genome.fa.s11.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397264.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_130.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8132550

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  2  of  14  ( 1638 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
508668--508896	113	2.0	114	93	0	388	32	3	1	62	1.20
508751--508819	22	3.1	22	82	16	72	33	0	0	66	0.92
508971--509051	33	2.5	33	84	15	107	27	1	1	70	1.02
529772--529833	2	31.0	2	83	0	79	46	4	1	46	1.33
529772--529833	18	3.4	18	86	0	88	46	4	1	46	1.33
539688--539741	26	2.1	26	93	6	92	50	14	1	33	1.54
541279--541329	25	2.0	25	85	7	68	21	13	5	58	1.56
542223--542328	14	7.3	14	64	8	59	33	6	30	29	1.83
542223--542327	43	2.4	44	95	3	185	33	6	30	29	1.83
542379--542419	12	3.4	12	96	0	73	17	31	7	43	1.76
542717--542762	18	2.6	17	83	16	58	76	0	0	23	0.79
543070--543212	25	5.5	25	77	12	112	49	5	5	39	1.50
543097--543212	51	2.2	53	83	4	139	50	6	5	37	1.52
543117--543212	26	3.7	26	84	5	124	51	6	5	37	1.50
543214--543267	28	1.9	28	88	0	81	46	5	11	37	1.63
543223--543276	28	1.9	28	92	0	90	46	5	12	35	1.66
543686--543739	25	2.2	24	77	9	56	9	22	1	66	1.30
551657--551816	63	2.5	63	82	2	176	33	8	3	54	1.47
552099--552134	16	2.4	16	90	9	58	36	0	0	63	0.94
552484--552521	18	2.1	18	85	9	51	42	2	2	52	1.29
552640--552693	20	2.7	20	77	11	56	37	3	0	59	1.15
554532--554560	2	14.5	2	100	0	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
555882--555942	29	2.2	27	82	5	68	52	1	13	32	1.50
562052--562076	2	12.5	2	100	0	50	48	0	0	52	1.00
567554--567594	15	2.7	15	84	0	55	36	9	21	31	1.86
567843--567876	16	2.0	18	88	11	54	35	0	0	64	0.94
567795--567893	32	3.2	31	74	14	80	34	3	1	61	1.18
567818--567893	24	3.1	24	85	11	84	32	2	0	64	1.07
567959--568111	5	30.4	5	66	17	59	28	1	0	69	1.04
567746--568005	113	2.3	113	90	7	399	32	4	1	61	1.23
567989--568054	35	1.9	32	82	17	80	33	3	0	63	1.10
567975--568113	15	8.5	15	71	21	75	29	2	0	67	1.07
576333--576358	2	13.0	2	100	0	52	50	0	0	50	1.00
578317--578396	40	2.0	40	97	0	151	36	17	11	35	1.86
593459--593493	18	1.9	18	88	0	52	48	5	2	42	1.41
603838--603876	12	3.2	12	88	0	51	38	0	10	51	1.36
604612--604650	16	2.5	16	91	4	62	71	0	0	28	0.86
604615--604648	8	4.2	8	84	0	50	76	0	0	23	0.79
617502--617580	34	2.3	34	100	0	158	49	0	2	48	1.14
618014--618069	18	3.1	18	84	7	60	25	1	1	71	1.05
619974--620019	23	2.0	24	86	4	67	45	21	8	23	1.80
633265--633290	2	13.0	2	100	0	52	50	0	0	50	1.00
638259--638296	2	19.0	2	100	0	76	50	0	0	50	1.00
643287--643314	3	9.3	3	100	0	56	0	32	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
649270--649329	30	2.0	29	87	9	86	30	3	11	55	1.52
649354--649403	21	2.4	21	79	0	55	44	2	2	52	1.24
650699--650723	3	8.3	3	100	0	50	68	0	0	32	0.90
655445--655476	2	16.5	2	93	6	57	50	0	0	50	1.00
657423--657454	2	16.0	2	93	0	55	53	0	46	0	1.00
667306--667347	2	21.0	2	81	18	52	45	4	0	50	1.23
672149--672204	29	1.9	29	92	7	96	48	10	7	33	1.65
672149--672215	29	2.4	26	83	14	73	50	8	7	32	1.62
676109--676151	21	2.1	20	82	4	50	4	23	0	72	1.04
677462--677490	3	9.7	3	100	0	58	68	0	0	31	0.89
679331--679405	27	2.6	28	82	14	91	60	2	1	36	1.20
680040--680083	23	1.9	23	90	9	72	13	22	9	54	1.67
680470--680522	28	1.9	28	88	3	81	41	7	11	39	1.69
680469--680529	28	2.2	27	82	2	77	39	8	14	37	1.76
