genome.fa.s3032.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold198
Parameters: 2 7 7 80 10 50 1000
Length:  3915534

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  3  of  13  ( 1467 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
564940--564968	13	2.1	14	93	6	51	10	6	13	68	1.37
567745--567780	18	1.9	18	88	5	54	69	0	2	27	1.02
567743--567774	14	2.4	14	90	10	50	68	0	3	28	1.04
571544--571693	75	2.0	75	98	0	291	23	8	18	50	1.72
571552--571670	39	3.1	39	61	20	97	22	8	18	50	1.73
571934--571972	10	3.8	10	86	6	60	56	10	0	33	1.33
571933--571972	21	2.0	20	95	5	71	55	10	0	35	1.34
574792--575159	40	9.2	40	83	0	450	22	29	17	31	1.96
574988--575053	20	3.3	20	67	0	60	22	36	15	25	1.93
579906--580157	41	6.1	41	82	2	256	37	21	17	23	1.94
579906--580157	82	3.1	82	86	2	337	37	21	17	23	1.94
579906--580130	123	1.8	123	84	3	310	38	21	17	22	1.93
579906--580157	123	2.0	123	82	3	301	37	21	17	23	1.94
583158--583214	28	2.0	28	90	6	89	28	21	24	26	1.99
583317--583371	26	2.1	26	89	0	83	34	20	21	23	1.97
583534--583606	27	2.7	26	82	12	94	21	16	19	42	1.89
584585--584686	38	2.7	37	77	15	104	49	4	37	8	1.56
585153--585452	154	1.9	154	98	0	582	41	23	10	25	1.86
586155--586196	13	3.2	13	83	9	50	40	7	4	47	1.52
586529--586595	35	1.9	35	93	0	116	44	11	7	35	1.70
591527--591575	11	4.5	11	89	0	80	26	44	2	26	1.65
594546--594641	43	2.3	42	85	1	120	25	16	22	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
601090--601159	32	2.2	32	97	2	133	57	0	8	34	1.29
604359--604408	23	2.1	24	85	10	68	36	2	0	62	1.07
604427--604484	19	3.1	19	79	18	59	37	0	3	58	1.15
604549--604592	24	1.9	23	86	9	63	52	6	6	34	1.55
605232--605297	30	2.3	29	84	10	91	46	9	24	19	1.78
608613--608773	63	2.6	63	82	2	207	25	24	22	26	2.00
626126--626153	13	2.2	13	100	0	56	25	25	14	35	1.93
627123--627152	6	5.0	6	100	0	60	83	0	0	16	0.65
628021--628301	140	2.0	143	88	4	428	41	13	11	33	1.80
628796--628840	20	2.3	20	84	3	56	24	11	15	48	1.77
629998--630031	5	6.8	5	93	0	59	44	17	0	38	1.49
635647--635705	23	2.6	23	86	5	75	27	0	18	54	1.44
636764--636801	6	6.2	6	90	3	58	0	60	0	39	0.97
636766--636801	18	2.0	18	100	0	72	0	61	0	38	0.96
640184--640236	21	2.5	21	81	0	70	32	35	7	24	1.84
640786--640810	5	5.0	5	100	0	50	80	0	0	20	0.72
641237--641291	14	3.9	13	77	13	56	56	0	12	30	1.37
641242--641291	7	7.1	7	78	17	50	56	0	14	30	1.39
641242--641303	28	2.2	28	82	5	72	51	0	19	29	1.47
644393--644422	16	1.9	15	93	6	51	70	0	0	30	0.88
645576--645618	22	2.0	22	95	0	77	9	16	27	46	1.77
645671--645907	43	5.5	43	86	1	314	25	30	20	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
646249--646409	66	2.4	66	82	2	189	15	27	17	39	1.90
651413--651464	25	2.1	25	81	0	59	34	3	17	44	1.67
651471--651550	25	3.2	25	77	8	83	26	3	20	50	1.65
651496--651692	16	11.9	16	68	16	91	29	3	20	46	1.67
651413--651596	66	2.8	65	78	8	192	29	3	20	46	1.68
651428--651567	41	3.4	41	82	0	163	27	4	20	47	1.68
651513--651600	25	3.5	25	77	9	81	28	4	22	44	1.72
651470--651693	9	27.0	8	69	19	72	29	3	20	47	1.67
651627--651692	25	2.6	25	79	13	73	27	3	19	50	1.63
651725--651835	20	5.8	20	75	12	115	40	4	6	48	1.49
651766--651962	66	3.0	66	88	4	229	36	4	11	48	1.59
651933--652119	20	9.2	20	67	16	98	39	5	8	46	1.59
651715--652104	208	1.9	208	96	0	726	37	4	10	46	1.59
652075--652119	21	2.2	20	96	4	81	40	4	4	51	1.42
