genome.fa.s65.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold65
Parameters: 2 7 7 80 10 50 1000
Length:  3097370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  2  of  17  ( 1956 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
189130--189162	17	1.9	17	93	0	57	57	0	0	42	0.98
189220--189256	17	2.2	17	90	0	56	54	2	0	43	1.14
189432--189456	1	25.0	1	100	0	50	0	0	0	100	0.00
194055--194086	14	2.4	14	94	5	57	25	15	6	53	1.65
197699--197743	20	2.2	20	84	8	54	64	2	2	31	1.18
198873--198931	22	2.5	23	86	8	66	38	5	0	55	1.22
198881--198931	22	2.2	24	89	6	79	41	3	0	54	1.19
199372--199438	26	2.5	27	74	9	66	55	0	1	43	1.09
202618--202650	11	2.8	12	86	9	50	45	0	0	54	0.99
214823--214861	2	19.5	2	100	0	78	48	0	0	51	1.00
216435--216461	2	13.5	2	100	0	54	48	0	0	51	1.00
217379--217405	2	13.5	2	100	0	54	51	0	0	48	1.00
219285--219342	19	3.4	17	75	17	57	39	0	1	58	1.08
219285--219342	18	3.3	18	75	18	59	39	0	1	58	1.08
227642--227682	3	13.7	3	100	0	82	31	0	0	68	0.90
230934--231333	131	3.0	131	63	22	310	31	20	15	33	1.93
236408--236579	86	2.0	86	100	0	344	36	17	16	30	1.92
237842--237881	19	2.1	19	90	4	62	52	0	20	27	1.46
237842--237879	20	1.9	20	100	0	76	55	0	21	23	1.44
239924--239953	15	2.0	15	93	0	51	86	3	10	0	0.67
247633--247752	61	2.0	61	89	1	186	29	9	10	51	1.66
248821--248907	27	3.4	25	81	13	88	57	3	0	39	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
252755--252811	25	2.3	24	79	8	60	36	8	7	47	1.62
254518--254549	2	16.0	2	100	0	64	50	0	0	50	1.00
257872--257897	3	8.7	3	100	0	52	30	0	0	69	0.89
260251--260311	2	32.5	2	80	12	76	50	1	0	47	1.10
261197--261223	2	13.5	2	100	0	54	48	0	0	51	1.00
262472--262517	2	23.5	2	86	4	67	45	2	0	52	1.13
262840--262865	3	8.7	3	100	0	52	69	0	0	30	0.89
263032--263072	17	2.4	17	95	0	73	51	4	0	43	1.23
263211--263240	2	15.0	2	92	0	51	50	3	0	46	1.18
266442--266469	2	14.0	2	100	0	56	50	0	0	50	1.00
270810--270834	8	3.1	8	100	0	50	36	0	0	64	0.94
270802--270900	42	2.4	43	75	11	107	46	1	1	51	1.14
270867--270912	24	1.9	24	82	8	58	56	0	0	43	0.99
271007--271040	14	2.4	14	85	0	50	52	2	0	44	1.16
272323--272348	2	13.0	2	100	0	52	50	0	0	50	1.00
279915--279964	14	3.4	15	73	13	50	40	2	0	58	1.10
282222--282255	3	11.3	3	100	0	68	0	32	0	67	0.91
282880--282921	15	2.8	16	78	10	52	52	0	0	47	1.00
283294--283361	35	2.0	33	85	5	91	60	2	0	36	1.12
283642--283686	14	3.1	15	90	3	65	53	8	6	31	1.58
283732--283759	2	14.0	2	100	0	56	50	0	0	50	1.00
283959--284041	19	4.2	20	73	14	82	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
283963--284041	31	2.7	28	81	16	90	65	0	0	34	0.93
284105--284129	2	12.5	2	100	0	50	48	0	0	52	1.00
284292--284332	15	2.7	15	79	20	50	21	4	7	65	1.37
284363--284392	2	15.0	2	100	0	60	0	50	0	50	1.00
285759--285783	12	2.1	12	100	0	50	52	0	32	16	1.44
289210--289271	30	2.1	30	100	0	124	48	9	12	29	1.73
291398--291427	2	15.0	2	100	0	60	0	50	0	50	1.00
296625--296716	33	2.7	34	79	11	84	21	1	8	68	1.23
297090--297145	23	2.5	22	82	8	60	46	1	0	51	1.11
304487--304529	18	2.3	19	84	8	52	25	13	13	46	1.81
307132--307220	29	3.1	29	67	15	76	26	6	5	60	1.44
307601--307644	16	2.6	17	82	7	54	15	2	15	65	1.36
308363--308400	17	2.2	18	90	4	60	57	5	0	36	1.21
313924--313976	21	2.5	21	84	9	63	52	1	1	43	1.23
