genome.fa.s10.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397263.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_86.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8461613

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  10  of  18  ( 2155 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4654981--4655052	4	18.0	4	82	0	90	54	22	1	22	1.53
4656830--4656980	81	1.9	81	88	0	230	35	14	9	40	1.79
4678251--4678295	22	2.0	22	95	0	81	17	6	40	35	1.76
4682380--4682446	28	2.4	28	100	0	134	50	20	5	22	1.69
4683332--4683426	37	2.6	37	76	8	104	29	18	31	20	1.96
4688342--4688388	21	2.3	21	81	3	60	29	0	8	61	1.25
4691944--4692189	80	3.1	79	87	3	323	32	9	24	34	1.87
4697530--4697555	7	3.7	7	100	0	52	88	0	0	11	0.52
4699075--4699113	20	1.9	21	89	5	62	64	5	0	30	1.15
4701545--4701569	2	12.5	2	100	0	50	48	0	0	52	1.00
4704072--4704105	17	1.9	18	88	5	52	47	14	26	11	1.79
4717505--4717546	20	2.0	21	86	13	61	21	4	4	69	1.26
4724214--4725176	351	2.8	346	84	5	1202	41	7	6	44	1.58
4726299--4726339	15	2.7	15	80	0	55	46	4	0	48	1.23
4727184--4727228	23	2.0	23	82	8	56	28	11	6	53	1.61
4727813--4727851	20	2.0	20	85	10	53	51	2	2	43	1.29
4733012--4733040	2	14.5	2	100	0	58	51	0	0	48	1.00
4741197--4741250	2	27.0	2	92	7	92	0	48	1	50	1.11
4741197--4741248	23	2.3	23	96	0	95	0	48	1	50	1.12
4747203--4747252	17	3.1	16	80	11	57	60	8	2	30	1.37
4761614--4761651	20	1.9	20	88	0	58	55	15	0	28	1.41
4785487--4785544	26	2.2	26	96	0	107	39	12	24	24	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4789909--4789951	17	2.4	19	80	11	54	20	2	0	76	0.89
4789911--4789951	18	2.3	18	87	4	57	19	2	0	78	0.87
4801174--4801367	65	3.0	65	98	0	370	29	12	12	44	1.79
4806818--4806846	15	2.0	15	93	6	51	55	3	20	20	1.58
4818830--4818963	60	2.2	59	84	6	169	27	19	33	19	1.96
4831873--4831935	24	2.6	24	97	0	117	38	15	15	30	1.89
4831983--4832051	29	2.2	32	72	15	81	47	5	8	37	1.58
4831990--4832061	29	2.6	29	88	4	103	40	6	9	43	1.65
4833830--4833872	18	2.4	19	88	7	63	55	0	2	41	1.12
4833851--4833901	26	1.9	27	84	4	68	52	0	3	43	1.19
4835133--4835517	213	1.8	214	88	4	598	34	12	12	40	1.81
4840222--4840256	15	2.3	15	90	0	52	25	14	5	54	1.62
4844051--4844083	17	1.9	17	93	0	57	54	0	0	45	0.99
4844226--4844258	16	2.1	16	94	0	57	45	0	0	54	0.99
4844316--4844361	5	9.6	5	84	15	62	41	2	0	56	1.11
4844316--4844361	24	1.9	24	91	8	76	41	2	0	56	1.11
4844224--4844421	97	2.0	99	81	11	237	42	5	4	47	1.45
4844410--4844760	185	1.9	185	90	3	567	37	7	4	50	1.51
4845322--4845855	222	2.4	222	80	7	563	47	24	6	20	1.74
4848611--4848706	29	3.3	29	80	0	111	22	23	16	36	1.94
4852906--4852980	16	4.7	16	70	18	50	60	0	0	40	0.97
4852906--4852980	32	2.3	34	78	17	88	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4853146--4853189	13	3.4	13	87	0	70	20	0	0	79	0.73
4853146--4853228	26	3.1	26	84	8	105	26	0	0	73	0.83
4853156--4853228	13	5.5	13	77	6	65	28	0	0	71	0.87
4853157--4853247	40	2.2	41	79	9	96	31	0	1	67	0.98
4854671--4854700	15	2.1	14	93	6	51	40	16	0	43	1.48
4855973--4856011	19	2.1	19	85	0	51	51	0	0	48	1.00
4859163--4859203	19	2.4	16	81	18	55	58	0	9	31	1.31
4859168--4859206	18	2.1	19	95	4	71	64	0	12	23	1.28
4866877--4866934	24	2.5	23	71	20	57	58	10	3	27	1.47
4875517--4875543	2	13.5	2	100	0	54	48	0	0	51	1.00
4883777--4883803	2	13.5	2	100	0	54	51	0	0	48	1.00
4885425--4885615	35	5.5	35	73	7	133	37	6	10	45	1.66
4885418--4885613	106	1.9	102	83	6	250	36	6	11	45	1.66
4896884--4896916	2	16.5	2	100	0	66	0	0	48	51	1.00
