genome.fa.s11.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397264.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_130.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8132550

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  11  of  14  ( 1638 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5590238--5590569	112	3.0	111	91	7	529	33	2	0	63	1.12
5590621--5590668	24	2.0	24	83	0	60	33	0	0	66	0.92
5590636--5590681	23	2.0	24	83	12	60	26	2	0	71	0.97
5590622--5590708	26	3.3	27	76	9	74	35	1	0	63	1.02
5592855--5592886	16	2.0	16	93	0	55	15	25	12	46	1.81
5623890--5624123	78	3.0	78	87	0	351	35	11	22	30	1.89
5638195--5638219	2	12.5	2	100	0	50	0	48	0	52	1.00
5652374--5652427	27	2.1	25	83	10	65	50	18	0	31	1.48
5664411--5664452	2	21.0	2	95	0	75	50	2	0	47	1.14
5665482--5665507	2	13.0	2	100	0	52	50	0	0	50	1.00
5670855--5670880	2	13.0	2	100	0	52	50	0	0	50	1.00
5673700--5673771	37	1.9	37	85	0	99	40	15	12	31	1.84
5673792--5673821	13	2.4	13	94	5	53	36	23	3	36	1.71
5678179--5678306	62	2.1	62	98	1	249	25	16	17	40	1.90
5681806--5681844	2	20.0	2	89	5	62	51	0	0	48	1.00
5682305--5682375	27	2.6	27	84	0	88	18	19	29	32	1.96
5682434--5682504	27	2.6	27	79	0	88	16	18	28	36	1.93
5682317--5682563	129	1.9	133	84	5	340	12	17	31	38	1.87
5682716--5682781	24	2.8	24	80	0	69	10	21	51	16	1.74
5683735--5683824	31	3.3	26	70	16	67	41	8	14	35	1.77
5686417--5687125	201	3.5	201	88	2	1005	13	23	30	32	1.93
5691569--5691593	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5695469--5695515	20	2.5	19	83	12	62	2	21	6	70	1.20
5722703--5722763	25	2.4	25	97	0	113	37	11	21	29	1.88
5733729--5733799	23	3.2	22	68	31	62	49	25	5	19	1.70
5741362--5741400	2	19.5	2	94	0	69	46	0	2	51	1.14
5743333--5743399	16	4.1	16	72	25	59	50	1	0	47	1.10
5748780--5748804	2	12.5	2	100	0	50	48	0	0	52	1.00
5750970--5751002	13	2.4	14	90	5	50	12	33	0	54	1.37
5755528--5755562	14	2.4	15	90	4	54	37	0	2	60	1.12
5759641--5759689	24	2.0	24	96	0	89	36	4	22	36	1.73
5766270--5766354	34	2.5	34	96	1	154	20	17	24	37	1.93
5766293--5766365	34	2.1	34	82	5	85	23	20	20	35	1.96
5769777--5769831	26	2.1	26	100	0	110	25	14	30	29	1.95
5772898--5772952	27	2.0	27	85	0	74	23	20	27	29	1.99
5780101--5780197	45	2.2	45	92	3	160	35	26	21	16	1.95
5780680--5780754	30	2.5	30	80	18	86	54	0	1	44	1.08
5780922--5780967	24	1.9	24	86	0	65	47	32	8	10	1.69
5786590--5786675	41	2.1	41	93	0	145	41	19	9	29	1.83
5789348--5789381	2	17.0	2	100	0	68	50	0	0	50	1.00
5795878--5795951	21	3.6	21	68	14	55	17	2	25	54	1.56
5795879--5795971	41	2.3	41	83	7	109	22	3	23	50	1.63
5795921--5796027	41	2.6	41	82	2	108	28	5	19	45	1.73
5796003--5796113	21	5.3	21	68	4	62	22	5	25	46	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5797158--5797198	2	20.5	2	100	0	82	48	0	0	51	1.00
5801820--5801857	7	5.4	7	93	0	67	26	28	13	31	1.93
5828425--5828449	5	5.0	5	100	0	50	0	0	60	40	0.97
5828818--5828843	2	13.0	2	100	0	52	50	0	50	0	1.00
5847999--5848049	14	3.6	14	78	19	52	62	1	0	35	1.06
5850657--5850707	20	2.5	21	81	12	61	39	7	19	33	1.81
5850657--5850717	21	3.0	21	78	9	63	37	8	18	36	1.80
5869539--5869564	2	13.0	2	100	0	52	50	0	0	50	1.00
5869950--5869993	21	2.0	23	86	13	65	63	4	4	27	1.33
5876837--5876905	24	2.8	24	70	18	61	69	2	1	26	1.11
5876829--5876898	33	2.2	32	85	12	92	67	2	1	28	1.14
5892010--5892057	25	2.0	25	87	4	71	45	4	8	41	1.53
5895724--5895760	17	2.4	17	86	13	53	48	0	5	45	1.25
5895871--5895904	18	1.9	17	88	5	50	41	0	2	55	1.15
