58	0	5	36	1.20
2085053--2085104	23	2.3	23	80	12	63	59	0	5	34	1.21
2085737--2085770	17	2.0	17	88	0	50	38	0	2	58	1.13
2086086--2086115	6	5.0	6	100	0	60	33	16	33	16	1.92
2087998--2088052	16	3.3	16	75	14	58	40	1	0	58	1.09
2088097--2088139	20	2.2	19	83	4	50	51	0	4	44	1.22
2088140--2088199	24	2.5	24	78	8	68	55	0	3	41	1.16
2088462--2088501	20	2.1	19	86	9	55	35	0	0	65	0.93
2088564--2088629	13	4.6	15	72	25	54	60	0	0	39	0.97
2089554--2089591	20	1.9	20	89	10	60	55	0	0	44	0.99
2089553--2089625	28	2.7	26	78	21	80	53	0	0	46	1.00
2092045--2092100	24	2.2	25	78	15	62	41	0	3	55	1.17
2095914--2095974	9	6.9	9	76	10	54	8	6	0	85	0.75
2095916--2095975	16	3.8	16	76	12	61	8	6	0	85	0.76
2095923--2095972	17	2.9	17	78	3	64	10	6	0	84	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2095887--2095972	35	2.5	35	81	5	93	11	8	0	80	0.91
2096944--2097082	41	3.4	41	94	0	251	30	16	28	23	1.96
2106318--2106364	14	3.3	14	85	5	67	36	12	17	34	1.87
2106327--2106372	14	3.2	14	82	14	58	28	8	21	41	1.83
2109494--2109536	19	2.2	20	83	4	52	37	6	25	30	1.82
2110473--2110557	20	4.2	20	68	14	66	56	1	0	42	1.07
2110470--2110557	29	2.8	32	70	13	76	55	2	0	42	1.12
2110481--2110532	18	2.8	18	83	13	61	61	1	0	36	1.07
2114169--2114247	34	2.3	35	80	2	97	30	1	29	39	1.65
2117028--2117918	454	2.0	454	97	0	1701	43	14	20	21	1.88
2120750--2120838	28	3.2	27	76	10	90	65	0	0	34	0.93
2120763--2120838	19	4.1	18	77	17	75	64	0	0	35	0.94
2120764--2120877	38	3.1	39	70	26	104	60	1	0	37	1.07
2120794--2120869	33	2.3	32	84	8	91	57	2	0	39	1.12
2120791--2120887	17	5.6	16	66	25	54	58	2	0	39	1.10
2120764--2120927	17	9.3	18	67	19	53	58	1	0	39	1.13
2125190--2125222	6	5.5	6	96	0	57	33	3	12	51	1.54
2125608--2125683	24	3.3	24	70	7	68	50	0	1	48	1.09
2130597--2130639	19	2.3	19	91	0	68	55	4	0	39	1.20
2135157--2135182	2	13.0	2	100	0	52	50	0	0	50	1.00
2135182--2135211	2	15.0	2	100	0	60	0	0	50	50	1.00
2140669--2140709	21	2.0	21	85	9	57	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2140683--2140779	23	4.1	24	73	18	80	53	1	0	45	1.07
2140690--2140779	22	3.9	24	77	21	86	54	1	0	44	1.07
2141406--2141460	29	2.0	28	89	7	85	50	0	10	38	1.37
2144321--2144364	21	2.2	19	84	8	52	70	4	20	4	1.23
2144448--2144486	2	19.5	2	83	0	51	41	0	2	56	1.13
2144438--2144528	16	5.5	17	73	12	66	32	0	4	62	1.15
2144435--2144487	6	9.5	6	82	12	51	35	0	1	62	1.06
2144426--2144513	22	3.9	22	78	12	72	32	0	5	61	1.20
2145498--2145547	20	2.4	22	80	6	59	32	2	0	66	1.03
2145594--2145640	12	3.5	14	85	11	55	48	0	0	51	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17