680510--680592	31	2.6	32	86	1	114	31	8	12	48	1.70
680539--680727	26	7.0	27	71	16	117	30	12	12	44	1.80
680582--680695	24	4.5	24	74	9	95	29	13	14	42	1.83
680585--680697	50	2.2	51	95	1	201	30	14	13	42	1.83
680711--680924	45	4.8	45	77	5	202	31	19	17	31	1.95
680719--680924	90	2.3	88	82	3	234	31	19	16	32	1.94
680896--680941	21	2.2	21	92	0	74	34	26	17	21	1.95
698245--698290	15	2.9	15	79	20	58	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
698245--698290	16	2.9	16	81	18	60	47	0	0	52	1.00
698536--698565	2	15.5	2	93	6	53	50	0	0	50	1.00
701827--701856	2	15.0	2	100	0	60	50	0	0	50	1.00
708878--708905	6	4.7	6	100	0	56	17	17	50	14	1.79
713803--713827	1	25.0	1	100	0	50	0	0	0	100	0.00
730172--730209	2	19.5	2	86	5	51	44	0	2	52	1.14
734957--735002	2	22.0	2	86	8	65	47	6	0	45	1.28
742040--742080	21	1.9	22	90	5	66	26	34	4	34	1.78
743687--743714	4	7.0	4	100	0	56	50	25	0	25	1.50
746269--746430	82	2.0	83	85	4	220	28	22	25	23	1.99
756570--756609	16	2.5	15	88	11	62	75	0	0	25	0.81
757279--757344	32	2.1	32	91	0	105	22	21	10	45	1.82
758606--758635	2	15.0	2	92	0	51	46	0	3	50	1.18
759906--760054	75	2.0	75	97	1	282	36	13	8	41	1.75
776057--776134	40	1.9	40	84	10	104	28	11	2	57	1.47
776213--776282	33	2.1	33	84	7	88	34	11	5	48	1.63
786726--786789	15	4.2	15	71	16	51	43	1	6	48	1.37
786830--786893	28	2.3	28	78	5	76	45	1	4	48	1.32
789079--789123	19	2.3	20	81	14	58	40	6	4	48	1.49
789143--789192	24	2.0	25	84	3	66	68	10	0	22	1.19
789291--789345	23	2.5	23	82	11	62	38	27	7	27	1.83
792269--792295	13	2.1	13	100	0	54	51	0	7	40	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
798445--798487	2	21.5	2	85	0	59	44	0	6	48	1.29
798441--798487	16	2.9	16	93	0	85	42	0	8	48	1.33
817986--818010	2	12.5	2	100	0	50	48	0	0	52	1.00
821544--821624	29	2.8	27	79	17	90	34	2	3	59	1.29
821541--821637	30	3.3	30	84	5	126	37	2	4	56	1.30
821931--821973	22	1.9	23	90	4	70	58	0	2	39	1.11
828326--828366	2	20.5	2	100	0	82	48	0	0	51	1.00
828962--829018	28	2.1	28	90	9	91	29	24	3	42	1.71
833725--833757	2	16.5	2	93	0	57	54	0	0	45	0.99
833757--833786	2	15.0	2	100	0	60	50	0	50	0	1.00
834157--834211	28	1.9	29	85	3	76	23	7	1	67	1.26
834154--834216	28	2.5	24	72	18	56	23	6	1	68	1.22
834773--834802	15	1.9	15	93	6	51	0	26	0	73	0.84
835180--835261	33	2.6	32	88	5	114	50	2	0	47	1.14
835232--835276	24	2.0	22	91	8	72	42	6	0	51	1.28
838528--838562	11	3.2	11	88	11	54	28	0	0	71	0.86
844514--844543	2	15.0	2	92	0	51	46	3	0	50	1.18
862736--862772	18	2.1	18	94	0	65	48	21	0	29	1.50
866342--866378	2	19.0	2	84	15	51	45	2	0	51	1.15
874521--874556	18	2.0	18	88	0	54	55	0	0	44	0.99
876819--876851	17	2.0	16	94	5	57	84	3	0	12	0.72
879938--879963	11	2.4	11	100	0	52	84	7	7	0	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
896276--896352	30	2.4	33	76	12	88	24	15	7	51	1.69
910249--910289	21	1.9	22	85	5	57	34	24	34	7	1.83
918281--918319	18	2.2	18	86	9	53	28	2	0	69	1.02
926367--926498	56	2.3	56	80	5	140	18	12	14	54	1.71
937399--937471	18	4.1	18	80	3	76	54	8	2	34	1.44
937399--937471	35	2.1	36	87	7	105	54	8	2	34	1.44
937544--937591	18	2.7	18	83	0	69	47	6	8	37	1.59
937628--937653	3	8.7	3	100	0	52	30	0	0	69	0.89
939936--939978	23	1.9	22	90	4	68	62	2	2	32	1.20
941685--941755	23	3.0	24	78	12	67	52	0	1	46	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14