genome.fa.s10.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397263.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_86.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8461613

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  1  of  18  ( 2155 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1435--1465	16	1.9	16	93	0	53	25	38	22	12	1.90
6456--6535	32	2.5	32	100	0	160	26	17	10	46	1.79
15078--15241	81	2.0	81	97	0	310	37	9	27	25	1.87
21645--21690	19	2.4	19	92	3	74	15	26	2	56	1.50
24089--24186	51	1.9	51	89	0	151	43	16	11	28	1.82
26091--26119	2	14.5	2	100	0	58	51	0	48	0	1.00
27133--27257	51	2.5	49	81	2	133	20	34	38	7	1.80
57854--57900	3	15.7	3	90	0	76	38	34	27	0	1.57
59597--59621	12	2.1	12	100	0	50	44	40	8	8	1.63
65408--65441	2	17.0	2	100	0	68	50	0	0	50	1.00
65444--65476	2	16.5	2	100	0	66	51	0	48	0	1.00
75596--75621	4	6.5	4	100	0	52	23	0	0	76	0.78
107772--107805	16	2.1	16	88	0	50	44	2	0	52	1.16
125485--125524	2	20.0	2	89	0	62	50	5	0	45	1.23
126265--126295	2	15.5	2	93	0	53	48	0	51	0	1.00
140869--140895	2	13.5	2	100	0	54	51	0	0	48	1.00
142326--142427	29	3.5	29	72	17	95	38	11	4	45	1.62
142327--142441	29	4.0	29	72	13	94	36	12	5	46	1.64
144524--144550	5	5.4	5	100	0	54	0	18	0	81	0.69
148435--148476	22	1.9	22	90	0	66	28	7	14	50	1.69
148539--148601	21	3.0	21	69	4	54	46	26	6	20	1.75
152922--152959	2	19.0	2	88	0	58	44	0	50	5	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
157766--157804	6	6.3	6	82	5	51	35	15	28	20	1.93
159920--159961	22	1.9	22	85	0	57	47	9	11	30	1.72
167537--167575	2	19.5	2	94	0	69	0	51	0	48	1.00
194278--194346	28	2.4	28	82	2	84	62	13	1	23	1.39
204408--204475	33	2.1	33	91	0	109	35	30	13	20	1.91
229383--229475	45	2.0	45	85	6	123	46	12	12	27	1.79
244432--244484	21	2.5	21	71	0	52	28	18	18	33	1.95
244483--244548	22	3.0	22	77	4	80	33	10	13	42	1.79
269432--269511	39	2.1	39	95	0	142	30	21	11	37	1.88
273956--274004	21	2.3	20	76	10	53	40	0	14	44	1.45
293736--293808	36	2.0	36	94	0	128	15	32	6	45	1.72
297486--297800	147	2.1	147	88	2	488	17	33	13	35	1.89
302046--302079	16	2.0	18	88	11	54	58	17	0	23	1.38
311404--311428	2	12.5	2	100	0	50	0	48	0	52	1.00
313288--313337	25	2.0	24	92	3	82	34	16	10	40	1.81
316120--316221	48	2.1	49	92	7	172	34	11	10	43	1.76
322839--322870	2	16.0	2	100	0	64	50	0	0	50	1.00
323429--323466	19	2.0	19	100	0	76	36	21	15	26	1.93
331619--331697	39	2.0	39	97	0	149	30	18	24	26	1.98
336693--336747	19	2.7	21	69	11	51	56	5	0	38	1.23
342267--342327	22	2.8	22	68	9	52	47	1	0	50	1.10
344288--344317	7	4.1	7	95	4	51	16	26	26	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
351677--351748	36	2.0	36	94	0	126	20	23	6	48	1.74
352952--352991	21	1.9	21	85	10	55	27	10	0	62	1.27
370506--370547	21	2.0	22	85	4	59	61	2	2	33	1.21
379110--379269	80	2.0	80	90	2	250	35	7	18	38	1.79
380210--380252	22	2.0	22	95	0	77	39	0	27	32	1.57
380631--380657	2	13.5	2	100	0	54	48	0	0	51	1.00
385486--385529	21	2.0	22	83	12	56	52	2	2	43	1.26
385546--385594	24	2.0	25	84	8	64	34	10	0	55	1.34
385550--385619	30	2.3	30	80	0	95	35	5	1	57	1.32
390487--390511	2	12.5	2	100	0	50	52	0	0	48	1.00
409418--409730	173	1.8	174	85	2	450	49	14	15	20	1.79
410145--410196	26	2.0	27	84	3	70	44	1	11	42	1.51
411145--411173	14	2.0	15	93	6	51	75	0	6	17	1.01
413429--413747	177	1.8	176	84	2	433	50	10	18	21	1.75
