genome.fa.s10.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397263.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_86.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8461613

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  8  of  18  ( 2155 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3843016--3843042	2	13.5	2	100	0	54	51	0	48	0	1.00
3844933--3844961	2	14.5	2	100	0	58	51	0	0	48	1.00
3857976--3858006	16	1.9	16	93	0	53	58	6	6	29	1.48
3865425--3865480	22	2.4	24	85	8	80	39	0	0	60	0.97
3865413--3865475	30	2.0	30	84	6	81	39	0	0	60	0.97
3865453--3865494	22	2.0	21	85	4	57	38	2	0	59	1.10
3867715--3867754	19	2.0	21	85	9	57	57	5	0	37	1.21
3871874--3871900	2	13.5	2	100	0	54	51	0	0	48	1.00
3876272--3877089	441	1.9	431	90	3	1314	33	17	15	33	1.92
3877288--3877353	26	2.6	25	78	9	62	27	21	19	31	1.97
3883808--3883848	20	2.0	20	85	0	55	51	2	7	39	1.43
3884287--3884428	74	1.9	74	91	0	230	40	4	7	47	1.54
3884520--3884553	13	2.5	13	90	4	50	41	0	2	55	1.15
3884526--3884596	20	3.8	19	76	14	76	38	0	2	59	1.12
3884710--3884742	14	2.4	14	90	5	50	39	9	0	51	1.34
3886008--3886069	17	3.4	17	70	22	54	64	3	6	25	1.33
3897101--3897125	2	12.5	2	100	0	50	52	0	0	48	1.00
3897972--3898059	40	2.2	41	84	11	119	51	2	2	44	1.26
3898026--3898209	94	2.0	93	82	9	216	55	4	2	37	1.34
3898278--3898330	15	3.7	15	69	25	51	49	9	0	41	1.35
3898288--3898345	27	2.2	27	84	9	75	51	6	0	41	1.28
3898316--3898396	42	1.9	43	85	12	114	62	4	0	32	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3898100--3898663	152	3.6	150	83	7	623	53	4	2	39	1.35
3898377--3898471	39	2.4	39	85	5	120	51	2	0	46	1.12
3898402--3898467	24	2.8	25	80	15	70	48	3	0	48	1.17
3898442--3898498	27	2.1	28	90	3	89	49	5	1	43	1.35
3898688--3898764	28	2.8	27	73	13	68	54	1	2	41	1.22
3898568--3898760	107	1.8	105	85	5	273	53	3	3	39	1.34
3898919--3898964	21	2.2	21	84	0	56	63	0	2	34	1.07
3898274--3899066	419	1.9	412	84	5	1069	53	3	2	40	1.31
3898949--3899187	40	6.1	40	71	18	164	53	3	0	42	1.23
3897975--3899234	573	2.2	568	88	5	1868	54	3	2	39	1.31
3898975--3899046	25	3.0	25	70	15	62	52	2	0	44	1.15
3899160--3899222	27	2.6	22	76	21	72	46	3	1	49	1.27
3899170--3899228	27	2.1	28	90	3	93	50	3	1	44	1.28
3898673--3899356	151	4.4	152	83	7	754	53	2	2	41	1.30
3899366--3899430	19	3.2	20	86	10	87	50	0	0	49	1.00
3902612--3902648	2	18.5	2	94	0	65	45	0	2	51	1.15
3916450--3916488	18	2.0	20	85	14	55	23	15	15	46	1.83
3918122--3918158	17	2.2	18	85	9	51	16	5	10	67	1.38
3919439--3919463	11	2.3	11	100	0	50	76	16	0	8	1.02
3923499--3923547	14	3.8	13	84	12	57	32	0	8	59	1.27
3936327--3936360	13	2.6	13	90	0	50	38	0	0	61	0.96
3951223--3951284	30	2.1	30	87	6	90	46	9	6	37	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3951230--3951309	30	2.7	30	80	7	83	53	8	6	31	1.56
3953055--3953102	22	2.2	22	100	0	96	41	25	0	33	1.55
3953773--3953798	2	13.0	2	100	0	52	50	0	0	50	1.00
3955615--3955701	20	4.2	20	74	18	61	34	3	2	59	1.27
3955967--3956223	141	1.8	142	84	5	358	33	12	15	38	1.85
3979955--3979999	2	23.0	2	82	13	58	48	4	0	46	1.22
3982047--3982123	2	38.5	2	100	0	154	50	0	0	49	1.00
3986604--3986668	32	2.0	32	90	0	103	53	15	3	27	1.56
3995934--3995962	2	14.5	2	100	0	58	48	0	0	51	1.00
3996231--3996271	2	20.5	2	100	0	82	51	0	0	48	1.00
3997340--3997479	69	2.0	69	90	4	221	54	5	6	34	1.48
4000619--4000643	12	2.1	12	100	0	50	68	0	0	32	0.90
4006151--4006240	45	2.0	45	97	0	171	35	7	8	47	1.64
4009139--4009195	30	1.9	30	89	7	89	38	17	14	29	1.89
