genome.fa.s65.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold65
Parameters: 2 7 7 80 10 50 1000
Length:  3097370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  14  of  17  ( 1956 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2598682--2598734	27	2.0	26	82	10	63	60	0	1	37	1.08
2598914--2598939	2	13.0	2	100	0	52	50	0	0	50	1.00
2603396--2603439	21	2.1	21	82	0	52	45	4	0	50	1.22
2603546--2603580	15	2.4	15	90	4	54	22	0	8	68	1.16
2603833--2603878	10	5.1	9	80	17	51	45	0	0	54	0.99
2603902--2603958	23	2.5	23	82	2	71	24	1	3	70	1.13
2603896--2603958	11	5.4	12	75	11	60	25	3	3	68	1.19
2604394--2604471	38	2.1	39	80	9	90	38	0	1	60	1.05
2604813--2604866	18	2.9	18	81	15	58	46	1	1	50	1.23
2604883--2604923	17	2.5	17	84	7	59	43	0	0	56	0.99
2605061--2605121	7	8.9	7	77	12	56	81	0	14	3	0.80
2605061--2605119	27	2.2	26	87	3	82	81	0	15	3	0.82
2605469--2605507	17	2.3	18	82	13	55	56	0	0	43	0.99
2606522--2606919	202	2.0	200	93	3	685	44	8	6	40	1.60
2606783--2606830	20	2.6	18	80	6	51	47	2	0	50	1.12
2607038--2607070	15	2.1	16	94	5	59	75	0	0	24	0.80
2607322--2607351	15	2.0	15	93	0	51	50	0	0	50	1.00
2607551--2607588	18	2.0	19	90	10	60	28	0	2	68	1.03
2608240--2608294	19	2.8	19	86	5	74	50	0	3	45	1.19
2608229--2608295	18	3.7	18	77	13	66	50	0	2	46	1.16
2608488--2608534	2	24.0	2	93	4	78	53	0	0	46	1.00
2611582--2611663	27	3.1	26	76	15	78	47	0	1	51	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2611594--2611665	20	3.7	20	71	21	55	45	0	1	52	1.09
2612406--2612474	32	2.1	33	82	12	81	69	0	0	30	0.89
2612424--2612502	19	4.1	19	79	14	72	63	1	0	35	1.03
2612424--2612471	14	3.6	14	74	20	50	68	0	0	31	0.90
2612414--2612474	33	1.9	30	84	15	79	68	0	0	31	0.89
2612563--2612632	32	2.3	31	77	5	79	67	2	0	30	1.05
2612558--2612660	33	3.1	33	78	10	95	66	2	0	31	1.07
2613091--2613128	20	2.0	20	84	5	51	31	2	5	60	1.33
2613495--2613530	17	2.2	16	90	5	54	55	0	2	41	1.14
2615043--2615095	16	3.3	17	82	17	69	56	9	5	28	1.54
2615060--2615111	16	3.2	16	86	5	52	55	15	5	23	1.61
2620058--2620099	20	2.0	21	90	9	68	42	0	0	57	0.99
2620057--2620092	10	3.6	10	84	0	54	44	0	0	55	0.99
2620054--2620103	20	2.6	18	79	17	55	42	0	0	58	0.98
2620068--2620168	49	2.1	49	83	9	127	49	0	0	49	1.07
2620122--2620161	21	1.9	21	85	10	55	65	0	0	35	0.93
2620455--2620489	17	2.2	16	90	10	54	42	11	2	42	1.55
2620793--2620826	2	17.0	2	93	0	59	50	2	0	47	1.16
2621671--2621713	21	2.0	20	83	16	52	67	0	0	32	0.91
2622100--2622139	18	2.3	18	86	4	55	35	7	2	55	1.42
2625333--2625370	13	2.6	14	84	16	51	57	0	0	42	0.98
2625351--2625395	23	1.9	24	90	4	74	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2626010--2626054	13	3.5	13	82	17	58	71	0	0	28	0.87
2628166--2628229	18	3.3	18	71	21	58	31	12	17	39	1.87
2629224--2629877	241	2.7	240	88	3	927	28	24	10	36	1.89
2629805--2629944	68	2.1	67	94	1	244	23	20	15	40	1.91
2629567--2630168	310	1.9	308	86	4	863	26	24	12	36	1.91
2635319--2635353	17	2.1	16	89	5	52	42	0	0	57	0.99
2637533--2637601	17	4.3	15	71	18	50	50	1	8	39	1.42
2638982--2639048	28	2.5	26	83	9	73	56	5	2	34	1.39
2643222--2643275	21	2.7	20	85	2	72	53	0	1	44	1.11
2643224--2643278	20	2.7	21	83	8	69	52	0	1	45	1.11
2643667--2643703	3	12.7	3	94	5	67	29	0	0	70	0.88
2643665--2643703	20	2.0	20	100	0	78	28	0	0	71	0.86
2643670--2643704	17	2.1	17	100	0	70	28	0	0	71	0.86
2644164--2644239	15	5.1	15	75	15	59	55	0	0	44	0.99
