Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold65
Parameters: 2 7 7 80 10 50 1000
Length:  3097370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  17  of  17  ( 1956 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3056249--3056286
14
2.5
16
83
12
53
55
0
0
44
0.99
3056498--3056541
17
2.4
18
82
17
56
59
2
0
38
1.10
3056761--3056789
14
2.1
14
93
6
51
55
0
0
44
0.99
3056948--3057001
2
27.0
2
92
0
90
46
3
0
50
1.19
3061927--3062359
214
2.0
217
87
4
626
29
17
20
32
1.95
3064104--3064167
32
2.0
32
100
0
128
28
18
18
34
1.95
3065339--3065392
2
27.0
2
100
0
108
50
0
0
50
1.00
3066050--3066110
27
2.3
26
73
15
63
42
0
0
57
0.98
3066150--3066321
66
2.6
67
84
7
219
38
1
8
50
1.44
3066244--3066299
20
2.9
18
82
12
60
35
0
7
57
1.26
3066323--3066366
22
2.0
22
100
0
88
50
4
9
36
1.55
3066323--3066379
22
2.6
22
88
5
71
50
3
7
38
1.46
3076219--3076472
133
1.9
133
90
1
402
35
12
15
36
1.85
3077772--3077830
2
30.0
2
93
3
102
49
1
0
49
1.11
3078920--3078977
19
2.9
19
80
16
57
48
0
1
50
1.11
3079659--3079733
20
3.8
20
78
0
87
34
13
12
40
1.81
3079659--3079736
40
2.0
39
87
2
111
34
12
12
39
1.82
3080647--3080703
22
2.5
24
88
11
100
17
10
8
63
1.51
3080656--3080710
22
2.6
21
88
5
58
20
9
9
61
1.52
3087610--3087688
23
3.3
23
77
14
88
59
3
24
12
1.50
3087626--3087681
27
2.1
27
89
0
85
62
3
23
10
1.43
3092209--3092262
22
2.6
20
86
11
81
62
9
7
20
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3092216--3092264
22
2.2
22
100
0
98
67
8
8
16
1.40
3093186--3093260
20
3.8
20
80
3
80
40
12
13
34
1.81
3093183--3093260
40
2.0
39
87
2
111
39
12
12
34
1.82
3093836--3094927
32
35.6
32
87
5
1100
20
17
31
30
1.96
3093828--3094927
64
17.9
64
89
4
1251
20
18
30
30
1.96
3094898--3095282
27
14.1
27
85
8
494
26
14
34
24
1.94
3094898--3095282
82
4.7
82
86
7
491
26
14
34
24
1.94
3094928--3095282
55
6.5
55
89
3
495
26
14
34
24
1.93
3094928--3095282
109
3.2
108
89
3
514
26
14
34
24
1.93
3096333--3096364
6
5.7
6
92
7
50
0
0
9
90
0.45
3096333--3096365
12
2.8
12
90
0
57
0
0
9
90
0.44
3096638--3096682
17
2.7
17
80
13
58
4
15
11
68
1.34
3096614--3096695
39
2.1
40
84
6
105
4
12
8
74
1.20
3096655--3096697
22
1.9
23
85
4
61
4
11
11
72
1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17

The End!