genome.fa.s11.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397264.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_130.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8132550

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  1  of  14  ( 1638 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1435--1507	23	3.2	23	70	1	58	36	13	9	39	1.78
12755--12784	8	3.8	8	95	0	51	56	26	0	16	1.40
19234--19270	15	2.4	15	90	4	56	0	48	5	45	1.25
20740--20772	2	16.5	2	93	0	57	48	0	3	48	1.17
25097--25181	25	3.4	24	79	12	91	32	20	8	38	1.82
27827--27869	5	8.8	5	90	7	54	86	0	13	0	0.58
27830--27873	21	2.1	21	86	0	61	84	0	15	0	0.63
28346--28397	17	3.1	17	72	10	52	23	3	9	63	1.41
29507--29568	21	3.0	21	73	7	63	61	3	1	33	1.22
29583--29634	26	2.0	25	81	3	59	55	0	0	44	0.99
29623--29671	19	2.6	19	77	3	55	53	4	0	42	1.20
29907--29939	15	2.1	16	94	5	59	36	6	18	39	1.75
30018--30124	33	3.3	31	82	10	110	29	1	0	67	1.08
30098--30162	33	1.9	34	87	9	98	32	3	0	64	1.09
30056--30192	24	5.7	24	70	19	72	29	2	0	66	1.11
30088--30223	49	2.8	49	80	11	129	29	2	1	66	1.12
30191--30222	15	2.1	15	94	0	55	28	0	3	68	1.04
30140--30212	31	2.2	33	85	7	96	26	1	2	69	1.09
31028--31671	216	3.0	215	79	8	713	47	5	7	39	1.55
31662--31694	16	2.0	17	88	5	50	51	0	0	48	1.00
37953--37984	3	10.7	3	100	0	64	68	0	0	31	0.90
43843--43956	31	3.5	31	68	15	93	39	18	13	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60861--60885	2	12.5	2	100	0	50	52	0	0	48	1.00
63506--63565	30	2.0	30	90	0	93	40	3	5	51	1.40
67652--67677	2	13.0	2	100	0	52	50	0	0	50	1.00
70731--70770	21	1.9	21	84	0	53	30	2	2	65	1.19
72866--72920	21	2.6	21	85	0	74	43	21	0	34	1.53
77087--77137	15	3.1	17	83	13	63	62	0	0	37	0.95
77087--77128	16	2.6	16	85	14	52	66	0	0	33	0.92
84792--84924	54	2.5	53	79	7	142	43	9	15	31	1.79
84754--84920	27	6.2	27	74	12	92	43	8	14	32	1.76
84819--84921	27	3.8	27	77	10	102	43	6	15	33	1.73
97488--97512	2	12.5	2	100	0	50	52	0	0	48	1.00
98737--98784	23	2.0	24	84	4	62	66	6	22	4	1.32
120336--120384	21	2.3	21	96	0	89	18	24	26	30	1.98
131125--131155	2	15.5	2	100	0	62	48	0	0	51	1.00
136645--136679	16	2.2	16	90	5	54	60	0	0	40	0.97
140051--140089	12	3.2	12	82	10	53	15	10	0	74	1.07
149496--149534	15	2.6	16	84	8	55	48	0	2	48	1.15
149527--149580	27	2.0	27	92	0	90	48	1	0	50	1.11
149674--149786	42	2.7	43	80	4	122	48	1	3	46	1.29
149795--149852	28	2.0	29	83	9	75	60	0	1	37	1.07
149992--150083	23	3.8	23	73	19	80	55	0	2	42	1.12
149977--150055	38	2.1	39	83	11	101	54	0	1	44	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
150007--150089	29	3.2	26	77	15	84	59	0	1	39	1.05
150032--150087	29	2.0	28	89	10	87	57	0	1	41	1.09
161609--161695	44	2.0	45	90	2	140	36	6	18	37	1.78
166618--166651	2	17.0	2	100	0	68	50	0	0	50	1.00
168548--168607	23	2.5	24	78	10	70	43	0	1	55	1.10
174623--174648	3	8.7	3	100	0	52	69	0	30	0	0.89
184759--184789	2	15.5	2	100	0	62	0	0	48	51	1.00
189085--189235	80	1.9	80	84	0	203	24	14	18	42	1.88
190995--191061	34	2.0	33	91	2	107	35	11	13	38	1.82
191779--191830	23	2.3	22	80	9	59	51	0	0	48	1.00
191980--192026	20	2.3	21	82	7	62	44	2	0	53	1.12
192158--192203	18	2.4	19	82	14	58	43	0	4	52	1.21
202073--202099	13	2.1	13	100	0	54	62	7	29	0	1.22
203652--203690	17	2.3	17	100	0	78	41	12	23	23	1.88
211332--211365	17	1.9	18	88	5	52	23	38	2	35	1.70
