genome.fa.s10.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397263.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_86.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8461613

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  5  of  18  ( 2155 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2450300--2450408	54	2.0	54	98	0	209	29	10	9	51	1.66
2461481--2461554	36	2.0	38	82	15	93	55	0	1	43	1.08
2467844--2468307	234	2.0	234	92	0	775	24	20	23	31	1.98
2470907--2470936	2	15.0	2	100	0	60	50	0	0	50	1.00
2482668--2482699	17	1.9	17	93	6	57	65	0	0	34	0.93
2486914--2487999	347	3.2	335	77	11	961	45	7	6	40	1.58
2487225--2487889	322	2.0	330	80	5	744	45	7	6	40	1.58
2488211--2488249	21	1.9	20	84	5	51	56	0	2	41	1.13
2488837--2488885	24	2.0	24	88	0	71	40	10	4	44	1.57
2489592--2489628	18	2.0	19	94	5	67	43	0	5	51	1.24
2489591--2489639	18	2.8	17	85	11	64	44	0	6	48	1.27
2489716--2489760	24	1.9	23	86	4	63	51	15	2	31	1.56
2495833--2495866	15	2.3	15	89	0	50	0	47	0	52	1.00
2517259--2517444	62	3.0	61	88	3	273	39	11	13	34	1.82
2539287--2539348	24	2.3	27	81	13	67	54	0	1	43	1.09
2539364--2539419	28	1.9	30	85	7	80	66	1	1	30	1.12
2557901--2557934	15	2.3	15	94	0	59	38	0	0	61	0.96
2561524--2561554	15	2.1	15	93	0	53	29	0	0	70	0.87
2578721--2578755	14	2.4	15	90	4	54	40	0	0	60	0.97
2579364--2579402	20	2.0	20	85	10	53	41	0	0	58	0.98
2580158--2580194	12	3.0	13	88	7	51	45	0	0	54	1.00
2580339--2580383	23	2.0	23	82	8	56	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2582582--2582617	7	5.3	7	86	6	56	69	2	0	27	1.02
2583508--2583534	2	13.5	2	100	0	54	51	0	0	48	1.00
2583534--2583568	2	17.5	2	93	0	61	48	0	48	2	1.16
2622620--2622661	13	3.3	13	78	18	52	57	0	0	42	0.99
2633336--2633391	24	2.3	24	93	0	94	41	17	19	21	1.91
2642711--2642736	2	13.0	2	100	0	52	50	0	50	0	1.00
2651664--2651707	21	2.0	22	91	4	72	61	6	0	31	1.22
2669313--2669349	18	2.1	18	89	0	56	8	48	2	40	1.47
2669318--2669391	21	3.7	19	91	5	87	1	50	6	41	1.37
2669318--2669398	42	1.9	42	87	7	119	1	50	9	38	1.44
2669333--2669398	21	3.1	21	97	0	123	0	53	12	34	1.38
2669419--2669466	21	2.3	21	88	0	69	4	35	16	43	1.67
2672561--2672601	18	2.5	16	85	14	57	63	0	7	29	1.21
2673523--2673563	3	13.7	3	100	0	82	65	0	0	34	0.93
2677655--2677684	2	15.0	2	92	0	51	46	50	3	0	1.18
2682211--2682246	15	2.2	18	85	14	51	61	0	0	38	0.96
2682853--2682891	20	2.0	20	85	14	55	61	0	12	25	1.31
2685273--2685320	24	2.0	24	100	0	96	33	4	20	41	1.72
2718423--2718453	3	10.3	3	100	0	62	32	0	0	67	0.91
2726776--2726817	18	2.3	18	84	8	59	50	7	4	38	1.51
2730191--2730238	25	1.9	25	100	0	96	16	37	33	12	1.86
2731812--2731849	18	2.0	20	85	10	53	42	15	15	26	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2744733--2744780	20	2.4	19	83	16	62	54	0	0	45	0.99
2746101--2746149	22	2.3	20	83	10	62	51	10	0	38	1.36
2747427--2747478	19	2.8	18	73	5	50	38	1	5	53	1.36
2747522--2747558	18	2.1	18	89	0	56	24	2	16	56	1.53
2754245--2754274	2	15.0	2	92	0	51	0	46	0	53	1.00
2754245--2754278	12	2.8	12	95	0	59	0	44	0	55	0.99
2754278--2754305	2	14.0	2	100	0	56	50	0	0	50	1.00
2757404--2757442	2	19.5	2	100	0	78	48	0	0	51	1.00
2757745--2757769	2	12.5	2	100	0	50	52	0	0	48	1.00
2762754--2762831	31	2.7	27	86	11	79	29	19	2	48	1.62
2762759--2762821	31	2.0	31	100	0	126	28	19	3	49	1.63
2764595--2764629	7	5.1	7	89	6	54	68	0	0	31	0.90
2769120--2769158	16	2.4	16	91	4	60	53	35	2	7	1.43
2778854--2778942	44	2.0	44	100	0	178	43	22	8	24	1.82
