genome.fa.s3032.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold198
Parameters: 2 7 7 80 10 50 1000
Length:  3915534

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  7  of  13  ( 1467 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1689405--1689441	15	2.5	15	90	0	56	24	0	37	37	1.56
1689410--1689441	7	4.2	8	84	15	50	21	0	40	37	1.54
1689535--1689574	21	1.9	21	85	10	55	27	0	30	42	1.56
1689420--1690414	171	5.8	171	100	0	1990	29	2	26	41	1.67
1689706--1689745	21	1.9	21	85	10	55	27	0	30	42	1.56
1689877--1689916	21	1.9	21	85	10	55	27	0	30	42	1.56
1690048--1690087	21	1.9	21	85	10	55	27	0	30	42	1.56
1690219--1690258	21	1.9	21	85	10	55	27	0	30	42	1.56
1693822--1694023	43	4.7	42	87	5	291	17	18	33	31	1.94
1693822--1694023	86	2.4	85	91	2	325	17	18	33	31	1.94
1694071--1694113	22	2.0	22	95	0	77	41	27	20	9	1.83
1697760--1697823	24	2.7	22	76	13	56	46	1	18	32	1.59
1697907--1697985	19	4.2	19	69	15	65	20	18	26	34	1.96
1697926--1698006	38	2.2	37	86	2	117	20	20	24	33	1.97
1698856--1698894	2	19.5	2	100	0	78	48	0	0	51	1.00
1700740--1700805	20	3.3	20	74	6	71	30	16	13	39	1.87
1701698--1701753	22	2.5	22	77	11	69	44	19	21	14	1.86
1711935--1711976	20	2.1	20	86	8	59	47	11	2	38	1.53
1717687--1717716	14	2.1	14	93	0	51	40	23	13	23	1.90
1723251--1723450	39	5.1	39	81	1	231	33	33	17	16	1.92
1728538--1728805	29	9.3	29	75	4	157	38	13	25	22	1.91
1728653--1728721	27	2.4	29	80	7	79	36	4	26	33	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1728706--1728821	59	2.0	58	81	1	133	39	15	24	20	1.91
1747859--1747892	18	1.9	17	88	5	50	61	0	2	35	1.11
1748256--1748319	20	3.2	19	72	18	58	68	0	3	28	1.04
1753909--1753978	29	2.4	31	72	13	76	62	1	2	32	1.18
1756510--1756588	40	2.0	40	92	2	133	22	18	22	35	1.96
1757523--1757590	34	2.0	34	85	5	93	29	23	26	20	1.99
1765783--1765833	22	2.3	21	80	12	57	43	3	5	47	1.46
1766789--1766835	23	2.0	23	87	4	67	31	6	4	57	1.43
1773007--1773039	15	2.4	14	90	10	50	3	27	12	57	1.49
1774388--1774433	21	2.1	21	84	8	56	13	26	30	30	1.93
1774962--1775053	37	2.4	38	85	5	116	15	10	41	32	1.82
1775991--1776049	29	2.0	29	90	0	91	18	23	33	23	1.97
1786811--1786845	16	2.2	16	94	0	61	37	22	0	40	1.55
1788783--1788816	5	6.4	5	87	12	50	79	0	20	0	0.73
1824660--1824698	20	2.0	20	85	10	53	28	5	12	53	1.60
1831992--1832123	69	1.9	69	92	0	219	27	20	21	30	1.98
1839128--1839525	44	9.0	44	71	8	295	27	26	23	21	1.99
1839114--1839525	89	4.6	89	84	1	513	28	25	24	22	1.99
1839114--1839525	178	2.3	177	91	1	664	28	25	24	22	1.99
1841131--1841197	3	23.0	3	75	6	57	31	1	4	62	1.24
1841131--1841197	18	3.8	18	80	3	66	31	1	4	62	1.24
1842232--1842290	30	2.0	30	100	0	118	30	22	10	37	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1842502--1842538	9	4.1	9	92	0	65	10	40	10	37	1.75
1842504--1842539	18	2.0	18	100	0	72	11	38	11	38	1.76
1846668--1846702	17	2.1	17	89	10	54	45	0	11	42	1.40
1847271--1847412	72	2.0	72	94	0	248	28	18	17	35	1.94
1851857--1851900	19	2.4	18	85	11	54	18	13	9	59	1.60
1853141--1853177	3	12.3	3	88	0	56	2	27	0	70	1.01
1853141--1853178	15	2.5	15	95	0	67	2	26	0	71	1.00
1854690--1854728	16	2.5	15	84	8	51	56	0	0	43	0.99
1870914--1870991	31	2.6	30	82	6	86	25	15	8	50	1.73
1870766--1871094	174	1.9	174	79	5	378	33	14	10	41	1.80
1877458--1877519	15	4.2	14	81	8	61	41	3	8	46	1.49
1899517--1899610	34	2.8	34	80	0	98	32	24	19	23	1.97
1901925--1901993	35	2.0	35	94	0	120	37	11	10	40	1.75
1904277--1904531	128	2.0	128	100	0	510	41	7	7	43	1.60
1904525--1904554	7	4.3	7	95	0	51	53	0	0	46	1.00
