genome.fa.s10.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397263.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_86.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8461613

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  12  of  18  ( 2155 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5581930--5582065	45	3.0	45	78	4	137	25	13	20	40	1.89
5583085--5583132	18	2.5	19	78	15	55	70	6	16	6	1.28
5595025--5595091	35	1.9	35	84	6	91	34	20	13	31	1.92
5604259--5604309	27	1.9	26	88	4	75	50	1	0	47	1.12
5605399--5605438	16	2.5	16	91	0	62	40	0	10	50	1.36
5605398--5605438	20	2.0	20	100	0	82	41	0	9	48	1.36
5605405--5605438	10	3.4	10	83	0	50	38	0	11	50	1.39
5608596--5608621	6	4.3	6	100	0	52	15	0	69	15	1.20
5611962--5611986	13	1.9	13	100	0	50	68	0	0	32	0.90
5614465--5614541	7	11.3	7	75	12	54	75	0	0	24	0.81
5614462--5614542	15	5.5	15	76	14	64	72	0	0	27	0.84
5614453--5614534	33	2.5	35	86	13	113	71	0	0	28	0.86
5614472--5614534	13	4.9	13	75	14	60	74	0	0	25	0.82
5614567--5614653	33	2.6	33	78	10	86	67	0	3	28	1.06
5614458--5614654	88	2.2	87	76	13	206	67	0	3	29	1.06
5614819--5614874	15	3.8	14	84	11	76	35	25	5	33	1.79
5614817--5614874	30	1.9	30	96	0	107	34	25	6	32	1.83
5618845--5618896	22	2.5	22	75	15	56	50	1	1	46	1.23
5619595--5619634	21	1.9	21	85	10	55	60	2	10	27	1.42
5622622--5622731	34	3.2	34	88	0	157	20	17	29	33	1.95
5622802--5622866	34	1.9	34	90	0	103	21	16	24	36	1.94
5625410--5625438	2	14.5	2	100	0	58	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5625442--5625482	2	20.5	2	100	0	82	51	0	48	0	1.00
5639347--5639514	80	2.1	80	85	4	223	34	23	10	31	1.88
5640580--5640627	20	2.6	17	79	17	60	50	14	4	31	1.62
5640587--5640627	20	2.0	20	100	0	82	51	14	4	29	1.63
5642507--5642627	37	3.3	37	83	2	145	29	21	23	24	1.99
5653108--5653159	20	2.7	20	72	21	56	51	0	0	48	1.00
5659152--5659209	25	2.3	25	87	0	80	51	22	8	17	1.72
5659174--5659425	25	10.1	25	73	7	136	42	23	13	21	1.87
5659206--5659413	75	2.8	75	74	7	206	42	22	13	21	1.88
5659167--5659425	50	5.2	49	75	4	198	42	23	13	21	1.87
5660984--5661028	17	2.7	16	86	13	56	37	0	17	44	1.49
5662363--5662397	15	2.2	16	90	5	54	17	14	11	57	1.66
5664800--5664848	18	2.6	19	83	9	64	38	4	2	55	1.31
5705210--5705888	360	1.9	357	80	6	800	34	14	12	39	1.83
5724497--5724546	20	2.5	21	93	6	79	52	10	12	26	1.70
5737790--5737968	68	2.6	68	83	1	225	32	12	22	32	1.91
5740560--5740584	2	12.5	2	100	0	50	48	0	0	52	1.00
5741161--5741194	2	17.0	2	93	0	59	52	0	0	47	1.00
5742838--5742864	2	13.5	2	100	0	54	51	0	48	0	1.00
5749303--5749340	14	2.6	15	87	8	60	31	0	5	63	1.17
5751275--5751388	18	6.8	18	67	23	54	39	0	0	60	0.97
5751279--5751388	26	4.2	25	73	17	80	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5751274--5751392	27	3.6	33	70	25	90	37	0	0	62	0.96
5751275--5751416	62	2.2	65	82	6	173	40	0	0	59	0.97
5755514--5755557	23	1.9	23	85	0	61	50	2	0	47	1.13
5775116--5775146	16	1.9	16	93	0	53	61	25	0	12	1.32
5777886--5777972	34	2.6	32	80	10	84	28	3	2	65	1.21
5777999--5778080	15	5.6	14	75	17	62	26	0	0	73	0.84
5778006--5778088	33	2.5	33	85	14	111	27	0	0	72	0.85
5777946--5778082	55	2.6	53	81	15	144	29	1	0	67	1.04
5780122--5780166	22	2.0	22	95	0	81	42	24	17	15	1.88
5789075--5789148	35	2.1	35	87	2	105	58	13	0	28	1.36
5793878--5794197	31	10.6	31	80	5	332	38	21	17	22	1.93
5793909--5793956	23	2.1	23	92	0	78	33	20	20	25	1.97
5793878--5794049	54	3.0	54	76	12	191	37	20	18	23	1.94
5794909--5794986	22	3.5	22	64	3	57	25	29	17	26	1.98