4010502--4010534	17	1.9	17	100	0	66	48	3	0	48	1.17
4010524--4010561	14	2.7	14	84	12	51	73	5	2	18	1.14
4018483--4018550	33	2.0	33	82	5	82	41	2	7	48	1.46
4019864--4019916	28	1.9	29	81	11	67	52	0	3	43	1.19
4027600--4027630	14	2.2	14	94	0	53	67	0	6	25	1.14
4030721--4030772	24	2.2	24	96	0	95	51	19	0	28	1.47
4042885--4042917	15	2.2	15	89	10	50	69	9	15	6	1.34
4043772--4044056	78	3.7	78	89	0	417	36	12	17	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4050694--4050725	8	4.0	8	91	0	55	75	9	0	15	1.05
4053134--4054021	488	1.8	490	79	5	1044	47	6	9	36	1.61
4058058--4058086	11	2.7	11	94	5	51	55	0	0	44	0.99
4058853--4058937	42	2.0	42	100	0	170	21	28	16	34	1.95
4065582--4065626	19	2.3	20	85	11	67	48	0	31	20	1.49
4069544--4069619	27	2.8	28	84	6	102	31	11	15	40	1.84
4069478--4069629	27	5.8	27	73	10	84	30	11	18	39	1.87
4069613--4069764	81	1.9	81	82	5	191	28	11	16	43	1.83
4069624--4069760	27	5.1	26	72	11	89	27	12	17	42	1.85
4075317--4075410	29	3.2	30	80	8	104	34	7	7	51	1.58
4075356--4075418	29	2.1	30	82	2	74	33	7	6	52	1.56
4077176--4077226	22	2.3	22	100	0	102	29	7	19	43	1.79
4080813--4080886	26	2.8	26	79	8	69	17	31	28	22	1.97
4088761--4088798	14	2.8	14	88	11	53	0	0	78	21	0.74
4092620--4092650	14	2.1	15	94	5	55	67	0	0	32	0.91
4092616--4092691	33	2.4	34	87	10	108	68	1	2	27	1.11
4092730--4092810	33	2.5	32	81	4	81	65	1	4	28	1.21
4093027--4093068	15	2.8	15	88	0	57	40	19	2	38	1.64
4099425--4099463	17	2.2	18	86	4	53	41	7	2	48	1.45
4101140--4101262	35	3.5	35	82	6	158	43	11	8	36	1.72
4103793--4103831	20	1.9	21	84	5	53	28	2	25	43	1.68
4108862--4108932	27	2.5	28	88	4	99	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4109500--4109562	30	2.2	27	78	10	72	63	0	0	36	0.95
4112585--4112674	45	2.0	45	82	4	110	47	10	8	33	1.68
4131074--4131303	49	4.7	49	77	2	219	34	22	16	27	1.95
4131076--4131419	99	3.5	99	77	3	246	34	20	16	27	1.95
4131076--4131434	50	7.2	50	75	6	264	34	20	16	28	1.94
4131438--4131600	49	3.3	50	77	6	147	34	20	14	31	1.92
4135040--4135204	79	2.1	79	82	2	197	43	10	10	35	1.74
4135163--4135274	57	2.0	57	85	3	154	45	12	6	35	1.67
4135447--4135479	16	2.1	16	88	5	50	45	9	39	6	1.61
4135575--4135628	28	1.9	28	88	0	81	50	11	22	16	1.77
4135812--4136237	50	8.7	49	71	11	214	36	19	14	30	1.91
4135989--4136233	98	2.5	100	78	6	239	35	19	14	31	1.91
4136205--4136266	33	1.9	33	93	3	108	41	22	14	20	1.89
4136523--4136548	4	6.5	4	100	0	52	76	0	0	23	0.78
4137593--4137649	24	2.4	24	81	0	60	19	5	22	52	1.66
4138087--4138553	251	1.9	250	88	1	711	46	3	9	40	1.55
4141087--4141210	32	3.7	32	76	9	113	34	25	11	29	1.90
4141741--4141803	21	2.9	22	79	6	67	55	12	7	23	1.63
4141791--4141831	21	2.0	21	90	0	64	46	24	2	26	1.65
4141903--4141990	21	4.1	21	85	4	106	47	18	6	27	1.73
4148601--4148647	21	2.2	22	88	3	69	57	8	4	29	1.48
4148732--4148832	21	4.8	22	83	2	111	47	16	8	26	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4152941--4152977	13	2.8	13	91	4	56	54	16	0	29	1.43
4153014--4153109	28	3.5	28	67	16	76	38	10	17	33	1.84
4153727--4153752	12	2.2	12	100	0	52	19	23	7	50	1.73
4155731--4155792	14	4.3	14	78	8	61	14	27	3	54	1.55
4155698--4155792	44	2.1	45	82	1	111	14	30	2	52	1.53
4159974--4160200	85	2.7	84	86	1	283	44	14	1	40	1.53
4160123--4160156	13	2.6	13	86	13	52	44	17	0	38	1.49
4160003--4160296	85	3.5	85	83	5	332	43	14	1	40	1.54
4161083--4161128	24	1.9	24	90	0	74	30	23	6	39	1.80
4161178--4161222	20	2.2	20	84	0	63	31	40	13	15	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18