213271--213315	24	1.9	23	82	13	56	26	6	13	53	1.64
216107--216208	53	1.9	52	86	5	143	28	18	5	47	1.72
219558--219587	3	10.0	3	100	0	60	66	0	0	33	0.92
223247--223280	16	2.2	15	89	5	50	32	0	0	67	0.91
226789--226822	14	2.4	14	85	0	50	58	2	0	38	1.13
240183--240213	15	2.1	15	94	5	55	0	12	0	87	0.55
240183--240213	7	4.3	7	92	8	53	0	12	0	87	0.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
241601--241673	37	1.9	38	83	8	96	34	0	0	65	0.93
241794--241851	27	2.2	26	87	6	82	48	1	0	50	1.11
241628--242005	146	2.5	151	83	7	493	40	2	2	55	1.25
242194--242223	14	2.2	14	94	5	53	0	16	0	83	0.65
251345--251535	96	2.0	96	90	2	303	24	23	21	30	1.99
252173--252437	134	2.0	134	86	1	370	21	27	22	28	1.99
253019--253395	187	2.0	188	87	5	551	49	4	6	39	1.48
255230--255259	14	2.1	14	93	0	51	53	0	0	46	1.00
260881--260949	33	2.1	34	91	2	113	44	10	20	24	1.82
263785--263842	26	2.4	24	78	18	66	55	0	0	44	0.99
263838--263948	41	2.6	44	80	9	133	52	0	2	44	1.21
263841--263943	20	5.1	19	70	18	73	51	0	2	44	1.23
264049--264199	42	3.6	42	70	14	125	52	1	2	43	1.23
264106--264203	26	3.6	26	77	14	101	55	1	1	42	1.13
274881--274928	20	2.4	20	89	6	71	52	2	2	43	1.24
285896--285975	29	2.7	31	75	18	89	56	2	0	41	1.13
293722--293894	92	1.9	89	85	8	235	48	7	7	36	1.60
313852--313876	12	2.1	12	100	0	50	16	16	8	60	1.58
321025--321056	6	5.3	6	96	0	55	0	65	3	31	1.08
325781--325817	2	18.5	2	100	0	74	51	0	48	0	1.00
328300--328347	23	2.2	21	85	14	62	52	0	4	43	1.20
328358--328399	22	2.0	22	90	4	68	73	0	7	19	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
328358--328402	23	2.0	21	87	8	63	73	0	6	20	1.05
328361--328409	23	2.3	21	82	10	55	77	0	8	14	0.98
328361--328410	22	2.3	21	79	6	55	78	0	8	14	0.97
343447--343489	20	2.2	20	91	0	68	30	2	0	67	1.03
348067--348123	28	2.0	29	89	3	89	35	1	0	63	1.05
368035--368430	128	3.0	133	91	5	662	38	12	19	28	1.89
386332--386365	17	2.1	16	89	10	52	50	0	11	38	1.39
386328--386372	16	2.6	17	83	16	58	51	0	8	40	1.33
387244--387339	29	3.2	30	82	5	115	60	1	1	37	1.11
387244--387339	30	3.2	30	79	5	106	60	1	1	37	1.11
388473--388526	27	2.0	27	88	0	81	35	3	0	61	1.14
394968--394993	2	13.0	2	100	0	52	50	0	0	50	1.00
401521--401561	19	2.2	19	86	8	57	80	7	2	9	0.99
413098--413279	89	2.1	88	88	5	269	23	19	14	43	1.87
421182--421229	16	3.1	16	82	11	55	29	27	2	41	1.67
421255--421284	4	7.5	4	100	0	60	0	0	46	53	1.00
422892--423004	34	3.3	35	82	4	106	38	15	15	30	1.88
440635--440762	62	2.1	62	89	0	193	32	25	14	28	1.94
442304--442345	16	2.7	16	81	3	50	42	4	2	50	1.36
442444--442470	14	1.9	14	100	0	54	22	0	11	66	1.22
446637--446673	19	1.9	19	88	0	56	43	18	2	35	1.65
465088--465152	33	1.9	34	84	3	87	47	1	12	38	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
466024--466077	21	2.5	21	84	3	63	51	0	0	48	1.00
466038--466077	21	2.0	21	90	9	66	55	0	0	45	0.99
479452--479477	2	13.0	2	100	0	52	50	0	0	50	1.00
482937--482966	2	15.0	2	100	0	60	50	0	0	50	1.00
498376--498465	46	2.0	46	93	0	153	22	17	25	34	1.96
501658--501705	17	2.8	17	77	0	60	66	8	6	18	1.39
508672--508872	63	3.4	62	72	19	210	32	3	1	62	1.21
508737--508896	15	9.9	15	68	18	65	32	3	0	63	1.14
508745--508810	23	3.0	21	81	16	71	31	0	0	68	0.90
508745--508818	21	3.5	22	84	14	93	31	0	0	68	0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14