5895859--5895904	16	2.7	18	83	9	53	43	0	2	54	1.12
5909954--5909987	12	2.8	12	86	4	50	73	5	20	0	1.04
5927974--5928014	12	3.4	12	89	0	64	65	0	34	0	0.93
5929385--5929456	34	2.1	34	100	0	144	47	15	18	19	1.83
5933060--5933094	18	1.9	18	88	0	52	28	25	5	40	1.78
5933598--5933634	2	18.5	2	100	0	74	48	0	0	51	1.00
5935353--5935408	24	2.3	23	84	6	67	21	8	17	51	1.72
5935462--5935576	24	4.6	24	68	19	83	34	18	10	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5935418--5935599	76	2.4	76	96	0	337	35	17	9	37	1.82
5954182--5954229	14	3.5	13	80	8	60	56	2	0	41	1.11
5954182--5954230	21	2.4	19	78	15	53	57	2	0	40	1.10
5954207--5954289	30	2.8	29	74	3	85	50	1	1	46	1.16
5954280--5954313	15	2.3	15	90	10	52	52	0	0	47	1.00
5954577--5954697	22	5.5	22	70	19	99	58	1	2	37	1.21
5954515--5954646	66	2.0	64	82	8	160	60	3	0	34	1.20
5954560--5954669	40	2.7	41	83	7	125	56	1	2	39	1.24
5954480--5954846	158	2.4	152	81	9	429	55	3	0	40	1.23
5963292--5963347	9	5.9	9	76	12	58	7	3	60	28	1.40
5963285--5963355	30	2.4	30	100	0	142	5	2	54	36	1.38
5963294--5963347	21	2.8	18	74	15	54	7	3	59	29	1.42
5963303--5963348	21	2.2	21	84	0	56	6	2	58	32	1.36
5964611--5964645	18	1.9	18	94	0	61	8	2	57	31	1.44
5980487--5980532	24	1.9	24	100	0	92	39	34	8	17	1.80
5980971--5981653	202	3.4	201	90	1	1010	35	22	16	26	1.95
5986352--5986376	2	12.5	2	100	0	50	48	0	0	52	1.00
5990257--5990286	3	10.0	3	100	0	60	33	0	0	66	0.92
6000894--6000961	28	2.3	30	78	14	79	67	2	2	26	1.19
6000922--6000962	15	2.7	15	88	0	64	75	0	0	24	0.80
6016672--6016698	9	3.0	9	100	0	54	22	11	33	33	1.89
6019161--6019432	29	9.8	28	69	16	129	36	8	11	44	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6019276--6019331	26	2.2	26	81	9	62	30	14	12	42	1.82
6019273--6019324	26	2.0	26	84	3	68	32	15	11	40	1.83
6019162--6019386	81	2.8	80	72	9	177	35	8	11	44	1.70
6019449--6019610	69	2.3	69	89	0	234	39	8	14	37	1.77
6031160--6031212	8	5.8	9	75	20	56	35	0	0	64	0.94
6031165--6031342	62	2.9	62	82	3	214	32	10	1	56	1.40
6031160--6031356	63	3.1	63	81	2	236	32	10	1	55	1.40
6033014--6033040	12	2.2	12	100	0	54	14	14	7	62	1.51
6035447--6035486	18	2.3	17	86	4	53	62	12	15	10	1.54
6048901--6048931	16	1.9	16	93	0	53	38	48	6	6	1.55
6051613--6051649	3	12.3	3	100	0	74	0	32	0	67	0.91
6054249--6054302	28	2.0	27	85	3	72	38	0	0	61	0.96
6054917--6055186	74	3.7	73	84	4	336	34	16	22	26	1.95
6055461--6055507	7	6.7	7	100	0	94	12	14	27	44	1.82
6056274--6056322	21	2.3	22	86	6	66	30	0	26	42	1.55
6056274--6056322	24	2.0	24	84	7	64	30	0	26	42	1.55
6061334--6061373	21	1.9	21	85	10	55	50	0	0	50	1.00
6078324--6078361	19	1.9	19	85	15	51	13	5	23	57	1.56
6079232--6079258	13	2.1	13	100	0	54	48	0	0	51	1.00
6082848--6082887	2	20.5	2	94	5	73	47	0	0	52	1.00
6085430--6085471	21	2.0	21	90	0	66	47	0	0	52	1.00
6085439--6085505	20	3.5	19	80	10	73	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6087050--6087081	2	16.0	2	93	0	55	0	46	0	53	1.00
6110122--6110154	4	8.2	4	100	0	66	24	0	24	51	1.48
6119903--6119969	30	2.3	31	84	10	95	46	28	7	17	1.75
6128808--6128848	2	20.5	2	94	0	73	0	51	0	48	1.00
6136863--6137014	76	2.0	76	96	0	277	38	23	15	22	1.92
6138369--6138408	19	2.1	19	95	0	71	37	15	20	27	1.92
6146426--6146459	15	2.3	15	89	0	50	55	2	5	35	1.39
6148214--6148248	17	2.1	17	88	0	52	22	0	0	77	0.78
6148196--6148250	19	2.9	19	81	7	60	25	3	0	70	1.03
6153691--6153900	78	2.7	76	77	5	215	25	13	8	51	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14