2644177--2644256	28	3.0	27	75	14	76	56	1	0	42	1.07
2644162--2644245	44	2.0	43	82	13	104	53	0	0	46	1.00
2644249--2644297	22	2.3	20	86	6	62	61	0	4	34	1.15
2644528--2644572	23	2.0	23	81	0	54	48	2	8	40	1.47
2644681--2644728	23	2.1	23	84	7	62	68	8	2	20	1.26
2644679--2644739	11	5.5	11	77	11	52	65	6	3	24	1.32
2645236--2645294	9	6.1	10	72	20	54	66	1	0	32	1.02
2645227--2645321	35	2.6	35	83	11	111	66	1	0	32	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2645279--2645323	20	2.1	22	84	8	58	66	0	0	33	0.92
2645339--2645365	14	1.9	14	100	0	54	0	14	0	85	0.61
2645397--2645463	12	5.6	12	77	8	66	0	19	2	77	0.89
2645405--2645462	4	15.2	4	84	13	70	0	20	3	75	0.94
2645405--2645458	23	2.4	23	87	9	76	0	20	3	75	0.95
2645477--2645501	10	2.5	10	100	0	50	92	8	0	0	0.40
2649536--2649586	22	2.4	21	83	3	57	29	0	0	70	0.87
2649547--2649597	13	4.1	13	83	16	56	31	0	0	68	0.90
2649567--2649618	16	3.3	15	76	7	59	25	0	1	73	0.94
2649540--2649604	12	4.8	13	78	18	55	30	0	1	67	1.00
2649569--2649633	32	2.0	34	88	8	100	27	1	4	66	1.20
2650175--2650219	19	2.3	20	81	11	58	37	0	0	62	0.96
2651134--2651166	2	16.5	2	100	0	66	51	0	0	48	1.00
2653313--2653404	9	10.0	8	76	18	58	18	1	4	76	1.02
2653325--2653358	16	2.1	16	88	0	50	17	0	2	79	0.86
2665863--2665894	10	2.8	12	81	18	50	59	0	0	40	0.97
2665863--2665949	20	4.3	21	73	21	71	59	2	0	37	1.10
2665857--2665949	28	3.2	28	72	14	89	60	2	0	37	1.09
2665875--2665974	19	5.1	19	75	20	66	60	4	0	36	1.16
2665856--2665981	59	2.1	58	82	8	148	61	3	0	35	1.12
2670814--2670898	38	2.3	38	80	7	97	50	0	1	48	1.08
2670890--2670928	14	2.7	15	84	4	53	51	0	5	43	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2670890--2671061	79	2.2	79	89	2	256	46	1	5	46	1.34
2679428--2679514	45	1.9	45	90	0	138	56	2	21	19	1.53
2682675--2682790	38	3.2	36	70	22	91	57	1	0	39	1.15
2683418--2683458	17	2.2	18	87	12	57	43	0	0	56	0.99
2683371--2683509	73	1.9	72	79	7	156	47	0	0	51	1.11
2683944--2684051	14	7.6	14	73	16	80	40	1	0	57	1.09
2683975--2684042	20	3.4	19	75	20	68	42	0	0	57	0.98
2684047--2684108	10	6.4	10	76	16	60	25	0	1	72	0.94
2683981--2684105	17	7.4	17	69	16	64	35	0	0	64	1.00
2684067--2684107	21	2.0	21	90	9	66	26	0	0	73	0.84
2683970--2684114	20	6.8	20	68	25	59	36	0	0	62	1.00
2684452--2684490	21	1.9	21	89	5	62	15	2	2	79	0.95
2686725--2686755	12	2.7	12	95	5	55	41	9	38	9	1.71
2687455--2687483	2	14.5	2	100	0	58	48	0	0	51	1.00
2687960--2687989	2	15.0	2	100	0	60	50	0	0	50	1.00
2688717--2688774	24	2.4	23	81	13	64	62	0	0	37	0.96
2690002--2690054	21	2.4	22	75	15	56	58	0	1	39	1.09
2692122--2692146	2	12.5	2	100	0	50	48	0	0	52	1.00
2692589--2692634	19	2.5	19	76	13	51	28	0	0	71	0.86
2692584--2692647	28	2.4	26	82	10	67	26	0	1	71	0.94
2692584--2692647	26	2.4	27	82	15	71	26	0	1	71	0.94
2692594--2692661	23	2.8	25	72	20	63	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2699697--2699749	21	2.7	20	76	5	54	50	0	0	49	1.00
2699722--2699767	25	2.0	24	83	12	60	50	2	0	47	1.13
2702033--2702057	4	6.2	4	100	0	50	24	52	24	0	1.48
2704428--2704452	3	8.3	3	100	0	50	32	0	0	68	0.90
2705151--2705208	13	4.2	13	74	23	55	60	0	0	39	0.97
2705204--2705236	17	1.9	17	93	0	57	69	3	0	27	1.03
2706733--2706766	2	17.0	2	100	0	68	50	0	0	50	1.00
2707392--2707437	19	2.4	20	86	13	62	47	0	0	52	1.00
2710300--2710383	29	3.0	28	91	5	134	0	10	5	83	0.81
2710311--2710381	22	3.2	22	81	14	85	0	9	5	84	0.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17