genome.fa.s11.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397264.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_130.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8132550

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  12  of  14  ( 1638 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6159040--6159128	19	4.2	20	71	22	65	49	1	0	49	1.08
6159126--6159177	22	2.3	21	75	18	52	48	3	7	40	1.50
6161290--6161347	28	2.1	28	96	0	107	20	10	18	50	1.76
6164410--6164444	2	17.5	2	100	0	70	48	0	0	51	1.00
6168293--6168317	5	5.0	5	100	0	50	0	0	60	40	0.97
6168745--6168797	12	4.4	12	80	0	61	32	5	16	45	1.71
6168745--6168797	18	2.9	18	82	0	70	32	5	16	45	1.71
6169330--6169371	3	14.0	3	89	0	66	66	4	0	28	1.12
6169514--6169556	18	2.4	18	96	0	77	23	6	34	34	1.82
6179629--6179697	34	2.0	34	97	0	129	23	11	21	43	1.85
6185458--6185484	6	4.5	6	100	0	54	85	0	14	0	0.61
6186272--6186345	38	1.9	38	97	0	139	17	21	33	27	1.96
6205068--6205129	20	3.3	18	75	14	63	40	0	0	59	0.97
6223739--6223866	31	4.2	30	77	7	107	39	6	0	53	1.31
6223815--6223873	31	1.9	31	89	0	91	37	10	1	50	1.46
6223959--6223999	13	3.3	13	80	10	50	31	4	19	43	1.72
6224264--6224528	131	2.0	130	88	5	392	36	13	6	43	1.70
6230022--6230369	182	1.9	184	86	2	495	38	11	8	41	1.72
6231829--6231863	16	2.2	16	90	5	54	65	0	0	34	0.93
6232144--6232184	21	1.9	22	90	5	66	36	0	0	63	0.95
6236545--6236600	27	2.0	28	86	3	78	50	17	8	23	1.74
6236735--6236785	16	3.3	16	81	8	61	56	0	3	39	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6236964--6237006	15	2.7	15	86	13	52	39	2	6	51	1.42
6242081--6242169	46	1.9	46	88	4	135	46	4	2	47	1.35
6242108--6242147	19	2.2	18	86	4	53	50	2	0	47	1.14
6261875--6261931	27	2.1	27	87	3	80	47	7	3	42	1.47
6267280--6267350	35	2.0	37	83	5	92	30	2	4	61	1.29
6275924--6275971	3	16.0	3	86	0	60	41	33	25	0	1.55
6275925--6275975	12	4.2	12	89	0	75	43	33	23	0	1.54
6275916--6275971	15	3.7	15	87	0	67	42	33	23	0	1.54
6275914--6275974	18	3.2	18	76	13	59	45	32	21	0	1.52
6304010--6304087	30	2.6	29	78	8	75	57	5	6	30	1.45
6304596--6304638	18	2.4	18	81	11	54	23	0	2	74	0.93
6304846--6305047	107	1.9	108	93	3	354	45	3	14	36	1.63
6314136--6314188	2	26.5	2	92	7	90	0	1	47	50	1.12
6332957--6332982	6	4.3	6	100	0	52	53	30	0	15	1.42
6338673--6338701	14	2.0	15	93	6	51	34	0	0	65	0.93
6343744--6344042	105	2.8	105	87	3	424	26	30	16	26	1.97
6348555--6348588	17	2.0	17	94	0	59	55	17	2	23	1.55
6356403--6356441	18	2.1	18	85	4	51	66	2	0	30	1.05
6362987--6363045	28	2.1	29	84	9	77	47	1	3	47	1.29
6365183--6365376	96	2.0	96	93	1	336	40	23	10	25	1.86
6368951--6368977	3	9.0	3	100	0	54	66	0	0	33	0.92
6369870--6369921	21	2.5	22	84	15	74	48	1	1	48	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6369870--6369929	21	2.9	20	79	16	59	46	3	1	48	1.28
6370733--6370768	16	2.2	16	90	9	56	33	0	8	58	1.28
6375493--6375562	35	2.0	34	81	15	81	54	1	0	44	1.09
6383903--6383941	3	13.0	3	94	0	60	61	0	33	5	1.18
6399556--6399587	16	2.0	16	100	0	64	37	6	43	12	1.68
6417012--6417049	18	2.0	20	90	10	62	47	2	0	50	1.15
6417762--6417792	2	15.5	2	100	0	62	48	0	0	51	1.00
6423120--6423216	21	5.2	21	59	27	56	19	5	22	52	1.65
6423104--6423213	36	3.1	36	100	0	220	21	5	21	50	1.68
6431738--6431794	29	2.0	29	100	0	114	29	24	7	38	1.82
6431730--6431796	29	2.5	25	78	17	80	26	23	7	41	1.81
6458072--6458110	18	2.2	19	86	9	55	35	2	0	61	1.10
6459628--6459666	19	2.1	19	90	9	62	38	10	30	20	1.86
6465905--6465954	24	2.1	24	84	0	64	42	12	20	26	1.86
