genome.fa.s10.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397263.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_86.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8461613

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  2  of  18  ( 2155 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
756715--756749	7	5.0	7	92	0	61	28	31	14	25	1.95
765230--765354	63	2.0	63	95	0	223	14	12	18	55	1.69
767900--767971	37	1.9	37	91	0	117	36	9	13	40	1.78
784935--785061	42	3.0	42	100	0	254	18	25	9	45	1.80
804642--804803	64	2.6	62	78	5	168	41	11	4	42	1.62
807489--807527	19	2.1	18	85	4	51	58	7	2	30	1.39
807540--807674	46	2.9	46	100	0	270	45	10	4	39	1.58
815381--815418	12	3.2	12	88	7	51	15	71	0	13	1.16
819384--819434	22	2.3	22	96	0	93	19	11	17	50	1.76
826493--826531	19	2.1	19	100	0	78	64	15	5	15	1.46
833634--833698	21	3.1	21	82	8	62	30	24	15	29	1.96
833662--833709	21	2.3	21	85	0	60	33	35	10	20	1.87
835136--835183	25	1.9	25	82	0	60	62	0	25	12	1.30
852089--852127	4	9.8	4	88	0	51	48	7	0	43	1.31
852089--852127	10	3.9	10	89	0	51	48	7	0	43	1.31
852089--852127	6	6.5	6	90	0	51	48	7	0	43	1.31
856024--856059	18	2.0	18	88	0	54	63	0	22	13	1.29
856544--856570	3	9.0	3	100	0	54	0	33	0	66	0.92
862208--862265	29	2.0	29	100	0	116	17	20	24	37	1.93
862691--862726	5	7.6	5	96	3	58	0	63	0	36	0.94
880277--880310	2	17.0	2	93	0	59	0	52	0	47	1.00
880835--880861	2	13.5	2	100	0	54	51	0	48	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
882782--882820	17	2.3	18	82	13	55	33	0	0	66	0.92
883963--884017	21	2.4	23	79	8	60	52	0	3	43	1.18
893590--893666	34	2.2	36	81	4	95	45	9	16	28	1.78
894178--894219	21	2.0	21	100	0	84	23	33	9	33	1.87
901562--901597	16	2.2	16	90	0	54	41	13	13	30	1.84
908008--908063	26	2.1	27	90	3	87	35	5	3	55	1.40
910344--910389	2	23.0	2	100	0	92	50	0	0	50	1.00
915953--916048	26	3.9	27	73	17	82	41	5	10	42	1.61
915984--916050	26	2.5	27	82	2	91	38	8	10	41	1.71
916470--916498	14	2.0	15	93	6	51	24	6	6	62	1.45
925582--925668	43	2.0	43	97	0	165	19	20	39	20	1.93
929033--929089	22	2.7	22	79	12	57	50	0	5	43	1.24
936911--937097	93	2.0	93	100	0	374	39	20	10	28	1.86
939193--939231	7	5.9	7	88	11	64	28	28	15	28	1.96
939193--939229	12	2.9	12	92	8	56	29	27	16	27	1.97
945693--945930	130	1.8	129	81	8	297	39	11	14	34	1.83
945863--946139	111	2.5	113	81	4	303	42	10	11	35	1.75
945889--946139	112	2.2	110	81	6	281	44	9	11	35	1.72
957824--958004	94	1.9	95	87	1	265	39	9	17	33	1.82
964118--964153	16	2.4	16	90	9	58	27	13	2	55	1.52
969248--969468	111	2.0	111	82	4	268	44	15	7	32	1.74
979091--979116	4	6.5	4	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1006855--1006896	20	2.1	20	100	0	84	19	35	16	28	1.93
1023946--1024042	43	2.3	43	90	1	160	45	21	18	14	1.85
1026513--1026545	17	1.9	17	88	11	50	66	6	3	24	1.28
1045278--1045317	21	1.9	21	89	0	62	52	2	0	45	1.14
1045278--1045325	21	2.2	21	85	3	60	54	4	0	41	1.20
1045781--1045837	20	2.9	19	75	17	62	47	1	5	45	1.35
1045815--1045848	16	2.0	18	88	11	54	41	2	8	47	1.50
1045870--1046004	70	1.9	69	80	7	157	46	8	8	36	1.65
1050769--1050815	16	3.1	15	78	12	51	53	0	0	46	1.00
1052252--1052294	19	2.3	19	79	0	50	44	0	4	51	1.22
1062379--1062410	12	2.6	12	95	5	55	40	6	0	53	1.26
1065078--1065108	15	2.0	16	93	6	55	38	6	3	51	1.44
1068157--1068205	22	2.4	20	83	10	55	63	0	0	36	0.95
1072167--1072222	20	2.8	20	76	10	60	46	0	5	48	1.25
1080406--1080431	2	13.0	2	100	0	52	0	50	0	50	1.00