5794937--5795173	23	10.2	23	64	12	72	26	32	15	26	1.95
5794910--5795103	47	4.2	45	81	5	201	26	30	16	26	1.97
5794937--5795269	162	2.1	161	81	6	388	26	31	15	26	1.96
5795021--5795173	70	2.2	70	87	0	225	25	33	15	25	1.95
5795099--5795292	92	2.1	93	86	3	266	25	30	16	27	1.97
5795099--5795292	47	4.2	47	86	5	259	25	30	16	27	1.97
5799115--5799191	18	4.4	18	69	18	63	42	3	6	46	1.48
5799115--5799215	52	2.0	50	80	12	111	45	3	4	45	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5802330--5802354	2	12.5	2	100	0	50	52	0	0	48	1.00
5805962--5805995	15	2.2	16	94	5	61	35	8	17	38	1.81
5806052--5806492	23	19.2	23	70	3	179	33	9	23	32	1.87
5806091--5806487	69	5.8	69	80	4	354	33	9	23	33	1.88
5809502--5809535	12	2.8	12	81	0	50	32	2	0	64	1.08
5809914--5809956	12	3.5	12	78	6	50	44	0	2	53	1.13
5810826--5810934	31	3.7	30	70	20	97	66	0	1	31	1.09
5810829--5810939	26	4.2	25	74	20	93	67	0	1	29	1.07
5810826--5810939	55	2.0	57	83	9	146	66	0	1	30	1.08
5810829--5811222	12	30.0	13	65	27	101	65	0	1	32	1.09
5810920--5811096	15	12.1	15	67	25	78	64	0	1	33	1.08
5810916--5810999	34	2.6	32	83	9	98	69	0	1	29	0.97
5810952--5811300	112	3.1	112	90	7	568	62	0	1	34	1.11
5810914--5811110	15	12.9	15	63	21	54	65	0	1	32	1.06
5811033--5811222	29	6.6	29	72	16	103	65	0	1	33	1.04
5811153--5811385	81	2.9	81	74	19	218	61	0	2	35	1.14
5811285--5811480	56	3.5	55	72	15	170	61	0	3	35	1.16
5811098--5811480	190	2.0	191	88	6	582	61	0	2	34	1.15
5811623--5811666	15	2.9	15	79	0	52	31	25	9	34	1.87
5815118--5815264	5	29.4	5	69	16	65	68	0	1	29	0.98
5815104--5815267	40	4.1	40	73	14	140	66	0	1	32	1.00
5815132--5815264	31	4.2	31	69	17	96	68	0	1	30	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5815118--5815241	55	2.3	56	85	9	145	68	0	0	30	0.95
5815113--5815234	35	3.8	32	73	18	87	68	0	0	31	0.96
5815115--5815261	50	3.0	49	78	10	153	68	0	1	29	0.98
5815490--5815541	15	3.5	15	83	0	59	34	19	5	40	1.75
5816548--5816579	2	16.0	2	100	0	64	50	0	0	50	1.00
5830083--5830159	30	2.5	30	85	6	102	36	16	5	41	1.71
5852609--5852662	28	1.9	28	88	7	83	27	14	27	29	1.95
5852590--5852674	28	3.1	27	78	6	80	28	12	27	31	1.93
5859199--5859413	35	6.1	35	79	8	181	43	13	6	36	1.70
5860625--5860880	135	1.9	134	86	2	361	27	12	17	41	1.86
5864657--5864696	19	2.0	20	95	4	73	55	0	5	40	1.22
5864913--5864995	28	2.8	30	80	5	80	45	4	16	32	1.69
5864934--5865021	31	2.9	31	79	5	90	45	5	18	30	1.72
5865375--5865430	26	2.2	26	80	6	60	60	8	12	17	1.57
5867313--5867340	2	14.0	2	100	0	56	50	0	0	50	1.00
5869648--5869711	31	2.1	31	85	5	85	21	0	9	68	1.17
5882416--5882514	40	2.4	41	88	1	146	59	17	1	22	1.43
5883141--5883173	16	2.1	17	88	11	52	39	0	6	54	1.25
5882527--5883904	480	2.9	476	85	4	1754	44	6	8	41	1.59
5884115--5884163	12	4.3	12	73	21	52	34	2	0	63	1.06
5884122--5884165	20	2.2	20	95	0	79	31	0	0	68	0.90
5887318--5887382	30	2.1	33	82	8	82	35	7	4	52	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5889649--5889719	19	3.6	20	74	12	67	42	8	5	43	1.58
5891294--5891352	30	2.0	30	96	0	109	45	13	10	30	1.76
5894226--5894301	40	1.9	40	86	0	107	28	11	11	47	1.76
5898148--5898195	21	2.2	22	85	3	62	27	16	10	45	1.80
5900240--5900302	33	1.9	33	93	6	110	34	12	12	39	1.82
5900365--5900432	30	2.3	30	87	5	93	54	7	7	30	1.55
5900854--5900915	27	2.2	28	91	8	101	46	1	0	51	1.10
5900959--5900991	16	2.1	16	88	5	50	66	0	0	33	0.92
5901328--5901382	26	2.1	27	83	10	69	47	1	3	47	1.30
5907680--5907733	26	2.1	26	85	0	72	24	3	12	59	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18