genome.fa.s3032.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold198
Parameters: 2 7 7 80 10 50 1000
Length:  3915534

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  2  of  13  ( 1467 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
227824--228051	43	5.3	42	83	5	262	21	17	29	32	1.96
227824--228072	87	2.9	87	83	6	292	23	17	27	31	1.97
228143--228188	22	2.1	22	88	8	67	41	30	17	10	1.84
231102--231140	16	2.4	16	100	0	78	48	5	25	20	1.70
237336--237365	15	2.1	14	93	6	51	0	23	0	76	0.78
237318--237371	27	2.0	26	82	3	63	3	25	0	70	1.04
238494--238554	30	2.0	30	90	6	97	37	14	21	26	1.92
245189--245305	55	2.1	55	92	1	191	27	22	5	44	1.76
247497--247565	20	3.7	20	73	15	83	37	17	13	31	1.88
247506--247581	36	2.1	36	100	0	152	35	17	14	32	1.90
248134--248169	17	2.1	17	100	0	72	38	16	16	27	1.90
250801--250894	12	7.7	12	70	17	68	69	2	6	22	1.22
250804--250850	19	2.5	19	80	10	53	65	2	2	29	1.15
250804--250850	6	7.7	6	77	13	51	65	2	2	29	1.15
250816--250886	18	3.8	19	74	7	56	66	1	8	23	1.28
264189--264292	32	3.3	32	81	6	122	39	18	20	22	1.92
264298--264351	26	2.1	26	85	0	72	38	27	16	16	1.90
264481--264527	24	2.0	24	86	0	67	42	21	8	27	1.81
267555--267593	18	2.2	17	82	13	51	5	17	0	76	0.96
270046--270076	16	1.9	16	93	0	53	12	16	12	58	1.64
270437--270628	27	7.2	27	83	7	221	21	15	19	44	1.87
270450--270628	53	3.4	54	86	6	249	21	13	19	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
270437--270628	80	2.4	80	88	3	271	21	15	19	44	1.87
273187--273236	22	2.3	22	78	0	55	68	2	0	30	1.01
274818--274861	19	2.3	19	88	7	63	36	4	22	36	1.75
275391--275449	29	2.1	28	84	9	77	30	22	28	18	1.97
275396--275457	29	2.2	27	80	5	70	35	19	27	17	1.94
285478--285530	8	7.0	8	74	20	51	56	0	16	26	1.41
293132--293157	5	5.2	5	100	0	52	38	19	19	23	1.93
293106--293158	26	2.0	26	82	7	63	33	15	26	24	1.95
293802--293838	9	4.1	9	92	0	65	29	10	13	45	1.77
293892--293922	9	3.4	9	90	0	53	38	22	12	25	1.90
299194--299255	23	2.7	23	85	2	81	9	50	24	16	1.75
305294--305339	6	7.7	6	90	0	56	69	8	6	15	1.34
306216--306258	7	6.1	7	82	17	54	69	0	16	13	1.19
307512--308450	129	7.3	129	94	0	1610	33	19	23	24	1.97
313799--313832	12	2.7	13	95	4	61	26	8	29	35	1.87
313851--313877	13	2.1	13	100	0	54	22	7	33	37	1.82
317247--317272	11	2.4	11	100	0	52	34	7	11	46	1.69
327622--327726	41	2.6	41	84	0	120	36	27	20	15	1.93
327730--327891	38	4.3	38	79	3	166	33	26	20	19	1.97
332945--332979	18	2.1	16	89	10	52	0	17	5	77	0.96
332945--332992	16	2.9	17	81	12	55	0	16	6	77	0.97
332939--332984	24	2.0	22	87	8	65	0	17	6	76	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
333953--334000	25	2.0	26	88	12	75	18	14	25	41	1.88
337335--337443	48	2.2	49	87	4	159	52	1	5	40	1.35
353069--353195	63	2.0	65	87	3	186	29	16	8	45	1.77
357101--357140	10	4.0	10	93	0	71	67	0	0	32	0.91
361197--361246	26	1.9	26	87	0	73	54	8	4	34	1.49
370829--371112	73	3.9	73	98	0	541	26	31	4	37	1.78
378018--378118	52	1.9	52	93	0	175	34	21	17	25	1.96
381452--381486	18	1.9	18	94	0	61	54	0	17	28	1.43
382877--382914	20	2.0	20	94	5	69	23	7	10	57	1.58
383076--383130	16	3.4	16	84	0	74	40	5	23	30	1.77
383112--383205	44	2.1	44	82	11	111	32	4	25	37	1.76
383488--383640	41	3.7	41	82	1	173	22	19	26	30	1.98
383883--383922	14	2.9	14	80	0	53	10	2	45	42	1.51
384002--384042	21	2.0	21	85	0	55	21	2	24	51	1.60
385506--385581	31	2.5	31	95	0	134	17	14	22	46	1.84