6474347--6474390	3	14.7	3	90	0	70	29	0	2	68	1.02
6495620--6495648	3	9.7	3	100	0	58	31	0	0	68	0.89
6508600--6508645	18	2.8	16	84	15	58	10	6	2	80	0.98
6511178--6511202	2	12.5	2	100	0	50	0	52	0	48	1.00
6513795--6513917	57	2.2	58	83	4	160	26	21	28	23	1.99
6519643--6519668	7	3.7	7	100	0	52	15	38	15	30	1.88
6526281--6526507	115	2.0	115	99	0	445	29	14	23	31	1.95
6534761--6534787	14	1.9	14	100	0	54	62	0	0	37	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6553775--6553833	27	2.2	27	87	0	82	28	27	15	28	1.96
6561000--6561024	12	2.1	12	100	0	50	40	8	0	52	1.31
6569461--6569591	66	2.0	66	87	0	190	19	20	23	35	1.96
6570903--6571479	72	8.0	71	90	1	814	24	29	18	27	1.98
6591529--6591565	16	2.3	17	81	13	51	67	5	0	27	1.12
6599836--6599870	5	6.8	5	90	3	52	0	17	5	77	0.96
6604909--6604941	6	5.7	6	92	7	59	84	0	0	15	0.61
6605381--6605443	29	2.2	30	80	13	78	47	1	3	47	1.27
6606606--6606637	3	10.7	3	93	0	55	68	0	0	31	0.90
6607540--6607573	2	17.0	2	100	0	68	0	50	0	50	1.00
6613567--6613608	22	2.0	20	86	13	59	26	4	0	69	1.08
6616109--6616250	70	2.0	69	89	1	212	54	6	5	33	1.49
6616921--6616946	13	2.0	13	100	0	52	53	0	0	46	1.00
6616941--6616978	19	2.0	19	89	0	58	55	2	2	39	1.28
6617004--6617046	12	3.5	12	77	3	50	48	0	4	46	1.22
6617000--6617254	110	2.3	110	81	2	282	50	3	4	41	1.38
6617172--6617231	15	3.7	15	74	22	59	55	0	1	43	1.10
6625637--6625675	13	3.0	13	80	0	51	64	0	0	35	0.94
6625802--6625865	27	2.5	26	82	10	69	62	3	0	34	1.11
6625804--6625866	26	2.5	25	78	14	67	61	3	0	34	1.12
6637401--6637431	2	15.5	2	100	0	62	0	51	0	48	1.00
6637442--6637487	2	23.0	2	100	0	92	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6662629--6662658	15	2.0	15	93	0	51	3	53	3	40	1.34
6663714--6663766	21	2.5	22	75	3	54	43	1	0	54	1.11
6669082--6669114	17	2.0	16	94	5	57	6	24	12	57	1.57
6678241--6678306	32	2.1	32	97	0	123	43	15	10	30	1.80
6680228--6680263	2	18.0	2	94	0	63	52	0	47	0	1.00
6689028--6689052	11	2.3	11	100	0	50	52	0	48	0	1.00
6689182--6689219	2	19.0	2	100	0	76	50	0	0	50	1.00
6691571--6691599	2	14.5	2	100	0	58	51	0	0	48	1.00
6691762--6691824	31	2.1	31	87	3	92	30	4	7	57	1.48
6692867--6693023	61	2.7	61	90	7	240	23	18	26	31	1.97
6692979--6693111	44	3.0	44	96	0	248	18	21	27	31	1.97
6693366--6693396	16	1.9	16	100	0	62	38	12	22	25	1.90
6693414--6693497	42	2.0	42	97	0	159	27	21	27	23	1.99
6695783--6695831	4	12.0	4	79	12	55	24	0	0	75	0.80
6695786--6695848	22	2.9	21	81	11	65	25	3	0	71	1.01
6695918--6695974	26	2.1	27	93	3	98	22	12	14	50	1.75
6700491--6700521	1	31.0	1	100	0	62	0	100	0	0	0.00
6712832--6712931	42	2.4	42	83	6	114	48	10	28	14	1.75
6712947--6713031	42	2.0	42	82	8	102	44	11	30	12	1.79
6712767--6713027	96	2.7	93	79	10	269	46	11	28	13	1.78
6714873--6714940	31	2.1	32	84	15	88	36	1	1	60	1.15
6714987--6715063	36	2.1	36	82	0	100	27	29	7	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6715367--6715420	13	3.8	13	83	13	54	37	35	1	25	1.67
6715392--6715420	13	2.2	13	100	0	58	44	27	0	27	1.54
6735987--6736020	5	6.8	5	100	0	68	41	0	0	58	0.98
6741149--6741194	5	9.4	5	80	4	58	82	0	17	0	0.67
6750876--6750906	2	15.5	2	100	0	62	48	0	0	51	1.00
6751953--6751985	2	16.5	2	100	0	66	51	0	0	48	1.00
6753781--6753808	13	2.2	13	100	0	56	57	28	0	14	1.38
6757659--6757695	2	18.0	2	94	5	65	48	2	0	48	1.15
6766343--6766383	18	2.3	19	79	12	50	36	2	0	60	1.10
6766461--6766516	28	2.0	28	82	6	69	39	0	8	51	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14