genome.fa.s65.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold65
Parameters: 2 7 7 80 10 50 1000
Length:  3097370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  8  of  17  ( 1956 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1702661--1702697	16	2.3	16	90	0	56	40	0	0	59	0.97
1702826--1702879	13	3.8	13	77	15	54	46	1	3	48	1.30
1702803--1702893	29	3.1	29	84	6	103	51	1	3	43	1.25
1703403--1703437	17	2.1	17	88	0	52	48	2	0	48	1.16
1703663--1703693	11	2.8	11	95	0	53	77	0	0	22	0.77
1703660--1703708	16	3.2	16	80	8	59	73	0	0	26	0.83
1703702--1703815	2	63.5	2	65	20	56	54	0	0	45	0.99
1703717--1703789	14	5.1	14	72	18	62	50	0	0	49	1.00
1703755--1703818	19	3.5	18	81	12	69	57	0	0	42	0.98
1703755--1703812	21	2.7	21	78	2	71	56	0	0	43	0.99
1703670--1703816	26	5.7	26	71	18	105	58	0	0	41	0.98
1705161--1705195	17	2.1	17	94	0	61	42	0	2	54	1.15
1705552--1705602	11	4.8	10	75	20	50	54	3	0	41	1.19
1707763--1707801	15	2.7	15	92	4	62	58	0	5	35	1.20
1708936--1708964	2	14.5	2	100	0	58	51	0	0	48	1.00
1709448--1709516	5	14.0	5	73	19	56	57	1	1	39	1.16
1709451--1709496	19	2.3	19	85	7	56	63	2	2	32	1.19
1711393--1711426	18	1.9	17	88	5	50	58	0	0	41	0.98
1711398--1711427	15	2.0	15	93	0	51	56	0	0	43	0.99
1715544--1715617	35	2.1	35	85	5	96	31	12	9	47	1.73
1716011--1716039	13	2.1	14	93	6	51	65	0	17	17	1.27
1722758--1722828	26	2.8	24	80	12	88	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1722751--1722834	25	3.4	25	80	11	109	57	0	0	42	0.99
1722840--1722926	41	2.1	40	83	8	104	54	4	0	41	1.21
1726096--1726147	20	2.7	20	87	3	70	38	1	11	48	1.51
1726569--1726614	2	23.0	2	90	0	74	47	0	4	47	1.21
1726681--1726736	29	1.9	29	81	0	67	42	3	0	53	1.18
1727985--1728159	57	3.1	57	86	6	264	50	3	2	43	1.31
1728725--1728758	14	2.5	13	85	4	50	29	0	2	67	1.05
1728723--1728756	13	2.6	14	90	9	54	29	0	5	64	1.17
1737949--1738042	50	1.9	50	82	6	122	44	2	0	53	1.12
1741025--1741059	6	5.8	6	96	0	61	48	31	2	17	1.61
1744624--1744721	47	2.1	47	88	3	144	40	18	15	25	1.89
1746204--1746258	23	2.4	21	77	16	56	61	0	0	38	0.96
1762918--1763254	170	2.0	165	90	4	532	27	16	21	35	1.94
1764744--1764787	22	2.0	21	83	12	54	34	0	6	59	1.24
1767371--1767406	2	18.0	2	100	0	72	50	0	0	50	1.00
1771086--1771125	7	6.0	7	91	5	57	37	0	0	62	0.95
1771084--1771131	13	3.7	13	83	10	62	33	0	0	66	0.92
1771084--1771129	6	7.3	6	92	4	65	32	0	0	67	0.91
1771427--1771459	2	16.5	2	93	0	57	48	0	3	48	1.17
1772104--1772141	19	2.0	20	89	5	60	63	2	0	34	1.09
1772612--1772649	2	19.0	2	100	0	76	50	0	0	50	1.00
1774476--1774564	29	3.0	29	78	4	81	35	3	1	59	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1774490--1774562	29	2.5	29	84	2	83	38	4	1	56	1.27
1774540--1774573	17	1.9	18	94	5	61	50	5	0	44	1.26
1774594--1774666	29	2.5	28	78	6	83	53	1	2	42	1.23
1775290--1775334	14	2.9	16	83	16	67	60	0	0	40	0.97
1776536--1776593	20	2.7	22	76	7	66	55	0	1	43	1.10
1776589--1776637	21	2.2	21	85	7	62	48	2	0	48	1.12
1776902--1776945	19	2.3	19	92	0	70	54	0	0	45	0.99
1776893--1776940	24	2.1	22	88	7	69	56	0	0	43	0.99
1779191--1779237	25	2.0	23	83	8	58	57	0	0	42	0.98
1779233--1779276	14	3.1	14	78	12	54	45	2	2	50	1.27
1779251--1779293	18	2.3	19	88	4	61	44	0	0	55	0.99
1779283--1779327	18	2.4	19	85	3	56	33	0	2	64	1.06
1782976--1783035	26	2.3	27	78	18	72	51	1	0	46	1.10
1782975--1783045	27	2.6	28	72	14	69	54	1	0	43	1.08
1783416--1783453	19	2.0	20	94	5	69	47	0	0	52	1.00
