genome.fa.s11.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397264.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_130.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8132550

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  3  of  14  ( 1638 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
941875--942147	55	4.8	56	75	14	218	42	1	3	52	1.26
941873--942029	67	2.3	66	82	5	188	42	0	3	54	1.16
941920--942015	23	4.3	23	67	15	65	39	0	5	55	1.22
941999--942083	26	3.2	26	69	9	71	42	1	4	51	1.30
942151--942196	21	2.2	21	81	14	60	34	2	0	63	1.07
942172--942204	16	2.2	16	89	10	52	27	0	0	72	0.85
942899--942933	16	2.2	16	94	0	61	88	2	0	8	0.61
942999--943097	22	4.5	23	68	14	66	47	1	2	49	1.19
942953--943320	152	2.4	152	85	5	505	42	1	2	53	1.25
943120--943178	27	2.1	28	87	3	84	42	1	3	52	1.28
943419--943496	22	3.4	22	78	16	79	39	1	1	57	1.15
943430--943496	22	2.8	24	78	15	84	43	1	0	55	1.09
943447--943503	22	2.8	19	72	25	53	43	1	0	54	1.10
943430--943500	26	2.9	26	74	21	80	42	1	0	56	1.08
943694--943749	19	2.9	19	78	19	71	44	3	0	51	1.18
947097--947237	67	2.1	68	86	4	196	40	0	2	56	1.16
947178--947283	29	3.8	29	70	7	92	44	1	3	50	1.31
947165--947358	55	3.5	55	85	3	250	42	2	3	51	1.33
947227--947268	22	2.0	21	85	4	57	50	0	2	47	1.14
948124--948201	36	2.2	37	80	11	90	37	2	2	57	1.26
948166--948224	27	2.1	28	90	3	93	38	3	1	55	1.26
948197--948247	22	2.4	23	84	15	74	43	1	0	54	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
948112--948360	109	2.3	108	81	8	281	40	1	3	55	1.26
948338--948398	19	3.2	19	76	17	72	40	3	1	54	1.27
948417--948484	27	2.4	28	82	4	75	42	1	2	52	1.25
948205--948511	151	2.1	143	84	6	384	40	1	3	53	1.30
948549--948623	20	3.6	21	72	16	57	48	4	4	44	1.40
948377--948611	113	2.1	109	81	8	262	39	2	3	54	1.32
957642--957721	38	2.1	39	95	2	144	56	3	11	28	1.52
958124--958163	18	2.3	18	86	4	55	32	7	0	60	1.25
958501--958568	29	2.4	27	80	9	75	35	4	1	58	1.27
959851--959880	8	3.6	8	91	8	51	80	0	0	20	0.72
959851--959881	9	3.6	9	95	4	55	80	0	0	19	0.71
959851--959904	17	3.1	17	86	2	63	81	7	0	11	0.87
982185--982242	13	4.1	13	72	20	53	63	6	0	29	1.20
988350--988406	27	2.1	27	100	0	114	17	29	14	38	1.89
988358--988416	27	2.2	27	84	0	73	18	28	8	44	1.79
992490--992547	19	3.1	19	66	14	57	46	3	12	37	1.58
992491--992564	37	2.0	37	92	5	123	48	2	13	35	1.57
997547--997579	18	1.9	17	88	11	50	63	0	0	36	0.95
997543--997586	21	2.1	22	87	8	65	61	0	0	38	0.96
1001091--1001201	34	3.1	34	73	14	107	28	21	19	29	1.98
1001117--1001196	39	2.1	39	85	4	108	26	21	22	30	1.99
1012899--1012962	29	2.2	29	88	0	92	34	4	9	51	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1012948--1013030	43	2.0	42	87	2	121	31	13	9	45	1.75
1013028--1013073	24	1.9	24	82	8	58	36	8	8	45	1.66
1013000--1013103	26	4.0	25	78	15	88	37	10	7	44	1.68
1013173--1013222	15	3.3	16	78	10	52	46	0	8	46	1.32
1014470--1014502	16	2.1	16	94	0	57	18	18	21	42	1.89
1016035--1016174	74	1.9	74	80	5	167	31	7	1	59	1.35
1016123--1016237	28	4.2	26	73	20	92	31	3	0	64	1.16
1016120--1016224	50	2.1	49	80	7	113	33	3	0	61	1.20
1020728--1020755	2	14.0	2	100	0	56	50	0	0	50	1.00
1021727--1021761	16	2.2	16	89	0	52	45	2	0	51	1.16
1021778--1021813	17	2.1	18	89	5	56	52	0	2	44	1.15
1058901--1058984	42	2.0	42	95	0	150	32	16	7	44	1.75
1064282--1064359	24	3.2	24	88	0	120	16	20	10	52	1.72
1067120--1067169	17	2.9	17	88	5	66	56	0	6	38	1.24
