genome.fa.s10.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397263.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_86.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8461613

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  15  of  18  ( 2155 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6689767--6689814	22	2.2	22	85	10	64	68	2	2	27	1.11
6690296--6690326	2	15.5	2	100	0	62	51	0	0	48	1.00
6690378--6690432	28	2.0	28	96	0	101	25	20	16	38	1.92
6692440--6692528	31	2.9	31	79	3	90	29	16	3	50	1.61
6697243--6697288	24	2.0	23	86	4	65	45	0	2	52	1.13
6705694--6705724	2	15.5	2	100	0	62	51	0	0	48	1.00
6706421--6706459	21	2.0	20	85	10	53	43	17	2	35	1.63
6709312--6709503	73	2.6	74	87	2	271	43	14	18	23	1.87
6720982--6721188	73	2.8	74	83	2	265	42	14	19	22	1.88
6723220--6723263	6	7.3	6	86	0	52	47	18	0	34	1.49
6723267--6723293	4	6.8	4	100	0	54	25	0	22	51	1.48
6723524--6723635	43	2.6	43	88	0	179	20	24	17	37	1.94
6726200--6726226	14	1.9	14	100	0	54	81	0	3	14	0.82
6726946--6726995	4	11.8	4	80	19	57	20	2	4	74	1.08
6729940--6729982	21	2.0	21	86	0	59	34	9	18	37	1.83
6736656--6736704	25	2.0	25	84	4	64	22	16	30	30	1.96
6749693--6750000	47	6.5	47	79	5	293	31	13	16	38	1.87
6749698--6750046	47	7.4	47	79	2	225	29	14	16	39	1.88
6749687--6750046	94	3.8	94	76	5	323	30	13	16	39	1.88
6749675--6749995	142	2.3	143	75	9	334	31	14	16	37	1.88
6770818--6771690	200	4.4	199	83	9	1120	40	7	4	47	1.52
6771164--6771207	21	2.2	20	84	12	54	34	9	6	50	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6771176--6771362	93	2.0	94	81	7	220	40	5	5	48	1.49
6771305--6771672	189	2.0	181	89	4	556	40	7	4	47	1.51
6771974--6772017	21	2.0	22	86	4	63	29	0	9	61	1.27
6777122--6777160	14	2.7	15	84	8	53	61	2	0	35	1.10
6783810--6784027	29	7.5	29	83	6	262	38	9	12	38	1.77
6783813--6784037	88	2.6	87	84	6	267	40	9	12	37	1.76
6786547--6786578	15	2.0	17	88	11	50	31	12	12	43	1.80
6791749--6791969	29	7.7	29	82	6	236	39	11	10	38	1.76
6802301--6802347	21	2.3	20	82	13	60	23	21	14	40	1.90
6802302--6802438	73	1.9	72	83	1	175	25	19	14	40	1.90
6802302--6802462	73	2.2	73	79	2	162	25	18	16	39	1.92
6809492--6809645	49	3.1	49	85	3	220	41	27	7	22	1.81
6814073--6814246	74	2.4	74	86	0	240	43	15	17	24	1.87
6817082--6817266	35	5.3	35	88	3	259	35	7	12	45	1.69
6817082--6817266	71	2.6	68	87	5	255	35	7	12	45	1.69
6821419--6821560	71	2.0	71	100	0	284	29	11	18	40	1.85
6822035--6822099	28	2.2	28	84	10	78	27	16	21	33	1.95
6822140--6822819	258	2.6	257	88	2	990	28	18	18	34	1.95
6825429--6825516	15	5.9	15	81	10	117	27	35	5	31	1.80
6825427--6825521	30	3.2	30	95	0	172	27	34	5	32	1.79
6825750--6825820	15	4.7	15	85	0	97	7	36	32	23	1.82
6834965--6835011	16	2.9	16	83	0	58	72	8	2	17	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6835997--6836275	28	9.9	28	80	6	296	38	9	14	37	1.79
6835997--6836270	111	2.4	112	77	11	299	37	9	14	37	1.79
6836003--6836265	139	1.9	140	85	2	368	37	9	14	38	1.79
6846459--6846501	16	2.7	16	82	10	52	62	16	0	20	1.32
6862613--6862674	31	2.0	31	84	6	81	51	9	12	25	1.70
6866813--6866856	21	2.0	22	86	4	63	22	0	13	63	1.29
6866823--6867023	99	2.0	99	90	1	314	29	8	12	49	1.71
6867685--6867808	35	3.6	35	73	10	112	38	24	8	28	1.85
6868223--6868399	73	2.4	73	83	5	223	23	17	16	41	1.89
6869269--6869313	21	2.1	21	84	8	56	2	20	4	73	1.11
6870325--6870454	67	1.9	67	87	0	188	38	24	10	26	1.87
6870859--6870994	73	1.9	72	87	6	202	25	13	14	45	1.82
6870865--6871026	73	2.2	73	82	6	188	25	16	16	42	1.87
6872044--6872087	15	2.8	15	79	6	52	25	2	6	65	1.28