1084167--1084212	19	2.4	19	81	3	56	41	0	0	58	0.98
1101543--1101572	2	15.0	2	100	0	60	50	0	0	50	1.00
1111372--1111759	194	2.0	193	92	1	643	31	14	17	36	1.89
1118271--1118326	6	9.3	6	92	0	76	17	5	33	42	1.72
1125567--1125611	22	1.9	24	82	13	58	51	4	6	37	1.49
1126133--1126164	16	1.9	17	93	6	57	56	6	0	37	1.25
1163510--1163577	30	2.3	31	85	7	88	63	7	5	23	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1166438--1166463	13	2.0	13	100	0	52	30	0	38	30	1.58
1177719--1177757	19	2.0	20	85	5	53	25	20	5	48	1.70
1178679--1178752	30	2.5	31	82	8	82	56	0	0	43	0.99
1187731--1187792	30	2.0	30	81	3	70	41	0	12	45	1.42
1189181--1189230	21	2.4	21	78	18	59	54	0	0	46	1.00
1189752--1189780	15	2.0	15	93	6	51	0	10	0	89	0.48
1206577--1206620	18	2.4	18	96	0	79	38	6	0	54	1.27
1208703--1208742	21	1.9	21	100	0	80	40	25	15	20	1.90
1208704--1208750	21	2.2	21	92	0	76	42	25	10	21	1.85
1211475--1211519	18	2.5	17	80	19	56	57	0	31	11	1.33
1212791--1212820	15	2.0	15	100	0	60	46	0	13	40	1.43
1216444--1216476	7	4.9	7	92	3	50	30	6	0	63	1.18
1220487--1220608	27	4.5	27	80	2	127	48	7	2	41	1.44
1220487--1220615	54	2.4	54	80	3	145	48	8	2	41	1.46
1221710--1221770	29	2.1	29	93	0	104	39	11	11	37	1.78
1224341--1224370	2	15.0	2	100	0	60	0	50	0	50	1.00
1228388--1228438	25	2.0	25	92	0	84	13	27	11	47	1.78
1229424--1229450	4	6.8	4	100	0	54	25	0	22	51	1.48
1232372--1232398	2	13.5	2	100	0	54	51	0	48	0	1.00
1238311--1238368	15	3.7	16	73	17	50	27	3	3	65	1.25
1238754--1238785	17	1.9	17	93	6	57	34	0	0	65	0.93
1241552--1241587	19	1.9	18	88	5	54	58	0	13	27	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1245426--1245468	15	2.8	15	86	10	52	37	4	2	55	1.33
1256310--1256344	18	1.9	18	88	0	52	65	5	2	25	1.28
1264661--1264690	3	10.0	3	100	0	60	0	33	0	66	0.92
1280543--1280612	28	2.4	29	85	4	97	40	0	0	60	0.97
1287844--1287885	21	2.0	21	85	0	57	47	0	4	47	1.23
1291337--1291369	17	1.9	17	88	11	50	54	9	6	30	1.56
1317509--1317578	37	2.0	35	83	13	90	51	10	14	24	1.72
1321458--1321487	2	15.0	2	100	0	60	50	0	0	50	1.00
1333868--1333964	36	2.7	36	90	0	149	24	27	14	32	1.94
1335503--1335579	36	2.1	36	87	0	109	27	31	11	29	1.92
1344411--1344452	22	1.9	22	95	0	75	35	4	4	54	1.42
1344777--1344840	21	3.0	22	80	17	73	48	0	0	51	1.00
1344777--1344826	20	2.5	21	81	12	52	48	0	0	52	1.00
1344819--1344859	21	2.0	21	85	9	57	65	0	0	34	0.93
1346414--1346458	22	2.1	22	84	12	58	28	0	8	62	1.25
1356509--1356546	17	2.2	17	86	9	51	47	0	2	50	1.15
1385080--1385141	26	2.2	29	77	13	76	27	3	8	61	1.40
1395258--1395294	19	1.9	19	88	0	56	8	16	5	70	1.30
1398399--1398429	2	15.5	2	100	0	62	0	51	0	48	1.00
1418300--1418440	27	5.2	27	71	0	84	45	12	4	37	1.62
1418285--1418485	81	2.5	79	81	5	208	41	10	4	42	1.62
1418386--1418483	52	1.9	51	82	2	124	42	10	4	42	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1418565--1418604	20	1.9	22	90	10	66	47	0	0	52	1.00
1418534--1418618	30	2.8	30	78	7	91	52	2	0	44	1.13
1419510--1419562	25	2.0	27	82	7	65	45	3	5	45	1.45
1423615--1423654	10	4.0	10	86	0	53	75	5	0	20	0.99
1440678--1440737	30	1.9	32	83	6	79	50	1	0	48	1.11
1442129--1442153	2	12.5	2	100	0	50	0	52	0	48	1.00
1459450--1459506	27	2.1	28	83	9	73	59	1	3	35	1.25
1464095--1464137	2	21.5	2	90	0	50	0	9	41	48	1.35
1468544--1469478	261	3.6	260	78	5	916	30	19	15	34	1.93
1469311--1469809	267	1.9	267	84	2	671	28	20	14	36	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18