651873--652146	142	1.9	142	97	0	521	38	5	10	46	1.60
652195--652225	15	2.1	15	100	0	62	45	6	6	41	1.55
659902--659943	21	2.0	21	90	0	66	57	9	0	33	1.31
660145--660180	15	2.3	16	90	4	56	36	2	0	61	1.11
660318--660373	21	2.6	22	77	8	62	44	32	1	21	1.63
660302--660371	14	5.1	14	74	8	54	42	31	2	22	1.68
660700--660782	7	11.4	7	76	6	67	40	48	0	10	1.38
660701--660753	22	2.5	21	85	11	72	41	50	0	7	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
660716--660772	15	3.9	15	86	4	80	40	47	0	12	1.41
660705--660782	29	2.7	30	88	9	117	42	47	0	10	1.37
660700--660796	7	13.3	7	74	16	65	43	44	0	12	1.42
660863--660900	15	2.6	15	95	4	69	36	34	0	28	1.58
661154--661425	41	6.6	41	85	3	359	29	27	22	20	1.98
661158--661427	123	2.2	123	88	1	398	30	27	22	19	1.98
667062--667133	36	2.0	35	81	7	83	29	19	15	36	1.92
668144--668173	15	1.9	16	93	6	53	56	0	0	43	0.99
668494--668523	16	1.9	16	93	6	53	33	10	6	50	1.62
678896--678972	15	5.1	15	71	12	59	44	7	19	28	1.78
678888--678972	30	2.8	30	92	0	134	44	7	21	27	1.77
683606--683707	15	6.7	15	68	15	66	43	6	22	27	1.79
683657--683707	14	3.5	14	70	19	50	45	5	21	27	1.75
683625--683710	30	2.8	30	89	3	118	43	5	23	27	1.77
685091--685125	15	2.4	15	90	4	54	48	0	8	42	1.33
686569--686642	23	3.1	23	79	7	85	18	4	33	43	1.69
686570--686647	25	3.2	24	82	8	95	20	5	30	43	1.73
689295--689339	2	22.5	2	100	0	90	51	48	0	0	1.00
693903--693963	20	3.0	20	78	4	70	49	13	1	36	1.52
694003--694047	20	2.2	20	88	0	63	37	8	4	48	1.55
694016--694056	20	2.0	20	85	0	55	34	12	7	46	1.69
699653--699712	23	2.6	22	75	19	59	18	16	13	51	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
709951--710023	20	3.7	20	75	17	80	38	15	15	31	1.88
714221--714268	13	3.6	13	78	15	62	77	2	2	18	0.97
720692--720723	15	2.3	15	89	10	50	0	46	0	53	1.00
721736--721786	3	17.0	3	100	0	102	66	0	33	0	0.92
723994--724032	18	2.4	17	84	16	55	28	2	0	69	1.02
724589--724725	40	3.4	40	75	4	125	35	21	24	18	1.95
724795--724830	18	2.0	18	88	0	54	5	30	36	27	1.80
728334--728472	28	5.0	28	83	3	172	22	13	10	53	1.69
733499--733642	41	3.5	41	89	0	207	29	21	22	26	1.99
733510--733683	82	2.1	82	80	4	190	28	21	24	25	1.99
734364--734388	13	1.9	13	100	0	50	16	0	16	68	1.22
736820--737100	129	2.2	129	83	1	348	29	18	14	38	1.90
737354--737394	3	14.0	3	89	5	66	0	29	0	70	0.87
747019--747173	54	2.9	54	76	11	156	29	27	25	18	1.98
747698--747745	19	2.5	20	81	18	59	70	4	18	6	1.25
754339--754364	13	2.0	13	100	0	52	53	7	7	30	1.57
770076--770187	40	2.8	40	75	4	120	36	23	21	18	1.95
770076--770201	40	3.2	38	73	6	99	36	21	20	21	1.95
770660--770692	14	2.3	15	89	5	50	30	0	36	33	1.58
770830--770899	7	10.7	7	83	9	60	14	2	50	32	1.58
770834--770895	6	9.8	6	84	8	70	12	3	51	32	1.56
770828--770905	7	11.9	7	87	2	58	15	2	47	34	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
771985--772030	21	2.2	21	84	7	58	23	50	2	23	1.61
776125--776355	43	5.3	43	91	0	345	20	18	31	29	1.96
779752--779803	26	2.0	27	92	3	88	50	5	0	44	1.26
781996--782562	114	5.0	114	90	2	881	30	20	21	27	1.98
801220--801471	43	5.8	43	79	1	234	24	18	29	27	1.98
801262--801575	86	3.6	86	81	3	292	24	23	26	24	2.00
801412--801598	43	4.4	43	85	3	243	29	29	20	19	1.97
801757--801799	22	2.0	22	90	0	68	44	27	18	9	1.80
802130--802183	28	2.0	27	85	3	72	64	0	29	5	1.16
808259--808283	13	1.9	13	100	0	50	16	0	0	84	0.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13