387752--387839	43	2.0	43	86	4	124	26	18	27	28	1.98
388446--388484	20	1.9	21	89	5	62	35	0	5	58	1.20
388499--388673	43	4.1	43	82	2	217	25	18	25	31	1.97
389798--389829	15	2.2	15	94	5	57	15	25	6	53	1.65
389902--389960	27	2.2	27	96	0	109	37	11	16	33	1.86
390855--390886	16	2.0	16	100	0	64	56	6	12	25	1.59
393091--393282	27	7.1	27	84	3	244	42	22	16	18	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
393091--393283	80	2.4	80	85	3	262	42	22	16	19	1.89
393658--393759	28	3.6	28	89	0	150	24	24	25	25	2.00
395682--395714	13	2.5	13	100	0	66	21	9	27	42	1.83
400836--400884	20	2.5	19	80	6	62	65	6	14	14	1.45
401452--401648	27	7.3	27	88	6	276	42	18	20	18	1.90
401982--402097	28	4.1	28	94	1	178	24	25	23	26	2.00
407940--408027	40	2.2	40	85	0	122	29	21	22	26	1.99
410280--410316	17	2.2	17	100	0	74	16	35	21	27	1.94
414366--414427	26	2.4	26	91	0	97	40	14	11	33	1.82
417788--417832	22	2.1	22	95	4	83	46	17	17	17	1.84
425129--425167	19	2.2	18	90	9	62	20	15	15	48	1.81
426350--426393	22	1.9	24	86	9	65	34	4	40	20	1.73
431712--431747	18	2.0	18	94	0	63	16	19	0	63	1.30
444315--444662	39	8.9	39	79	0	363	21	31	15	31	1.95
444319--444654	117	2.9	116	83	0	411	21	31	15	31	1.94
445786--445826	20	2.0	20	85	4	55	29	12	7	51	1.66
457540--457612	23	3.2	22	70	18	69	45	4	23	27	1.71
468188--468212	8	3.1	8	100	0	50	60	0	0	40	0.97
468177--468218	18	2.3	19	84	12	52	54	0	0	45	0.99
470266--470317	26	2.0	26	84	0	68	50	9	3	36	1.54
476128--476170	20	2.2	20	91	0	68	41	6	9	41	1.64
476482--476516	15	2.3	15	90	5	52	57	5	2	34	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
478357--478429	35	2.1	34	82	12	87	54	4	2	38	1.34
490019--490104	29	3.0	29	81	6	77	58	3	1	37	1.23
490033--490104	29	2.5	28	82	6	81	59	2	1	36	1.20
495979--496076	28	3.6	27	82	6	117	26	25	16	31	1.96
500696--500760	3	21.7	3	93	0	94	61	0	4	33	1.16
500866--500898	15	2.2	15	94	0	57	72	3	0	24	0.98
505270--505323	25	2.2	25	89	0	81	24	14	44	16	1.85
505744--505816	35	2.1	35	100	0	146	13	27	8	50	1.70
506566--506719	27	5.7	27	80	0	173	41	19	14	24	1.89
506581--506761	54	3.3	52	81	8	211	39	18	17	25	1.92
506616--506761	27	5.4	26	74	14	84	39	17	17	25	1.91
506884--506953	27	2.6	27	80	6	81	18	24	21	35	1.95
508926--508973	23	2.1	23	100	0	96	25	8	39	27	1.84
512934--512987	25	2.2	25	89	0	81	22	11	50	16	1.77
513103--513149	24	2.1	21	84	11	58	31	4	40	23	1.74
514170--514365	27	7.2	27	81	7	184	39	21	16	21	1.92
515467--515618	75	2.0	75	100	0	304	32	23	15	28	1.95
524731--524865	68	2.0	68	89	2	209	28	11	16	43	1.82
524735--524880	68	2.1	68	86	2	195	28	13	15	42	1.84
525227--525365	43	3.3	43	79	8	149	30	17	24	27	1.97
526963--526987	7	3.6	7	100	0	50	72	0	12	16	1.13
532117--532182	22	3.0	22	77	4	62	18	19	21	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
534083--534143	32	1.9	32	83	6	79	29	8	13	49	1.70
534099--534570	176	2.7	177	77	7	451	33	14	10	41	1.80
541588--541612	11	2.3	11	100	0	50	60	24	0	16	1.36
542856--542926	35	2.0	35	100	0	142	42	12	19	25	1.87
545486--545533	24	2.0	24	100	0	96	25	25	20	29	1.99
557516--557878	27	13.4	27	85	5	430	21	18	17	42	1.89
559377--559434	29	2.0	29	93	0	98	20	10	24	44	1.82
559432--559473	20	2.1	20	95	0	75	23	16	23	35	1.95
562805--562850	24	1.9	24	86	0	65	82	13	0	4	0.81
562803--562856	24	2.2	24	76	0	63	81	11	0	7	0.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13