6879216--6879240	13	1.9	13	100	0	50	32	28	16	24	1.96
6883840--6883892	27	1.9	28	85	11	74	20	28	15	35	1.93
6884168--6884238	22	3.3	21	80	7	88	28	12	16	42	1.85
6884164--6884260	44	2.2	43	83	3	122	29	12	16	41	1.85
6884180--6884300	23	5.4	23	75	6	88	32	12	18	37	1.88
6887083--6887245	31	5.3	31	65	2	103	26	16	32	24	1.96
6887077--6887245	62	2.7	61	81	1	176	26	16	31	24	1.96
6887101--6887271	62	2.8	61	83	5	209	24	17	32	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6887199--6887486	93	3.1	93	81	3	326	29	17	29	23	1.97
6891324--6891484	31	5.2	31	82	3	171	40	21	11	26	1.87
6892204--6892308	23	4.6	23	70	7	88	25	29	17	27	1.97
6892275--6892550	47	5.9	47	76	8	242	26	30	15	27	1.96
6892277--6892490	92	2.3	92	80	7	229	26	28	16	28	1.97
6892272--6892529	139	1.9	138	82	8	326	25	30	15	27	1.96
6894183--6894471	69	4.2	66	75	11	206	35	22	14	27	1.93
6897544--6897631	31	2.9	29	80	9	88	28	19	13	38	1.90
6897561--6897621	31	1.9	32	90	3	97	27	16	14	40	1.88
6901625--6901684	28	2.2	29	85	11	90	66	0	0	33	0.92
6904236--6904271	2	18.0	2	88	0	54	47	2	2	47	1.31
6906088--6906125	18	2.1	19	85	5	51	50	2	7	39	1.46
6913964--6914021	25	2.3	25	96	0	107	25	17	22	34	1.96
6916006--6916040	17	2.1	16	89	5	52	62	5	11	20	1.48
6946195--6946228	15	2.2	16	89	5	52	14	2	14	67	1.34
6948422--6948527	35	3.0	35	84	6	135	33	26	15	24	1.95
6949404--6949461	26	2.2	27	87	6	84	46	10	5	37	1.60
6950658--6950841	80	2.3	80	86	2	262	30	8	23	36	1.85
6950810--6950869	31	1.9	31	93	0	102	31	8	25	35	1.85
6952152--6952200	14	3.7	14	84	7	59	28	0	10	61	1.29
6955164--6955205	18	2.4	18	84	11	52	26	2	7	64	1.32
6961834--6962051	29	7.6	29	76	7	183	39	11	11	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6961834--6962041	57	3.6	57	76	7	168	38	11	11	38	1.78
6967525--6967564	20	2.1	19	90	4	62	30	2	7	60	1.38
6982606--6982805	105	1.9	105	95	0	364	45	14	17	23	1.84
6987166--6987416	68	3.7	68	75	5	195	33	19	9	37	1.84
6988389--6988542	62	2.5	62	89	2	229	37	18	11	31	1.87
6989454--6989575	42	2.8	43	88	5	174	26	12	23	37	1.90
7001550--7001722	73	2.4	73	83	3	215	25	21	16	36	1.94
7022912--7023075	29	5.7	28	77	9	159	41	10	9	39	1.71
7022912--7023040	28	4.5	28	77	6	114	41	8	8	41	1.66
7022912--7023040	59	2.2	56	82	5	150	41	8	8	41	1.66
7027255--7027370	35	3.3	35	85	0	151	36	5	13	44	1.66
7027269--7027391	35	3.5	35	82	1	156	37	6	15	40	1.73
7032459--7032528	34	2.1	34	97	0	131	40	11	5	42	1.65
7041618--7041648	14	2.2	14	94	0	53	45	12	9	32	1.75
7053788--7053842	26	2.1	25	87	12	76	40	16	10	32	1.83
7058979--7059038	25	2.4	25	74	0	66	26	28	13	31	1.94
7062379--7062450	33	2.1	34	87	2	101	48	12	4	34	1.60
7063422--7063518	28	3.3	28	78	15	97	44	7	6	42	1.57
7063448--7063577	29	4.7	28	74	16	117	38	13	7	40	1.74
7063422--7063533	59	1.9	58	83	5	145	41	9	5	42	1.60
7063513--7063564	24	2.2	25	86	6	72	30	17	9	42	1.81
7075252--7075307	29	1.9	29	88	0	85	26	12	26	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7079705--7079729	11	2.3	11	100	0	50	72	0	0	28	0.86
7091275--7091367	47	2.0	47	95	2	170	51	4	21	22	1.65
7095996--7096199	34	5.9	35	79	11	183	33	5	13	46	1.68
7099032--7099194	77	2.1	77	88	5	242	38	7	12	41	1.73
7099048--7099214	77	2.2	76	81	8	196	42	8	11	37	1.72
7104171--7104198	14	2.0	14	100	0	56	35	0	0	64	0.94
7114386--7114466	43	1.9	42	85	7	110	23	17	19	39	1.92
7119887--7120034	74	2.0	74	93	2	253	36	17	20	25	1.94
7119896--7120081	74	2.5	73	83	6	223	37	15	23	24	1.93
7139038--7139077	21	1.9	21	84	0	53	20	17	5	57	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18