4910202--4910233	2	15.5	2	93	6	55	50	3	0	46	1.17
4921806--4921839	2	17.0	2	87	0	50	50	2	44	2	1.32
4928443--4928472	8	3.8	8	95	0	51	0	30	16	53	1.44
4949429--4949459	2	15.5	2	100	0	62	51	0	0	48	1.00
4950553--4950582	2	15.0	2	100	0	60	50	0	0	50	1.00
4951624--4951666	2	22.0	2	95	4	79	48	0	0	51	1.00
4952455--4952498	23	1.9	23	95	0	79	40	4	22	31	1.74
4959877--4959902	2	13.0	2	100	0	52	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4969686--4969740	23	2.4	23	81	0	65	23	9	40	27	1.85
4969845--4969925	23	3.6	23	77	12	87	33	13	29	23	1.93
4970063--4970173	23	4.8	23	78	6	91	26	14	34	25	1.94
4969892--4970122	104	2.2	104	78	0	239	30	12	31	25	1.92
4970591--4970654	32	2.0	32	93	0	110	29	7	26	35	1.85
4970820--4971010	31	6.5	31	78	10	148	30	15	17	35	1.92
4970845--4970896	22	2.4	22	90	0	77	30	17	17	34	1.93
4970821--4970927	53	2.0	53	85	0	142	29	14	18	36	1.91
4972506--4972778	151	1.8	151	81	1	341	32	15	17	34	1.91
4975009--4975765	152	5.0	151	80	3	781	33	24	16	25	1.96
4975013--4975765	76	10.0	76	79	4	709	32	24	16	25	1.96
4989146--4989310	69	2.4	69	88	2	242	34	26	10	29	1.89
4989210--4989445	92	2.6	89	77	9	240	33	24	10	31	1.89
4989146--4989528	23	16.7	23	68	4	173	33	24	11	31	1.90
4989826--4989881	26	2.1	27	83	9	71	50	5	14	30	1.65
4993450--4993505	23	2.4	23	72	0	58	30	30	14	25	1.95
4993361--4993724	110	3.3	110	81	5	414	34	29	10	24	1.90
4993670--4993742	23	3.2	23	78	0	83	41	30	4	24	1.74
4993676--4993770	46	2.1	46	80	4	102	38	28	7	25	1.82
5002487--5002518	16	1.9	17	93	6	57	71	0	21	6	1.07
5016939--5016980	18	2.4	17	81	18	50	57	7	0	35	1.26
5023513--5023640	68	1.9	68	80	3	150	31	12	14	42	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5024197--5024231	12	2.9	12	91	0	52	14	31	11	42	1.81
5029537--5029565	13	2.1	14	93	6	51	51	0	13	34	1.42
5045115--5045191	39	2.0	39	97	0	145	29	9	12	48	1.73
5062062--5062208	80	1.9	78	81	5	179	40	22	14	22	1.91
5089137--5089166	15	2.0	15	93	0	51	43	6	6	43	1.57
5088492--5089269	342	2.2	345	83	6	975	44	6	7	40	1.60
5098550--5098584	17	2.1	17	89	5	54	60	8	5	25	1.49
5099212--5099245	10	3.3	10	88	8	50	70	5	5	17	1.28
5108979--5109068	41	2.2	41	100	0	180	36	14	16	32	1.89
5116590--5116616	14	1.9	14	100	0	54	59	11	0	29	1.32
5117441--5117490	22	2.3	22	89	0	73	24	32	10	34	1.88
5133937--5134148	113	1.9	113	91	0	352	41	11	20	26	1.87
5138376--5138436	22	3.0	21	72	22	58	22	6	1	68	1.21
5138980--5139056	39	2.0	40	87	12	115	38	0	9	51	1.34
5143815--5143997	97	1.9	97	80	4	217	34	11	12	41	1.78
5150204--5150307	52	2.0	52	100	0	208	40	11	11	36	1.78
5152698--5152764	34	2.0	34	84	0	89	34	22	16	26	1.95
5164845--5164891	19	2.5	19	79	10	51	76	2	17	4	1.04
5177612--5177757	38	4.0	35	72	17	118	22	9	27	40	1.85
5177647--5177776	38	3.4	38	71	18	117	23	10	25	41	1.85
5184017--5184109	36	2.6	36	91	5	145	36	24	18	20	1.95
5185098--5185232	33	4.1	33	80	3	155	32	14	11	41	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5185984--5186017	18	1.9	18	88	5	52	32	0	29	38	1.58
5186142--5186264	25	4.9	26	70	9	69	37	16	20	26	1.93
5186142--5186264	50	2.5	50	78	5	115	37	16	20	26	1.93
5186250--5186337	44	2.0	44	84	0	113	37	13	20	28	1.91
5189107--5189135	15	2.0	15	93	6	51	13	6	20	58	1.58
5191957--5192129	67	2.6	67	75	5	159	33	21	16	28	1.95
5201243--5201276	6	5.7	6	89	0	50	82	2	2	11	0.89
5208817--5208871	28	2.0	28	85	0	74	32	18	12	36	1.88
5208816--5208900	28	3.0	28	77	0	71	32	16	15	35	1.90
5219067--5219098	13	2.5	13	95	5	57	18	15	0	65	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18