318319--318376	28	2.0	29	87	9	84	53	0	0	46	1.00
324206--324253	4	12.2	4	95	4	89	25	52	0	22	1.48
325233--325276	21	2.1	21	91	0	70	59	6	2	31	1.36
329364--329417	20	2.8	21	78	13	62	40	0	0	59	0.98
329366--329428	20	3.2	20	78	15	53	38	0	0	61	0.96
329366--329422	28	2.1	25	81	18	62	36	0	0	63	0.95
329591--329644	18	3.1	17	75	24	51	38	1	0	59	1.08
329964--330000	19	1.9	19	88	0	56	35	2	2	59	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
330222--330254	13	2.5	13	85	14	50	69	0	0	30	0.88
330259--330322	30	2.1	30	82	11	76	54	3	3	39	1.32
330345--330399	24	2.2	25	90	3	85	49	5	3	41	1.43
332247--332271	13	1.9	13	100	0	50	0	28	0	72	0.86
336869--336934	27	2.6	24	75	20	62	31	1	3	63	1.19
336941--337018	30	2.7	30	86	4	106	52	0	1	46	1.08
336965--337012	23	2.0	24	88	4	71	58	0	0	41	0.98
338106--338144	2	19.5	2	94	0	69	48	2	48	0	1.15
339761--339786	7	3.7	7	100	0	52	0	11	0	88	0.52
344940--345012	37	2.0	35	82	12	85	43	0	1	54	1.08
352317--352344	2	14.0	2	100	0	56	0	50	0	50	1.00
352746--352847	33	3.1	33	98	0	195	31	16	11	40	1.85
359717--359755	4	9.8	4	94	0	69	48	23	2	25	1.63
361290--361340	17	3.1	17	76	18	54	56	0	0	43	0.99
362453--362482	15	1.9	16	93	6	53	40	0	0	60	0.97
362861--362907	20	2.4	18	82	10	58	0	19	0	80	0.70
362861--362907	19	2.4	19	83	13	60	0	19	0	80	0.70
362954--363019	25	2.8	24	73	17	66	65	1	3	30	1.17
363206--363260	21	2.6	21	72	18	51	69	9	0	21	1.16
363402--363461	10	6.1	10	74	16	54	58	0	1	40	1.08
363400--363446	13	3.4	14	76	8	51	63	0	2	34	1.06
363402--363497	19	5.3	18	70	18	65	61	0	1	37	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
363402--363473	9	7.8	9	76	17	51	56	0	1	41	1.07
366295--366322	2	14.0	2	100	0	56	50	0	50	0	1.00
371706--371732	2	13.5	2	100	0	54	48	0	0	51	1.00
371879--371903	2	12.5	2	100	0	50	52	48	0	0	1.00
375287--375321	15	2.3	15	95	0	61	25	45	0	28	1.54
381742--381931	71	2.7	71	85	1	265	52	21	14	12	1.74
382517--382667	76	1.9	79	83	9	195	49	0	0	49	1.10
382651--382689	19	2.0	20	90	5	62	41	0	0	58	0.98
384626--384661	2	18.0	2	100	0	72	50	0	0	50	1.00
390359--390388	6	5.2	6	92	8	53	36	0	0	63	0.95
390359--390402	11	3.9	11	85	11	54	36	0	0	63	0.95
390390--390446	18	2.9	19	82	12	53	45	0	0	54	0.99
390402--390446	18	2.4	19	88	7	65	46	0	0	53	1.00
390388--390450	19	3.3	19	80	13	67	44	0	0	55	0.99
390978--391067	41	2.2	42	84	6	112	57	0	0	42	0.98
395522--395564	21	2.0	21	86	0	59	53	2	4	39	1.34
395569--395595	2	13.5	2	100	0	54	51	0	0	48	1.00
396119--396158	18	2.4	16	87	8	53	35	0	0	65	0.93
399252--399292	18	2.3	18	86	0	55	0	14	4	80	0.87
399464--399496	17	1.9	17	100	0	66	30	6	6	57	1.47
413615--413671	25	2.2	27	78	15	66	49	0	0	50	1.00
416467--416526	22	2.9	21	77	20	63	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
416469--416574	22	4.8	22	69	18	60	54	0	0	45	0.99
416492--416577	44	1.9	45	81	11	106	59	0	0	40	0.97
416582--416678	45	2.1	45	79	9	108	55	3	0	41	1.15
416996--417024	12	2.3	13	94	5	51	51	0	0	48	1.00
417474--417552	9	8.7	9	71	10	54	39	1	0	59	1.06
417488--417534	19	2.5	19	82	6	60	38	0	0	61	0.96
418773--418820	3	16.0	3	95	0	87	33	2	0	64	1.05
424676--424748	38	1.9	37	91	2	119	42	1	9	46	1.45
426036--426062	11	2.5	11	100	0	54	33	0	0	66	0.92
426910--426934	11	2.3	11	100	0	50	16	0	16	68	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17