1089968--1089993	12	2.2	12	100	0	52	42	15	19	23	1.89
1092188--1092224	18	2.0	20	89	10	60	29	0	2	67	1.04
1092197--1092225	14	2.0	15	93	6	51	31	0	0	68	0.89
1092211--1092260	5	9.8	5	81	12	57	24	0	2	74	0.93
1092211--1092260	20	2.5	19	87	9	64	24	0	2	74	0.93
1094324--1094379	22	2.6	22	78	15	64	67	0	1	30	1.01
1094335--1094377	12	3.9	11	78	9	52	69	0	2	27	1.00
1094324--1094380	21	2.8	20	79	10	69	68	0	1	29	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1106236--1106266	2	15.5	2	93	0	53	3	0	45	51	1.17
1109457--1109510	22	2.4	22	75	3	54	50	1	3	44	1.30
1110216--1110261	22	2.1	22	88	8	67	45	0	0	54	0.99
1111092--1111204	27	4.3	27	71	19	96	63	0	1	34	1.05
1111121--1111196	35	2.1	37	83	13	97	63	0	1	35	1.03
1124733--1124767	2	17.5	2	87	0	52	45	0	2	51	1.16
1133567--1134020	229	2.0	231	87	0	651	34	14	20	30	1.93
1141008--1141039	2	16.0	2	100	0	64	0	50	0	50	1.00
1141042--1141074	2	16.5	2	100	0	66	48	0	0	51	1.00
1153801--1153847	24	1.9	24	86	4	67	55	0	0	44	0.99
1153875--1153925	21	2.4	22	77	9	61	68	0	0	31	0.90
1153799--1153942	70	2.1	68	79	8	159	54	0	0	44	1.04
1153870--1153935	29	2.5	25	78	19	73	60	0	1	37	1.06
1153920--1153945	10	2.6	10	100	0	52	46	0	0	53	1.00
1154671--1154864	49	3.7	51	72	17	164	33	4	0	61	1.19
1154716--1154789	6	12.0	6	73	13	53	27	1	0	71	0.94
1154714--1154789	16	5.2	15	72	22	56	27	1	0	71	0.95
1154643--1154873	112	2.1	113	95	2	412	32	3	0	62	1.17
1154721--1154792	22	3.4	21	75	17	69	29	1	0	69	0.97
1154823--1154907	33	2.6	32	86	3	107	29	1	0	69	0.96
1154854--1154958	14	7.6	14	69	17	60	29	0	0	68	1.02
1154887--1155008	26	4.6	23	68	28	57	31	1	1	65	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1154824--1154932	33	3.3	32	83	10	98	30	1	0	67	1.01
1155701--1155739	20	2.0	20	94	0	69	61	5	25	7	1.44
1164605--1164648	22	2.0	22	82	8	54	29	22	0	47	1.51
1179231--1179272	21	2.0	21	100	0	84	23	38	14	23	1.92
1181739--1181764	2	13.0	2	100	0	52	50	0	50	0	1.00
1190459--1190488	15	2.0	15	93	0	51	0	26	10	63	1.26
1194992--1195034	14	3.2	13	78	12	50	76	0	6	16	0.99
1195860--1195895	18	1.9	20	88	11	58	52	0	0	47	1.00
1197611--1197697	20	4.6	20	68	16	67	42	2	2	52	1.26
1197575--1197697	56	2.2	56	94	0	210	41	2	4	52	1.34
1198095--1198144	23	2.2	23	82	10	59	74	2	4	20	1.08
1199073--1199221	27	5.9	27	70	19	97	46	0	1	52	1.09
1199065--1199217	15	9.7	15	65	28	52	45	0	1	52	1.08
1199408--1199455	22	2.1	23	85	14	64	43	0	0	56	0.99
1199529--1199558	16	1.9	15	93	6	51	43	0	3	53	1.17
1199528--1199626	15	6.5	15	70	18	64	47	3	1	48	1.24
1199534--1199613	26	3.1	25	79	16	67	47	1	1	50	1.17
1199556--1199620	26	2.5	26	80	7	69	49	3	0	47	1.17
1208435--1208479	24	1.9	24	86	4	65	55	11	6	26	1.59
1237226--1237309	40	2.0	42	84	8	111	39	3	1	55	1.25
1248119--1248218	51	2.0	51	95	0	182	34	21	17	28	1.95
1255654--1255693	13	3.0	13	85	3	53	42	0	2	55	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1261438--1261480	13	3.0	14	83	12	52	65	0	0	34	0.93
1267395--1267444	21	2.4	21	80	12	59	52	2	4	42	1.31
1269822--1269944	56	2.2	56	98	0	237	28	11	37	22	1.89
1276194--1276224	2	15.5	2	93	0	53	48	3	0	48	1.17
1277075--1277182	53	2.0	53	91	3	173	51	11	10	26	1.69
1282174--1282241	31	2.1	33	84	10	88	44	11	7	36	1.69
1282877--1282939	30	2.1	30	82	8	74	57	3	4	34	1.36
1283804--1283846	22	2.0	22	86	9	61	30	0	2	67	1.03
1283804--1283861	21	2.8	21	78	17	59	29	0	1	68	0.99
1285066--1285108	22	2.0	22	90	0	68	48	2	2	46	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14