Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold198
Parameters: 2 7 7 80 10 50 1000
Length:  3915534

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  13  of  13  ( 1467 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3825785--3825871
20
4.5
21
72
20
66
37
11
10
40
1.76
3825803--3825881
37
2.1
38
83
6
99
40
10
7
41
1.67
3825908--3826138
17
12.9
16
73
19
140
43
10
14
31
1.79
3825908--3826132
18
12.4
18
75
15
173
44
10
14
31
1.78
3825892--3826129
74
3.2
74
78
11
206
43
10
14
31
1.80
3825908--3826138
37
6.4
37
72
17
157
43
10
14
31
1.79
3826255--3826286
17
1.9
16
100
0
55
56
12
12
18
1.67
3826424--3826474
22
2.3
23
86
3
68
78
3
1
15
0.99
3826472--3826515
21
2.1
21
82
0
52
63
11
6
18
1.48
3826901--3826951
14
3.9
14
75
15
54
0
25
0
74
0.82
3827448--3827597
30
5.0
30
83
6
162
37
4
24
33
1.76
3827428--3827597
30
5.7
29
79
8
155
37
6
24
31
1.81
3827437--3827586
59
2.5
60
79
8
171
36
6
26
32
1.81
3827428--3827593
89
1.9
89
86
5
237
36
6
24
31
1.81
3828525--3828569
20
2.2
20
84
7
56
51
11
6
31
1.63
3829164--3829210
24
2.0
24
83
8
60
23
2
2
72
1.06
3830732--3830764
16
2.1
16
94
0
57
15
21
30
33
1.94
3837380--3837471
46
2.0
44
87
4
130
36
22
19
20
1.95
3838805--3838864
28
2.2
28
84
3
77
53
15
6
25
1.65
3839372--3840952
791
2.0
790
98
0
3029
40
12
18
28
1.87
3844067--3844180
50
2.2
50
83
6
131
35
13
16
34
1.88
3875375--3875421
19
2.5
19
89
3
69
12
8
4
74
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3875375--3875421
10
5.0
10
82
15
55
12
8
4
74
1.19
3889705--3889876
50
3.4
51
81
7
192
40
12
15
31
1.84
3891420--3891466
20
2.3
20
85
0
58
25
19
29
25
1.98
3914033--3914072
18
2.2
18
86
4
53
12
27
0
60
1.33
3915211--3915245
10
3.4
10
96
4
61
22
2
11
62
1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13

The End!