414121--414173	27	2.0	27	81	7	63	41	1	9	47	1.47
414715--414801	43	2.0	43	100	0	174	39	12	16	32	1.86
425537--425578	19	2.0	20	82	13	50	52	2	2	42	1.27
425688--425735	18	2.5	20	80	6	64	47	2	2	47	1.25
425690--425758	9	7.1	9	72	19	50	49	2	1	46	1.25
429412--429450	20	2.0	19	85	14	53	41	0	28	30	1.57
439247--439280	2	17.0	2	100	0	68	50	0	0	50	1.00
454855--455082	80	2.9	80	86	7	297	17	25	22	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
454832--455082	26	9.4	27	66	7	93	17	24	23	35	1.95
455038--455090	26	2.0	26	85	0	70	13	26	28	32	1.93
455209--455261	25	2.1	25	82	0	61	15	26	26	32	1.95
459986--460028	21	2.0	23	86	9	63	46	13	4	34	1.65
463250--463297	24	2.0	24	88	4	71	29	2	2	66	1.14
464036--464084	17	2.9	17	81	9	55	48	0	2	48	1.12
464409--464437	15	1.9	15	100	0	58	44	0	0	55	0.99
479939--479970	2	15.5	2	93	6	55	3	46	0	50	1.17
489771--489800	2	15.0	2	100	0	60	0	50	0	50	1.00
492412--492436	2	12.5	2	100	0	50	0	48	0	52	1.00
503486--503615	64	2.0	64	96	0	242	34	16	18	30	1.93
515679--515705	13	2.1	13	100	0	54	14	14	7	62	1.51
521871--521908	20	1.9	20	94	0	67	31	10	2	55	1.48
521865--521916	20	2.5	20	76	14	61	32	13	1	51	1.52
525331--525409	38	2.1	39	95	2	142	35	0	26	37	1.57
525717--525741	2	12.5	2	100	0	50	48	0	0	52	1.00
526234--526271	20	1.9	20	88	0	58	44	2	2	50	1.30
527013--527052	21	1.9	21	94	0	71	12	5	30	52	1.60
528769--528999	74	3.1	75	84	5	290	44	13	6	35	1.69
528942--529047	51	2.1	51	85	0	140	43	14	4	37	1.66
529823--529887	32	2.0	32	96	0	121	26	16	10	46	1.80
529957--530007	15	3.5	15	71	13	52	58	7	21	11	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
531966--532293	165	2.0	165	85	3	446	27	25	16	30	1.97
532306--532395	45	2.0	45	93	0	153	31	14	15	38	1.87
534312--534355	21	2.2	20	88	12	63	20	0	0	79	0.73
534538--534567	15	1.9	16	93	6	53	3	3	20	73	1.12
549596--549620	8	3.1	8	100	0	50	48	0	0	52	1.00
567823--568008	51	3.6	51	81	2	194	35	13	10	39	1.80
567872--567957	26	3.4	25	77	9	75	33	15	12	38	1.85
567895--567982	25	3.5	24	76	14	79	36	10	11	42	1.75
578941--578966	2	13.0	2	100	0	52	50	0	50	0	1.00
591531--591564	17	2.0	17	88	0	50	32	17	14	35	1.91
610279--610354	28	2.7	27	80	15	75	39	0	3	56	1.18
611064--611390	171	1.9	169	85	3	451	20	15	13	50	1.77
619961--619985	3	8.3	3	100	0	50	0	32	0	68	0.90
634598--634672	34	2.2	34	97	2	141	29	18	13	38	1.89
651943--652022	28	2.7	29	77	17	85	37	0	1	61	1.04
651943--652031	29	3.0	28	79	14	99	35	0	1	62	1.02
652109--652158	24	2.1	24	88	7	75	54	0	2	44	1.11
652114--652168	24	2.3	23	81	9	58	56	0	1	41	1.10
665949--666072	30	4.1	30	76	8	117	29	33	10	26	1.90
671760--671792	2	17.0	2	93	6	59	51	0	48	0	1.00
675068--675639	303	1.9	310	85	4	820	37	22	14	25	1.92
691554--691616	30	2.1	30	96	0	117	14	31	20	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
698178--698208	2	15.5	2	100	0	62	51	0	0	48	1.00
720176--720211	18	2.0	18	88	0	54	19	27	5	47	1.72
727654--727678	3	8.3	3	100	0	50	68	0	32	0	0.90
729380--729422	18	2.4	18	84	0	50	11	34	20	32	1.89
729380--729409	6	5.0	6	91	0	51	16	33	20	30	1.94
733591--733737	78	1.9	78	82	0	186	39	12	7	40	1.71
735357--735391	18	1.9	18	100	0	70	42	22	5	28	1.76
735555--735580	2	13.0	2	100	0	52	50	0	0	50	1.00
737391--737428	3	13.0	3	88	5	60	65	2	0	31	1.06
754850--754888	19	2.1	20	86	13	57	48	0	0	51	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18