1786505--1786544	17	2.5	16	88	8	55	45	5	0	50	1.23
1787155--1787442	50	5.8	50	92	0	441	28	20	18	31	1.97
1789295--1789350	20	2.8	19	89	5	76	41	16	16	26	1.88
1789420--1789445	13	2.0	13	100	0	52	38	15	15	30	1.88
1789402--1789466	34	2.0	32	84	6	85	44	16	12	26	1.83
1795515--1795593	20	3.7	20	72	18	68	29	16	15	39	1.89
1795714--1795760	22	2.3	20	78	10	51	34	19	4	42	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1797299--1797325	13	2.1	13	100	0	54	37	0	14	48	1.45
1797390--1797441	25	2.1	25	100	0	104	42	0	26	30	1.56
1798014--1798069	20	2.8	19	89	5	76	41	16	16	26	1.88
1798121--1798172	21	2.6	21	87	6	72	44	17	13	25	1.85
1801729--1801945	50	4.3	50	80	8	217	36	22	11	29	1.89
1801729--1801965	100	2.4	100	81	1	278	35	20	12	32	1.90
1802043--1802076	2	17.0	2	93	0	59	47	0	2	50	1.16
1802840--1802886	21	2.2	22	78	17	55	29	0	4	65	1.11
1803597--1803687	42	2.1	44	82	8	116	46	1	0	52	1.07
1803642--1803679	20	1.9	19	89	5	58	42	0	0	57	0.98
1804059--1804088	13	2.3	13	94	0	51	43	3	0	53	1.17
1804900--1804929	2	15.0	2	92	0	51	53	0	46	0	1.00
1807516--1807587	38	1.9	37	83	8	92	37	1	5	55	1.32
1807982--1808055	3	24.7	3	80	5	69	29	0	6	63	1.20
1808910--1808951	19	2.3	18	80	8	50	35	2	2	59	1.23
1809121--1809169	21	2.3	21	79	10	55	38	0	2	59	1.09
1809375--1809399	13	1.9	13	100	0	50	72	8	4	16	1.24
1810354--1810563	105	2.0	105	83	1	269	44	8	3	42	1.53
1810464--1810499	16	2.3	15	90	4	54	38	2	0	58	1.13
1811455--1811495	2	21.0	2	80	14	50	48	2	0	48	1.14
1811455--1811501	10	5.0	9	82	12	51	48	4	0	46	1.21
1813987--1814046	23	2.5	25	78	10	72	50	0	3	46	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1815520--1815581	17	3.7	17	77	10	65	35	3	0	61	1.12
1815528--1815581	11	4.8	12	82	13	69	37	1	0	61	1.07
1815688--1815743	15	3.7	15	77	13	51	41	0	0	58	0.98
1818830--1818859	2	15.5	2	93	6	53	50	0	0	50	1.00
1819657--1819719	31	2.0	31	93	0	108	39	1	1	57	1.18
1822736--1822772	18	2.0	20	84	10	51	54	0	0	45	1.00
1822752--1822848	18	5.6	18	72	16	60	43	0	0	56	0.99
1822750--1822817	32	2.1	32	89	5	102	45	0	0	54	0.99
1822740--1822826	43	2.0	42	82	12	106	44	0	0	55	0.99
1822775--1822850	37	2.1	37	82	5	91	39	0	0	60	0.97
1822997--1823039	22	2.0	22	86	9	61	30	0	2	67	1.03
1825151--1825192	19	2.1	21	86	8	61	38	2	2	57	1.25
1825218--1825261	20	2.2	20	87	0	61	43	0	0	56	0.99
1826536--1826598	16	3.8	16	77	6	63	55	3	0	41	1.16
1826559--1826592	17	1.9	18	88	5	52	55	2	0	41	1.15
1826533--1826606	33	2.3	31	77	9	76	52	5	0	41	1.24
1827237--1827291	28	2.0	28	85	7	76	32	0	0	67	0.91
1830301--1830335	17	2.0	18	88	5	54	71	0	0	28	0.86
1831488--1831522	2	17.5	2	87	0	52	48	0	2	48	1.16
1835227--1835267	16	2.6	16	80	11	57	46	4	4	43	1.46
1839731--1839772	21	2.0	21	81	9	50	28	0	0	71	0.86
1840787--1840826	21	2.0	20	90	5	62	57	0	2	40	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1841530--1841573	2	22.5	2	95	4	81	47	0	0	52	1.00
1842877--1842910	18	2.0	16	88	11	50	26	11	14	47	1.79
1848553--1848591	20	1.9	21	89	5	62	58	0	0	41	0.98
1849093--1849154	31	2.0	31	81	12	74	48	0	0	51	1.00
1851089--1851164	37	2.0	37	82	12	93	42	1	0	56	1.07
1853082--1853158	39	2.0	39	82	7	95	63	5	15	15	1.47
1854091--1854120	15	2.0	15	93	0	51	63	0	0	36	0.95
1854384--1854436	21	2.5	22	78	12	56	62	0	1	35	1.06
1854389--1854433	15	2.8	16	86	10	65	62	0	2	35	1.08
1854388--1854453	10	6.3	11	71	15	50	57	0	1	40	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17