2785132--2785206	23	3.3	23	65	20	66	44	17	14	24	1.86
2785122--2785214	46	2.0	46	100	0	186	40	17	16	25	1.89
2786300--2786329	2	15.0	2	100	0	60	50	50	0	0	1.00
2810912--2810949	16	2.4	16	95	0	67	13	23	23	39	1.90
2812379--2812405	14	1.9	14	100	0	54	51	3	7	37	1.48
2813976--2814000	3	8.3	3	100	0	50	0	64	0	36	0.94
2815760--2815816	30	1.9	30	85	0	78	45	3	14	36	1.61
2816032--2816101	14	5.0	14	72	11	63	30	0	0	70	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2821697--2821731	2	17.5	2	93	0	61	54	0	0	45	0.99
2827414--2827468	21	2.6	21	94	0	92	9	32	7	50	1.61
2828647--2828681	15	2.3	15	85	0	52	0	31	8	60	1.27
2830432--2830456	13	1.9	13	100	0	50	8	0	28	64	1.22
2837665--2837689	4	6.2	4	100	0	50	76	0	24	0	0.80
2840966--2840993	2	14.0	2	100	0	56	50	0	0	50	1.00
2866168--2866225	27	2.2	27	87	3	82	27	1	3	67	1.17
2866322--2866380	19	3.0	20	83	11	61	5	30	0	64	1.15
2866334--2866385	21	2.5	20	84	6	68	3	26	0	69	1.06
2866339--2866372	17	1.9	18	88	5	52	2	32	0	64	1.08
2866377--2866407	8	3.8	8	91	8	53	16	0	0	83	0.64
2866594--2866641	14	3.5	13	78	13	51	31	0	6	62	1.20
2866595--2866641	20	2.2	22	77	7	53	31	0	6	61	1.21
2867636--2867684	19	2.5	20	81	18	59	51	0	0	48	1.00
2867634--2867682	20	2.4	21	83	12	59	53	0	0	46	1.00
2873384--2873429	3	15.3	3	90	0	74	63	0	4	32	1.14
2878455--2878487	3	10.7	3	93	6	57	63	0	33	3	1.10
2878798--2878855	30	2.0	29	89	3	89	32	5	5	56	1.43
2879303--2879364	30	2.1	28	91	5	97	32	6	4	56	1.46
2878517--2879462	497	1.9	494	87	5	1386	36	9	9	43	1.71
2880812--2880837	2	13.0	2	100	0	52	50	0	0	50	1.00
2890245--2890363	59	2.0	59	95	0	211	27	17	16	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2903278--2903340	30	2.0	32	84	6	85	52	0	4	42	1.22
2906876--2906914	19	2.1	19	90	0	60	41	5	2	51	1.38
2924353--2924384	15	2.1	15	94	0	55	68	0	0	31	0.90
2924349--2924425	33	2.4	33	83	12	90	67	0	3	28	1.08
2924368--2924433	33	2.1	33	88	11	102	66	0	4	28	1.11
2924355--2924479	55	2.3	53	82	8	135	64	0	6	28	1.18
2924435--2924514	40	2.0	40	82	4	99	61	0	7	31	1.24
2924460--2924545	33	2.6	32	83	10	93	65	1	4	29	1.20
2924758--2924803	15	3.0	16	78	12	51	39	21	0	39	1.54
2925250--2925320	15	4.6	15	77	19	58	52	0	0	47	1.00
2927243--2927300	20	2.6	23	73	15	59	13	32	29	24	1.94
2928014--2928069	26	2.2	26	86	0	76	44	5	3	46	1.43
2932236--2932261	2	13.0	2	100	0	52	50	0	50	0	1.00
2933006--2933044	2	19.5	2	94	0	69	51	2	46	0	1.14
2934022--2934153	66	2.0	67	91	4	214	33	15	13	37	1.87
2938598--2938625	2	14.0	2	100	0	56	50	0	50	0	1.00
2945274--2945304	5	6.0	5	96	3	53	22	0	0	77	0.77
2960064--2960121	16	3.4	18	72	18	52	41	1	0	56	1.09
2976072--2976462	130	3.0	130	98	0	755	24	20	19	35	1.96
2986390--2986432	15	2.9	15	85	0	68	37	18	9	34	1.83
2997551--2997596	23	1.9	25	82	8	60	36	13	4	45	1.63
2997391--2998387	361	2.9	345	82	7	1126	40	8	7	44	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2998281--2998328	21	2.3	20	85	3	60	39	6	2	52	1.39
2998340--2998371	15	2.1	16	94	5	57	53	6	0	40	1.26
2998875--2998916	18	2.3	18	95	0	75	38	19	11	30	1.88
3000608--3000693	45	1.9	45	92	0	145	23	19	9	47	1.78
3001283--3001367	43	2.0	43	92	0	143	20	17	21	41	1.91
3002164--3002332	81	2.1	80	79	6	184	42	7	2	46	1.47
3002402--3002439	20	2.0	20	90	10	62	34	5	2	57	1.35
3004201--3004232	15	2.1	15	94	0	55	28	21	6	43	1.77
3007535--3007573	17	2.3	17	81	0	51	51	0	0	48	1.00
3008364--3009055	345	2.0	346	98	0	1352	29	15	21	33	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18