1904826--1904875	11	4.3	12	75	14	52	58	0	0	42	0.98
1904826--1904875	12	4.4	11	80	14	57	58	0	0	42	0.98
1904834--1904875	22	2.0	22	90	4	68	57	0	0	42	0.99
1905934--1906297	18	19.6	17	66	17	120	43	10	11	34	1.75
1905918--1906296	37	10.2	37	80	9	348	43	10	11	34	1.76
1905918--1906296	75	5.1	76	77	13	337	43	10	11	34	1.76
1907104--1907163	11	5.2	11	79	15	59	0	20	0	80	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1907114--1907163	6	8.3	6	84	8	66	0	20	0	80	0.72
1907106--1907166	15	4.1	15	85	2	79	0	21	0	78	0.75
1907110--1907163	27	2.0	27	89	7	83	0	20	0	79	0.73
1907104--1907160	24	2.5	23	88	5	80	0	19	0	80	0.71
1907751--1907817	29	2.3	29	82	7	82	43	1	17	37	1.59
1907749--1907847	30	3.4	29	81	4	92	43	2	17	37	1.60
1908166--1908823	76	8.7	76	89	4	874	35	20	16	27	1.94
1908196--1908823	151	4.1	151	88	5	860	35	20	16	27	1.94
1916818--1917079	75	3.6	73	81	11	297	43	11	11	33	1.77
1916811--1917090	38	7.6	37	81	11	299	42	11	11	34	1.77
1916773--1917095	38	8.8	36	78	13	277	43	10	12	33	1.77
1916773--1917094	17	17.5	17	72	18	204	42	10	12	33	1.77
1917840--1917892	13	4.0	14	85	4	67	0	20	0	79	0.74
1917842--1917889	24	2.1	23	88	7	71	0	20	0	79	0.74
1918107--1918144	17	2.2	17	86	9	51	13	10	57	18	1.63
1918480--1918547	30	2.3	29	82	5	82	41	4	20	33	1.72
1921542--1921589	23	2.1	23	92	7	80	10	20	14	54	1.70
1932644--1932706	27	2.3	28	84	10	78	34	9	0	55	1.32
1932849--1932895	21	2.3	20	85	3	58	34	6	2	57	1.36
1936544--1936585	22	1.9	22	90	0	66	11	14	7	66	1.43
1944269--1944433	43	3.8	43	76	13	162	30	27	16	25	1.96
1944269--1944438	86	2.0	86	81	15	201	31	26	16	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1954640--1954766	35	3.6	35	82	1	155	40	33	12	12	1.81
1960047--1960296	42	5.9	42	89	2	351	34	21	22	22	1.97
1960661--1960714	21	2.6	21	90	0	81	3	35	20	40	1.70
1960669--1960726	21	2.8	21	89	0	80	3	36	22	37	1.71
1968438--1968523	44	2.0	44	81	4	102	37	19	17	25	1.94
1969068--1969140	7	10.3	7	86	1	83	41	50	0	8	1.32
1969055--1969135	21	3.9	21	83	0	81	45	44	0	9	1.37
1970194--1970473	114	2.5	114	100	0	560	28	22	17	30	1.97
1970194--1970598	114	3.6	113	88	5	543	27	23	17	30	1.97
1974130--1974186	29	2.0	29	100	0	114	42	10	12	35	1.77
1980765--1980820	23	2.4	23	90	0	94	41	19	25	14	1.89
1990098--1990172	25	3.0	25	76	18	75	25	21	22	30	1.99
1990055--1990168	50	2.3	51	81	3	133	24	19	23	32	1.97
1991363--1991396	13	2.6	13	90	0	50	17	26	38	17	1.92
1994074--1994126	6	8.8	6	97	0	88	28	0	3	67	1.07
2002057--2002099	21	2.0	21	90	0	68	32	18	9	39	1.83
2003492--2003746	127	2.0	127	95	0	456	28	19	12	39	1.89
2031834--2031894	26	2.3	26	91	0	95	60	3	4	31	1.34
2031913--2031952	21	1.9	21	84	0	53	57	2	7	32	1.40
2033380--2033414	14	2.4	15	85	9	54	25	5	14	54	1.62
2034235--2034474	88	2.7	89	86	1	331	27	25	20	25	1.99
2034250--2034560	88	3.5	87	80	5	279	27	25	19	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2034428--2034997	176	3.2	176	84	2	768	27	23	18	30	1.98
2034918--2035102	44	4.2	44	87	5	266	29	25	15	28	1.96
2034525--2035073	88	6.2	88	67	9	307	26	24	18	30	1.98
2034887--2035102	88	2.5	88	84	6	294	29	25	16	28	1.97
2034459--2035102	351	1.8	351	81	4	805	27	23	18	29	1.98
2037433--2037467	10	3.6	10	84	7	54	17	0	2	80	0.84
2037410--2037466	19	2.9	19	84	5	69	17	5	5	71	1.23
2041859--2041919	26	2.3	26	91	0	95	60	3	4	31	1.34
2041938--2041977	21	1.9	21	84	0	53	57	2	7	32	1.40
2043109--2043148	20	2.0	20	85	14	55	12	10	42	35	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13